Last updated on 2025-12-04 09:50:30 CET.
| Package | ERROR | NOTE | OK |
|---|---|---|---|
| bayestestR | 13 | ||
| insight | 6 | 7 | |
| modelbased | 13 | ||
| parameters | 2 | 11 | |
| performance | 1 | 1 | 11 |
Current CRAN status: OK: 13
Current CRAN status: ERROR: 6, OK: 7
Version: 1.4.3
Check: examples
Result: ERROR
Running examples in ‘insight-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: is_converged
> ### Title: Convergence test for mixed effects models
> ### Aliases: is_converged
>
> ### ** Examples
>
> ## Don't show:
> if (require("lme4", quietly = TRUE)) withAutoprint({ # examplesIf
+ ## End(Don't show)
+ library(lme4)
+ data(cbpp)
+ set.seed(1)
+ cbpp$x <- rnorm(nrow(cbpp))
+ cbpp$x2 <- runif(nrow(cbpp))
+
+ model <- glmer(
+ cbind(incidence, size - incidence) ~ period + x + x2 + (1 + x | herd),
+ data = cbpp,
+ family = binomial()
+ )
+
+ is_converged(model)
+ ## Don't show:
+ }) # examplesIf
> library(lme4)
> data(cbpp)
> set.seed(1)
> cbpp$x <- rnorm(nrow(cbpp))
> cbpp$x2 <- runif(nrow(cbpp))
> model <- glmer(cbind(incidence, size - incidence) ~ period + x + x2 +
+ (1 + x | herd), data = cbpp, family = binomial())
boundary (singular) fit: see help('isSingular')
> is_converged(model)
Error in h(simpleError(msg, call)) :
error in evaluating the argument 'a' in selecting a method for function 'solve': object 'Hessian' not found
Calls: withAutoprint ... eval -> eval -> <Anonymous> -> .handleSimpleError -> h
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.4.3
Check: tests
Result: ERROR
Running ‘testthat.R’ [214s/110s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(insight)
> test_check("insight")
Starting 2 test processes.
> test-betareg.R: Loading required namespace: numDeriv
> test-find_transformation.R: boundary (singular) fit: see help('isSingular')
> test-gamlss.R: GAMLSS-RS iteration 1: Global Deviance = 365.2328
> test-gamlss.R: GAMLSS-RS iteration 2: Global Deviance = 365.1292
> test-gamlss.R: GAMLSS-RS iteration 3: Global Deviance = 365.1269
> test-gamlss.R: GAMLSS-RS iteration 4: Global Deviance = 365.1268
> test-gamlss.R: GAMLSS-RS iteration 1: Global Deviance = 5779.746
> test-gamlss.R: GAMLSS-RS iteration 2: Global Deviance = 5779.746
> test-gamlss.R: GAMLSS-RS iteration 1: Global Deviance = 703.1164
> test-gamlss.R: GAMLSS-RS iteration 2: Global Deviance = 703.1164
> test-get_model.R: Loading required namespace: GPArotation
> test-get_random.R: boundary (singular) fit: see help('isSingular')
> test-glmmPQL.R: iteration 1
Saving _problems/test-is_converged-16.R
> test-mmrm.R: mmrm() registered as emmeans extension
> test-mmrm.R: mmrm() registered as car::Anova extension
> test-model_info.R: boundary (singular) fit: see help('isSingular')
> test-nestedLogit.R: list(work = c(0L, 0L, 0L, 0L, 0L, 0L, 0L, 1L, 0L, 0L, 0L, 1L,
