CRAN Package Check Results for Package poppr

Last updated on 2025-01-22 13:01:42 CET.

Flavor	Version	Tinstall	Tcheck	Ttotal	Status	Flags
r-devel-linux-x86_64-debian-clang	2.9.6	30.88	210.77	241.65	NOTE
r-devel-linux-x86_64-debian-gcc	2.9.6	20.43	148.45	168.88	NOTE
r-devel-linux-x86_64-fedora-clang	2.9.6			385.51	OK
r-devel-linux-x86_64-fedora-gcc	2.9.6			372.81	OK
r-devel-windows-x86_64	2.9.6	35.00	245.00	280.00	NOTE
r-patched-linux-x86_64	2.9.6	36.74	194.39	231.13	OK
r-release-linux-x86_64	2.9.6	26.98	196.40	223.38	OK
r-release-macos-arm64	2.9.6			97.00	OK
r-release-macos-x86_64	2.9.6			155.00	WARN
r-release-windows-x86_64	2.9.6	34.00	242.00	276.00	OK
r-oldrel-macos-arm64	2.9.6			110.00	OK
r-oldrel-macos-x86_64	2.9.6			215.00	OK
r-oldrel-windows-x86_64	2.9.6	41.00	299.00	340.00	OK

Check Details

Version: 2.9.6
Check: Rd cross-references
Result: NOTE Found the following Rd file(s) with Rd \link{} targets missing package anchors: MLG-accessors.Rd: genlight-class aboot.Rd: genind, genpop, genlight-class bitwise.dist.Rd: genlight-class, genind-class bitwise.ia.Rd: genlight-class bootgen-class.Rd: gen-class bruvo.boot.Rd: genind, boot.phylo, nancycats, nj, nodelabels, tab bruvo.dist.Rd: genind bruvo.msn.Rd: genind, nancycats bruvomat-methods.Rd: genind-class clonecorrect.Rd: genind-class coercion-methods.Rd: genind-class, splitStrata diss.dist.Rd: genind diversity_ci.Rd: genind filter_stats.Rd: genind, genlight fix_replen.Rd: genind genclone-class.Rd: genind-class, genlight-class genclone-method.Rd: genind-class genetic_distance.Rd: genind-class, dist.genpop genind2genalex.Rd: genind-class genotype_curve.Rd: genind-class ia.Rd: import2genind info_table.Rd: genind-class informloci.Rd: genind-class is.clone.Rd: genind-class, genlight-class missingno.Rd: genind-class, tab mlg.Rd: ggplot mlg.filter.Rd: genind-class pgen.Rd: strata plot_poppr_msn.Rd: genind-class, genlight-class poppr-package.Rd: genind-class, genlight-class poppr.Rd: tab, strata, last_plot poppr.amova.Rd: genind-class, genlight-class, strata, quasieuclid, lingoes, cailliez poppr.msn.Rd: genind, genlight, nancycats, nj, nodelabels, tab popsub.Rd: genind-class, genlight-class psex.Rd: strata read.genalex.Rd: genind, other, genind-class recode_polyploids.Rd: genind-class, genpop-class rraf.Rd: strata shufflepop.Rd: genind-class snpclone-coercion-methods.Rd: genlight-class snpclone-method.Rd: genlight-class test_replen.Rd: genind upgma.Rd: as.phylo win.ia.Rd: genlight-class Please provide package anchors for all Rd \link{} targets not in the package itself and the base packages. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64

Version: 2.9.6
Check: re-building of vignette outputs
Result: WARN Error(s) in re-building vignettes: ... --- re-building ‘algo.Rnw’ using knitr Error: processing vignette 'algo.Rnw' failed with diagnostics: Running 'texi2dvi' on 'algo.tex' failed. LaTeX errors: ! Undefined control sequence. l.548 \hlkwd{library}\hldef {(}\hlsng{"poppr"}\hldef{)} ? ! Emergency stop. ! Emergency stop. l.548 End of file on the terminal! ! ==> Fatal error occurred, no output PDF file produced! --- failed re-building ‘algo.Rnw’ SUMMARY: processing the following file failed: ‘algo.Rnw’ Error: Vignette re-building failed. Execution halted Flavor: r-release-macos-x86_64