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Population genetic analyses for hierarchical analysis of partially clonal populations built upon the architecture of the 'adegenet' package. Originally described in Kamvar, Tabima, and Grünwald (2014) <doi:10.7717/peerj.281> with version 2.0 described in Kamvar, Brooks, and Grünwald (2015) <doi:10.3389/fgene.2015.00208>.
Version: | 2.9.6 |
Depends: | R (≥ 2.15.1), adegenet (≥ 2.0.0) |
Imports: | stats, graphics, grDevices, utils, vegan, ggplot2, ape (≥ 3.1-1), igraph (≥ 1.0.0), methods, ade4, pegas, polysat, dplyr (≥ 0.4), rlang, boot, shiny, magrittr, progressr |
Suggests: | testthat, knitr, rmarkdown, poweRlaw, cowplot |
Published: | 2024-03-15 |
DOI: | 10.32614/CRAN.package.poppr |
Author: | Zhian N. Kamvar [cre, aut], Javier F. Tabima [aut], Sydney E. Everhart [ctb, dtc], Jonah C. Brooks [aut], Stacy A. Krueger-Hadfield [ctb], Erik Sotka [ctb], Brian J. Knaus [ctb], Patrick G. Meirmans [ctb], Frédéric D. Chevalier [ctb], David Folarin [aut], Niklaus J. Grünwald [ths] |
Maintainer: | Zhian N. Kamvar <zkamvar at gmail.com> |
MailingList: | https://groups.google.com/d/forum/poppr |
BugReports: | https://github.com/grunwaldlab/poppr/issues/ |
License: | GPL-2 | GPL-3 |
URL: | https://grunwaldlab.github.io/poppr/, https://github.com/grunwaldlab/poppr/, https://grunwaldlab.github.io/Population_Genetics_in_R/ |
NeedsCompilation: | yes |
Citation: | poppr citation info |
Materials: | README NEWS |
In views: | Agriculture |
CRAN checks: | poppr results |
Reference manual: | poppr.pdf |
Vignettes: |
Algorightms and Equations |
Package source: | poppr_2.9.6.tar.gz |
Windows binaries: | r-devel: poppr_2.9.6.zip, r-release: poppr_2.9.6.zip, r-oldrel: poppr_2.9.6.zip |
macOS binaries: | r-release (arm64): poppr_2.9.6.tgz, r-oldrel (arm64): poppr_2.9.6.tgz, r-release (x86_64): poppr_2.9.6.tgz, r-oldrel (x86_64): poppr_2.9.6.tgz |
Old sources: | poppr archive |
Reverse suggests: | adegenet, AlleleShift, dartR, dartR.base, vcfR |
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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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