Last updated on 2024-10-20 00:49:54 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.3.0 | 9.42 | 324.66 | 334.08 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.3.0 | 5.98 | 253.97 | 259.95 | OK | |
| r-devel-linux-x86_64-fedora-clang | 1.3.0 | 542.53 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 1.3.0 | 342.64 | ERROR | |||
| r-devel-windows-x86_64 | 1.3.0 | 12.00 | 246.00 | 258.00 | OK | |
| r-patched-linux-x86_64 | 1.3.0 | 12.86 | 352.36 | 365.22 | OK | |
| r-release-linux-x86_64 | 1.2.6 | 177.60 | 253.07 | 430.67 | NOTE | |
| r-release-macos-arm64 | 1.3.0 | 53.00 | ERROR | |||
| r-release-macos-x86_64 | 1.3.0 | 86.00 | ERROR | |||
| r-release-windows-x86_64 | 1.3.0 | 11.00 | 243.00 | 254.00 | OK | |
| r-oldrel-macos-arm64 | 1.3.0 | 144.00 | OK | |||
| r-oldrel-macos-x86_64 | 1.3.0 | 448.00 | OK | |||
| r-oldrel-windows-x86_64 | 1.3.0 | 15.00 | 338.00 | 353.00 | OK |
Version: 1.3.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [3m/15m]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(rbmi)
>
> test_check("rbmi")
mmrm() registered as emmeans extension
[ FAIL 4 | WARN 0 | SKIP 13 | PASS 1243 ]
══ Skipped tests (13) ══════════════════════════════════════════════════════════
• On CRAN (1): 'test-mmrm.R:337:5'
• is_full_test() is not TRUE (12): 'test-draws.R:115:5',
'test-fullusage.R:43:5', 'test-fullusage.R:117:5', 'test-fullusage.R:209:5',
'test-fullusage.R:300:5', 'test-fullusage.R:431:5', 'test-fullusage.R:520:5',
'test-fullusage.R:673:5', 'test-mcmc.R:327:5', 'test-mcmc.R:502:5',
'test-parallel.R:8:5', 'test-reproducibility.R:9:5'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-draws.R:144:9'): bayes ─────────────────────────────────────────
Error in `fit_mcmc(designmat = model_df_scaled[, -1, drop = FALSE], outcome = model_df_scaled[,
1, drop = TRUE], group = data2[[vars$group]], visit = data2[[vars$visit]],
subjid = data2[[vars$subjid]], method = method, quiet = quiet)`: unable to load shared object '/tmp/RtmprJ9uQr/working_dir/RtmpUcGEZE/filee910639dc5ef6.so':
libunwind.so.1: cannot open shared object file: No such file or directory
Backtrace:
▆
1. ├─base::suppressWarnings(...) at test-draws.R:143:5
2. │ └─base::withCallingHandlers(...)
3. ├─rbmi::draws(d$dat, d$dat_ice, d$vars, meth, quiet = TRUE) at test-draws.R:144:9
4. └─rbmi:::draws.bayes(d$dat, d$dat_ice, d$vars, meth, quiet = TRUE)
5. └─rbmi:::fit_mcmc(...)
── Error ('test-mcmc.R:108:13'): Verbose suppression works ─────────────────────
Error in `fit_mcmc(designmat = model_df_scaled[, -1, drop = FALSE], outcome = model_df_scaled[,
1, drop = TRUE], group = data2[[vars$group]], visit = data2[[vars$visit]],
subjid = data2[[vars$subjid]], method = method, quiet = quiet)`: unable to load shared object '/tmp/RtmprJ9uQr/working_dir/RtmpUcGEZE/filee91062f5f3d71.so':
libunwind.so.1: cannot open shared object file: No such file or directory
Backtrace:
▆
1. ├─base::suppressWarnings(...) at test-mcmc.R:106:5
2. │ └─base::withCallingHandlers(...)
3. ├─utils::capture.output(...) at test-mcmc.R:107:9
4. │ └─base::withVisible(...elt(i))
5. ├─rbmi::draws(...) at test-mcmc.R:108:13
6. └─rbmi:::draws.bayes(...)
7. └─rbmi:::fit_mcmc(...)
── Error ('test-print.R:102:9'): print - bayesian ──────────────────────────────
Error in `fit_mcmc(designmat = model_df_scaled[, -1, drop = FALSE], outcome = model_df_scaled[,
1, drop = TRUE], group = data2[[vars$group]], visit = data2[[vars$visit]],
subjid = data2[[vars$subjid]], method = method, quiet = quiet)`: unable to load shared object '/tmp/RtmprJ9uQr/working_dir/RtmpUcGEZE/filee9106524ddcc5.so':
libunwind.so.1: cannot open shared object file: No such file or directory
Backtrace:
▆
1. ├─base::suppressWarnings(...) at test-print.R:101:5
2. │ └─base::withCallingHandlers(...)
3. ├─rbmi::draws(...) at test-print.R:102:9
4. └─rbmi:::draws.bayes(...)