> test-nestedLogit.R: 0L, 0L, 0L, 0L, 1L, 1L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L,
> test-nestedLogit.R: 0L, 1L, 1L, 1L, 0L, 1L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 1L, 1L, 1L,
> test-nestedLogit.R: 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 1L, 1L, 1L, 1L, 1L, 1L,
> test-nestedLogit.R: 1L, 1L, 0L, 0L, 0L, 1L, 1L, 1L, 0L, 0L, 0L, 1L, 1L, 0L, 0L, 1L,
> test-nestedLogit.R: 1L, 1L, 1L, 1L, 1L, 0L, 1L, 1L, 1L, 1L, 1L, 0L, 0L, 0L, 0L, 0L,
> test-nestedLogit.R: 1L, 1L, 0L, 0L, 1L, 0L, 0L, 1L, 1L, 1L, 0L, 1L, 1L, 1L, 0L, 0L
> test-nestedLogit.R: ), full = c(1L, 1L, 0L, 1L, 1L, 0L, 0L, 0L, 1L, 1L, 0L, 0L, 0L,
> test-nestedLogit.R: 1L, 0L, 1L, 1L, 0L, 1L, 0L, 0L, 0L, 1L, 1L, 0L, 1L, 1L, 0L, 0L,
> test-nestedLogit.R: 0L, 1L, 1L, 1L, 1L, 0L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L))
> test-polr.R:
> test-polr.R: Re-fitting to get Hessian
> test-polr.R:
> test-polr.R:
> test-polr.R: Re-fitting to get Hessian
> test-polr.R:
> test-survey_coxph.R: Stratified Independent Sampling design (with replacement)
> test-survey_coxph.R: dpbc <- survey::svydesign(
> test-survey_coxph.R: id = ~1,
> test-survey_coxph.R: prob = ~randprob,
> test-survey_coxph.R: strata = ~edema,
> test-survey_coxph.R: data = subset(pbc, randomized)
> test-survey_coxph.R: )
> test-survey_coxph.R: Stratified Independent Sampling design (with replacement)
> test-survey_coxph.R: dpbc <- survey::svydesign(
> test-survey_coxph.R: id = ~1,
> test-survey_coxph.R: prob = ~randprob,
> test-survey_coxph.R: strata = ~edema,
> test-survey_coxph.R: data = subset(pbc, randomized)
> test-survey_coxph.R: )
> test-survey_coxph.R: Stratified Independent Sampling design (with replacement)
> test-survey_coxph.R: dpbc <- survey::svydesign(
> test-survey_coxph.R: id = ~1,
> test-survey_coxph.R: prob = ~randprob,
> test-survey_coxph.R: strata = ~edema,
> test-survey_coxph.R: data = subset(pbc, randomized)
> test-survey_coxph.R: )
[ FAIL 1 | WARN 5 | SKIP 96 | PASS 3512 ]
══ Skipped tests (96) ══════════════════════════════════════════════════════════
• On CRAN (89): 'test-GLMMadaptive.R:2:1', 'test-averaging.R:1:1',
'test-bias_correction.R:1:1', 'test-blmer.R:262:3', 'test-brms.R:1:1',
'test-brms_aterms.R:1:1', 'test-brms_gr_random_effects.R:1:1',
'test-brms_missing.R:1:1', 'test-brms_mm.R:1:1', 'test-brms_von_mises.R:1:1',
'test-betareg.R:197:5', 'test-clean_names.R:109:3',
'test-clean_parameters.R:1:1', 'test-coxme.R:1:1', 'test-clmm.R:170:3',
'test-cpglmm.R:152:3', 'test-display.R:1:1', 'test-display.R:15:1',
'test-export_table.R:3:1', 'test-export_table.R:7:1',
'test-export_table.R:134:3', 'test-export_table.R:164:3',
'test-export_table.R:193:1', 'test-export_table.R:278:1',
'test-export_table.R:296:3', 'test-export_table.R:328:3',
'test-export_table.R:385:1', 'test-export_table.R:406:3',
