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scregclust: Reconstructing the Regulatory Programs of Target Genes in
scRNA-Seq Data
Implementation of the scregclust algorithm
described in Larsson, Held, et al. (2024) <doi:10.1038/s41467-024-53954-3>
which reconstructs regulatory programs of target genes in scRNA-seq data.
Target genes are clustered into modules and each module is associated with a linear
model describing the regulatory program.
| Version: |
0.2.0 |
| Depends: |
R (≥ 3.5.0) |
| Imports: |
Matrix, stats, methods, utils, reshape, igraph, graphics, grid, cli, prettyunits, ggplot2, rlang, Rcpp (≥ 1.0.8) |
| LinkingTo: |
Rcpp, RcppEigen |
| Suggests: |
knitr, rmarkdown, testthat (≥ 3.0.0), Seurat (≥ 5.0.0), glmGamPoi, hdf5r |
| Published: |
2024-12-06 |
| DOI: |
10.32614/CRAN.package.scregclust |
| Author: |
Felix Held  [aut,
cre],
Ida Larsson [aut],
Sven Nelander
[aut],
André Armatowski [ctb] |
| Maintainer: |
Felix Held <felix.held at gmail.com> |
| BugReports: |
https://github.com/scmethods/scregclust/issues |
| License: |
GPL (≥ 3) |
| URL: |
https://scmethods.github.io/scregclust/,
https://github.com/scmethods/scregclust/ |
| NeedsCompilation: |
yes |
| Citation: |
scregclust citation info |
| Materials: |
README NEWS |
| CRAN checks: |
scregclust results |
Documentation:
Downloads:
Linking:
Please use the canonical form
https://CRAN.R-project.org/package=scregclust
to link to this page.
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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