5. └─rbmi:::fit_mcmc(...)
── Error ('test-reproducibility.R:121:9'): bayes - set.seed produces identical results ──
Error in `fit_mcmc(designmat = model_df_scaled[, -1, drop = FALSE], outcome = model_df_scaled[,
1, drop = TRUE], group = data2[[vars$group]], visit = data2[[vars$visit]],
subjid = data2[[vars$subjid]], method = method, quiet = quiet)`: unable to load shared object '/tmp/RtmprJ9uQr/working_dir/RtmpUcGEZE/filee910633726873.so':
libunwind.so.1: cannot open shared object file: No such file or directory
Backtrace:
▆
1. ├─base::suppressWarnings(...) at test-reproducibility.R:120:5
2. │ └─base::withCallingHandlers(...)
3. ├─rbmi::draws(dat, dat_ice, vars, meth, quiet = TRUE) at test-reproducibility.R:121:9
4. └─rbmi:::draws.bayes(dat, dat_ice, vars, meth, quiet = TRUE)
5. └─rbmi:::fit_mcmc(...)
[ FAIL 4 | WARN 0 | SKIP 13 | PASS 1243 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 1.2.6
Check: for GNU extensions in Makefiles
Result: NOTE
GNU make is a SystemRequirements.
Flavor: r-release-linux-x86_64
Version: 1.3.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [7s/10s]
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
43: tryCatch(withCallingHandlers({ eval(code, test_env) if (!handled && !is.null(test)) { skip_empty() }}, expectation = handle_expectation, skip = handle_skip, warning = handle_warning, message = handle_message, error = handle_error), error = handle_fatal, skip = function(e) { })
44: test_code(test = NULL, code = exprs, env = env, default_reporter = StopReporter$new())
45: source_file(path, env = env(env), desc = desc, error_call = error_call)
46: FUN(X[[i]], ...)
47: lapply(test_paths, test_one_file, env = env, desc = desc, error_call = error_call)
48: doTryCatch(return(expr), name, parentenv, handler)
49: tryCatchOne(expr, names, parentenv, handlers[[1L]])
50: tryCatchList(expr, classes, parentenv, handlers)
51: tryCatch(code, testthat_abort_reporter = function(cnd) { cat(conditionMessage(cnd), "\n") NULL})
52: with_reporter(reporters$multi, lapply(test_paths, test_one_file, env = env, desc = desc, error_call = error_call))
53: test_files_serial(test_dir = test_dir, test_package = test_package, test_paths = test_paths, load_helpers = load_helpers, reporter = reporter, env = env, stop_on_failure = stop_on_failure, stop_on_warning = stop_on_warning, desc = desc, load_package = load_package, error_call = error_call)
54: test_files(test_dir = path, test_paths = test_paths, test_package = package, reporter = reporter, load_helpers = load_helpers, env = env, stop_on_failure = stop_on_failure, stop_on_warning = stop_on_warning, load_package = load_package, parallel = parallel)
55: test_dir("testthat", package = package, reporter = reporter, ..., load_package = "installed")
56: test_check("rbmi")
An irrecoverable exception occurred. R is aborting now ...
Flavor: r-release-macos-arm64
Version: 1.3.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [10s/14s]
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
43: tryCatch(withCallingHandlers({ eval(code, test_env) if (!handled && !is.null(test)) { skip_empty() }}, expectation = handle_expectation, skip = handle_skip, warning = handle_warning, message = handle_message, error = handle_error), error = handle_fatal, skip = function(e) { })
44: test_code(test = NULL, code = exprs, env = env, default_reporter = StopReporter$new())
45: source_file(path, env = env(env), desc = desc, error_call = error_call)
46: FUN(X[[i]], ...)
47: lapply(test_paths, test_one_file, env = env, desc = desc, error_call = error_call)
48: doTryCatch(return(expr), name, parentenv, handler)
49: tryCatchOne(expr, names, parentenv, handlers[[1L]])
50: tryCatchList(expr, classes, parentenv, handlers)
51: tryCatch(code, testthat_abort_reporter = function(cnd) { cat(conditionMessage(cnd), "\n") NULL})
52: with_reporter(reporters$multi, lapply(test_paths, test_one_file, env = env, desc = desc, error_call = error_call))
53: test_files_serial(test_dir = test_dir, test_package = test_package, test_paths = test_paths, load_helpers = load_helpers, reporter = reporter, env = env, stop_on_failure = stop_on_failure, stop_on_warning = stop_on_warning, desc = desc, load_package = load_package, error_call = error_call)
54: test_files(test_dir = path, test_paths = test_paths, test_package = package, reporter = reporter, load_helpers = load_helpers, env = env, stop_on_failure = stop_on_failure, stop_on_warning = stop_on_warning, load_package = load_package, parallel = parallel)
55: test_dir("testthat", package = package, reporter = reporter, ..., load_package = "installed")
56: test_check("rbmi")
An irrecoverable exception occurred. R is aborting now ...
Flavor: r-release-macos-x86_64
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