'test-export_table.R:470:3', 'test-find_random.R:43:3', 'test-fixest.R:2:1',
'test-format_table.R:2:1', 'test-format_table_ci.R:72:1', 'test-gam.R:2:1',
'test-find_smooth.R:39:3', 'test-get_data.R:507:1',
'test-get_loglikelihood.R:143:3', 'test-get_loglikelihood.R:223:3',
'test-get_predicted.R:2:1', 'test-get_priors.R:1:1',
'test-get_varcov.R:43:3', 'test-get_varcov.R:57:3',
'test-get_datagrid.R:1068:3', 'test-get_datagrid.R:1105:5',
'test-is_converged.R:32:1', 'test-iv_robust.R:120:3', 'test-lavaan.R:1:1',
'test-lcmm.R:1:1', 'test-lme.R:28:3', 'test-lme.R:212:3',
'test-glmmTMB.R:67:3', 'test-glmmTMB.R:767:3', 'test-glmmTMB.R:803:3',
'test-glmmTMB.R:1142:3', 'test-marginaleffects.R:1:1', 'test-mgcv.R:1:1',
'test-mipo.R:1:1', 'test-mlogit.R:1:1', 'test-model_info.R:106:3',
'test-modelbased.R:1:1', 'test-mvrstanarm.R:1:1', 'test-null_model.R:85:3',
'test-panelr-asym.R:165:3', 'test-panelr.R:295:3', 'test-phylolm.R:1:1',
'test-print_parameters.R:1:1', 'test-r2_nakagawa_bernoulli.R:1:1',
'test-r2_nakagawa_beta.R:1:1', 'test-r2_nakagawa_binomial.R:1:1',
'test-r2_nakagawa_gamma.R:1:1', 'test-r2_nakagawa_linear.R:1:1',
'test-r2_nakagawa_negbin.R:1:1', 'test-r2_nakagawa_negbin_zi.R:1:1',
'test-r2_nakagawa_ordered_beta.R:1:1', 'test-r2_nakagawa_poisson.R:1:1',
'test-r2_nakagawa_poisson_zi.R:1:1',
'test-r2_nakagawa_truncated_poisson.R:1:1', 'test-r2_nakagawa_tweedie.R:1:1',
'test-rlmer.R:276:3', 'test-rms.R:1:1', 'test-rqss.R:1:1',
'test-rstanarm.R:1:1', 'test-sdmTMB.R:1:1', 'test-selection.R:2:1',
'test-spatial.R:2:1', 'test-svylme.R:1:1', 'test-tidymodels.R:1:1',
'test-vgam.R:2:1', 'test-weightit.R:1:1'
• On Linux (3): 'test-BayesFactorBF.R:1:1', 'test-MCMCglmm.R:1:1',
'test-get_data.R:161:3'
• Package `logistf` is loaded and breaks `mmrm::mmrm()` (1): 'test-mmrm.R:4:1'
• works interactively (2): 'test-coxph-panel.R:34:3', 'test-coxph.R:38:3'
• {bigglm} is not installed (1): 'test-model_info.R:24:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-is_converged.R:16:3'): is_converged ────────────────────────────
Error in `h(simpleError(msg, call))`: error in evaluating the argument 'a' in selecting a method for function 'solve': object 'Hessian' not found
Backtrace:
▆
1. ├─testthat::expect_true(is_converged(model)) at test-is_converged.R:16:3
2. │ └─testthat::quasi_label(enquo(object), label)
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. ├─insight::is_converged(model)
5. ├─insight:::is_converged.merMod(model)
6. │ ├─base::with(x@optinfo$derivs, Matrix::solve(Hessian, gradient))
7. │ ├─base::with.default(x@optinfo$derivs, Matrix::solve(Hessian, gradient))
8. │ │ └─base::eval(substitute(expr), data, enclos = parent.frame())
9. │ │ └─base::eval(substitute(expr), data, enclos = parent.frame())
10. │ └─Matrix::solve(Hessian, gradient)
11. └─base::.handleSimpleError(...)
12. └─base (local) h(simpleError(msg, call))
[ FAIL 1 | WARN 5 | SKIP 96 | PASS 3512 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.4.3
Check: examples
Result: ERROR
Running examples in ‘insight-Ex.R’ failed
The error most likely occurred in:
> ### Name: is_converged
> ### Title: Convergence test for mixed effects models
> ### Aliases: is_converged
>
> ### ** Examples
>
> ## Don't show:
> if (require("lme4", quietly = TRUE)) withAutoprint({ # examplesIf
+ ## End(Don't show)
+ library(lme4)
+ data(cbpp)
+ set.seed(1)
+ cbpp$x <- rnorm(nrow(cbpp))
+ cbpp$x2 <- runif(nrow(cbpp))
+
+ model <- glmer(
+ cbind(incidence, size - incidence) ~ period + x + x2 + (1 + x | herd),
+ data = cbpp,
+ family = binomial()
+ )
+
+ is_converged(model)
+ ## Don't show:
+ }) # examplesIf
> library(lme4)
> data(cbpp)
> set.seed(1)
> cbpp$x <- rnorm(nrow(cbpp))
> cbpp$x2 <- runif(nrow(cbpp))
> model <- glmer(cbind(incidence, size - incidence) ~ period + x + x2 +
+ (1 + x | herd), data = cbpp, family = binomial())
boundary (singular) fit: see help('isSingular')
> is_converged(model)
Error in h(simpleError(msg, call)) :
error in evaluating the argument 'a' in selecting a method for function 'solve': object 'Hessian' not found
Calls: withAutoprint ... eval -> eval -> <Anonymous> -> .handleSimpleError -> h
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-release-windows-x86_64, r-oldrel-windows-x86_64
Version: 1.4.3
Check: tests
Result: ERROR
Running ‘testthat.R’ [10m/14m]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(insight)
> test_check("insight")
Starting 2 test processes.
> test-find_transformation.R: boundary (singular) fit: see help('isSingular')
> test-gamlss.R: GAMLSS-RS iteration 1: Global Deviance = 365.2328
> test-gamlss.R: GAMLSS-RS iteration 2: Global Deviance = 365.1292
> test-gamlss.R: GAMLSS-RS iteration
> test-gamlss.R: 3: Global Deviance = 365.1269
> test-gamlss.R: GAMLSS-RS iteration 4: Global Deviance = 365.1268
> test-gamlss.R: GAMLSS-RS iteration 1: Global Deviance = 5779.746
> test-gamlss.R: GAMLSS-RS iteration 2: Global Deviance = 5779.746
> test-gamlss.R: GAMLSS-RS iteration 1: Global Deviance = 703.1164
> test-gamlss.R: GAMLSS-RS iteration 2: Global Deviance = 703.1164
> test-get_model.R: Loading required namespace: GPArotation
> test-get_random.R: boundary (singular) fit: see help('isSingular')
> test-glmmPQL.R: iteration 1
Saving _problems/test-is_converged-16.R
> test-mmrm.R: mmrm() registered as emmeans extension
> test-mmrm.R: mmrm() registered as car::Anova extension
> test-model_info.R: boundary (singular) fit: see help('isSingular')
> test-nestedLogit.R: list(work = c(0L, 0L, 0L, 0L, 0L, 0L, 0L, 1L, 0L, 0L, 0L, 1L,
> test-nestedLogit.R: 0L, 0L, 0L, 0L, 1L, 1L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L,
> test-nestedLogit.R: 0L, 1L, 1L, 1L, 0L, 1L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 1L, 1L, 1L,
> test-nestedLogit.R: 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 1L, 1L, 1L, 1L, 1L, 1L,
> test-nestedLogit.R: 1L, 1L, 0L, 0L, 0L, 1L, 1L, 1L, 0L, 0L, 0L, 1L, 1L, 0L, 0L, 1L,
> test-nestedLogit.R: 1L, 1L, 1L, 1L, 1L, 0L, 1L, 1L, 1L, 1L, 1L, 0L, 0L, 0L, 0L, 0L,
> test-nestedLogit.R: 1L, 1L, 0L, 0L, 1L, 0L, 0L, 1L, 1L, 1L, 0L, 1L, 1L, 1L, 0L, 0L
> test-nestedLogit.R: ), full = c(1L, 1L, 0L, 1L, 1L, 0L, 0L, 0L, 1L, 1L, 0L, 0L, 0L,
> test-nestedLogit.R: 1L, 0L, 1L, 1L, 0L, 1L, 0L, 0L, 0L, 1L, 1L, 0L, 1L, 1L, 0L, 0L,
> test-nestedLogit.R: 0L, 1L, 1L, 1L, 1L, 0L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L))
> test-polr.R:
> test-polr.R: Re-fitting to get Hessian
> test-polr.R:
> test-polr.R:
> test-polr.R: Re-fitting to get Hessian
> test-polr.R:
> test-survey_coxph.R: Stratified
> test-survey_coxph.R: Independent Sampling design (with replacement)
> test-survey_coxph.R: dpbc <- survey::svydesign(
> test-survey_coxph.R: id = ~1,
> test-survey_coxph.R: prob = ~randprob,
> test-survey_coxph.R: strata = ~edema,
> test-survey_coxph.R: data = subset(pbc, randomized)
> test-survey_coxph.R: )
> test-survey_coxph.R: Stratified Independent Sampling design (with replacement)
> test-survey_coxph.R: dpbc <- survey::svydesign(
> test-survey_coxph.R: id = ~1,
> test-survey_coxph.R: prob = ~randprob,
> test-survey_coxph.R: strata = ~edema,
> test-survey_coxph.R: data = subset(pbc, randomized)
> test-survey_coxph.R: )
> test-survey_coxph.R: Stratified Independent Sampling design (with replacement)
> test-survey_coxph.R: dpbc <- survey::svydesign(
> test-survey_coxph.R: id = ~1,
> test-survey_coxph.R: prob = ~randprob,
> test-survey_coxph.R: strata = ~edema,
> test-survey_coxph.R: data = subset(pbc, randomized)
> test-survey_coxph.R: )
[ FAIL 1 | WARN 5 | SKIP 96 | PASS 3512 ]
══ Skipped tests (96) ══════════════════════════════════════════════════════════
• On CRAN (89): 'test-GLMMadaptive.R:2:1', 'test-averaging.R:1:1',
'test-bias_correction.R:1:1', 'test-blmer.R:262:3', 'test-brms.R:1:1',
'test-brms_aterms.R:1:1', 'test-brms_gr_random_effects.R:1:1',
'test-brms_missing.R:1:1', 'test-brms_mm.R:1:1', 'test-brms_von_mises.R:1:1',
'test-betareg.R:197:5', 'test-clean_names.R:109:3',
'test-clean_parameters.R:1:1', 'test-coxme.R:1:1', 'test-cpglmm.R:152:3',
'test-clmm.R:170:3', 'test-display.R:1:1', 'test-display.R:15:1',
'test-export_table.R:3:1', 'test-export_table.R:7:1',
'test-export_table.R:134:3', 'test-export_table.R:164:3',
'test-export_table.R:193:1', 'test-export_table.R:278:1',
'test-export_table.R:296:3', 'test-export_table.R:328:3',
'test-export_table.R:385:1', 'test-export_table.R:406:3',
'test-export_table.R:470:3', 'test-find_smooth.R:39:3', 'test-fixest.R:2:1',
'test-format_table.R:2:1', 'test-format_table_ci.R:72:1', 'test-gam.R:2:1',
'test-find_random.R:43:3', 'test-get_data.R:507:1',
'test-get_loglikelihood.R:143:3', 'test-get_loglikelihood.R:223:3',
'test-get_predicted.R:2:1', 'test-get_priors.R:1:1',
'test-get_varcov.R:43:3', 'test-get_varcov.R:57:3',
'test-get_datagrid.R:1068:3', 'test-get_datagrid.R:1105:5',
'test-is_converged.R:32:1', 'test-iv_robust.R:120:3', 'test-lavaan.R:1:1',
'test-lcmm.R:1:1', 'test-lme.R:28:3', 'test-lme.R:212:3',
'test-glmmTMB.R:67:3', 'test-glmmTMB.R:767:3', 'test-glmmTMB.R:803:3',
'test-glmmTMB.R:1142:3', 'test-marginaleffects.R:1:1', 'test-mgcv.R:1:1',
'test-mipo.R:1:1', 'test-mlogit.R:1:1', 'test-model_info.R:106:3',
'test-modelbased.R:1:1', 'test-mvrstanarm.R:1:1', 'test-null_model.R:85:3',
'test-panelr-asym.R:165:3', 'test-panelr.R:295:3', 'test-phylolm.R:1:1',
'test-print_parameters.R:1:1', 'test-r2_nakagawa_bernoulli.R:1:1',
'test-r2_nakagawa_beta.R:1:1', 'test-r2_nakagawa_binomial.R:1:1',
'test-r2_nakagawa_gamma.R:1:1', 'test-r2_nakagawa_linear.R:1:1',
'test-r2_nakagawa_negbin.R:1:1', 'test-r2_nakagawa_negbin_zi.R:1:1',
'test-r2_nakagawa_ordered_beta.R:1:1', 'test-r2_nakagawa_poisson.R:1:1',
'test-r2_nakagawa_poisson_zi.R:1:1',
'test-r2_nakagawa_truncated_poisson.R:1:1', 'test-r2_nakagawa_tweedie.R:1:1',
'test-rlmer.R:276:3', 'test-rms.R:1:1', 'test-rqss.R:1:1',
'test-rstanarm.R:1:1', 'test-sdmTMB.R:1:1', 'test-selection.R:2:1',
'test-spatial.R:2:1', 'test-svylme.R:1:1', 'test-tidymodels.R:1:1',
'test-vgam.R:2:1', 'test-weightit.R:1:1'
• On Linux (3): 'test-BayesFactorBF.R:1:1', 'test-MCMCglmm.R:1:1',
'test-get_data.R:161:3'
• Package `logistf` is loaded and breaks `mmrm::mmrm()` (1): 'test-mmrm.R:4:1'
• works interactively (2): 'test-coxph-panel.R:34:3', 'test-coxph.R:38:3'
• {bigglm} is not installed (1): 'test-model_info.R:24:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-is_converged.R:16:3'): is_converged ────────────────────────────
Error in `h(simpleError(msg, call))`: error in evaluating the argument 'a' in selecting a method for function 'solve': object 'Hessian' not found
Backtrace:
▆
1. ├─testthat::expect_true(is_converged(model)) at test-is_converged.R:16:3
2. │ └─testthat::quasi_label(enquo(object), label)
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. ├─insight::is_converged(model)
5. ├─insight:::is_converged.merMod(model)
6. │ ├─base::with(x@optinfo$derivs, Matrix::solve(Hessian, gradient))
7. │ ├─base::with.default(x@optinfo$derivs, Matrix::solve(Hessian, gradient))
8. │ │ └─base::eval(substitute(expr), data, enclos = parent.frame())
9. │ │ └─base::eval(substitute(expr), data, enclos = parent.frame())
10. │ └─Matrix::solve(Hessian, gradient)
11. └─base::.handleSimpleError(...)
12. └─base (local) h(simpleError(msg, call))
[ FAIL 1 | WARN 5 | SKIP 96 | PASS 3512 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 1.4.3
Check: tests
Result: ERROR
Running ‘testthat.R’ [10m/15m]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(insight)
> test_check("insight")
Starting 2 test processes.
> test-find_transformation.R: boundary (singular) fit: see help('isSingular')
> test-gamlss.R: GAMLSS-RS iteration 1: Global Deviance = 365.2328
> test-gamlss.R: GAMLSS-RS iteration 2: Global Deviance = 365.1292
> test-gamlss.R: GAMLSS-RS iteration 3: Global Deviance = 365.1269
> test-gamlss.R: GAMLSS-RS iteration 4: Global Deviance = 365.1268
> test-gamlss.R: GAMLSS-RS iteration 1: Global Deviance = 5779.746
> test-gamlss.R: GAMLSS-RS iteration 2: Global Deviance = 5779.746
> test-gamlss.R: GAMLSS-RS iteration 1: Global Deviance = 703.1164
> test-gamlss.R: GAMLSS-RS iteration
> test-gamlss.R: 2: Global Deviance = 703.1164
> test-get_model.R: Loading required namespace: GPArotation
> test-get_random.R: boundary (singular) fit: see help('isSingular')
> test-glmmPQL.R: iteration 1
Saving _problems/test-is_converged-16.R
> test-mmrm.R: mmrm() registered as emmeans extension
> test-mmrm.R: mmrm() registered as car::Anova extension
> test-model_info.R: boundary (singular) fit: see help('isSingular')
> test-nestedLogit.R: list(work = c(0L, 0L, 0L, 0L, 0L, 0L, 0L, 1L, 0L, 0L, 0L, 1L,
> test-nestedLogit.R: 0L, 0L, 0L, 0L, 1L, 1L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L,
> test-nestedLogit.R: 0L, 1L, 1L, 1L, 0L, 1L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 1L, 1L, 1L,
> test-nestedLogit.R: 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 1L, 1L, 1L, 1L, 1L, 1L,
> test-nestedLogit.R: 1L, 1L, 0L, 0L, 0L, 1L, 1L, 1L, 0L, 0L, 0L, 1L, 1L, 0L, 0L, 1L,
> test-nestedLogit.R: 1L, 1L, 1L, 1L, 1L, 0L, 1L, 1L, 1L, 1L, 1L, 0L, 0L, 0L, 0L, 0L,
> test-nestedLogit.R: 1L, 1L, 0L, 0L, 1L, 0L, 0L, 1L, 1L, 1L, 0L, 1L, 1L, 1L, 0L, 0L
> test-nestedLogit.R: ), full = c(1L, 1L, 0L, 1L, 1L, 0L, 0L, 0L, 1L, 1L, 0L, 0L, 0L,
> test-nestedLogit.R: 1L, 0L, 1L, 1L, 0L, 1L, 0L, 0L, 0L, 1L, 1L, 0L, 1L, 1L, 0L, 0L,
> test-nestedLogit.R: 0L, 1L, 1L, 1L, 1L, 0L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L))
> test-polr.R:
> test-polr.R: Re-fitting to get Hessian
> test-polr.R:
> test-polr.R:
> test-polr.R: Re-fitting to get Hessian
> test-polr.R:
> test-survey_coxph.R: Stratified Independent Sampling design (with replacement)
> test-survey_coxph.R: dpbc <- survey::svydesign(
> test-survey_coxph.R: id = ~1,
> test-survey_coxph.R: prob = ~randprob,
> test-survey_coxph.R: strata = ~edema,
> test-survey_coxph.R: data = subset(pbc, randomized)
> test-survey_coxph.R: )
> test-survey_coxph.R: Stratified Independent Sampling design (with replacement)
> test-survey_coxph.R: dpbc <- survey::svydesign(
> test-survey_coxph.R: id = ~1,
> test-survey_coxph.R: prob = ~randprob,
> test-survey_coxph.R: strata = ~edema,
> test-survey_coxph.R: data = subset(pbc, randomized)
> test-survey_coxph.R: )
> test-survey_coxph.R: Stratified Independent Sampling design (with replacement)
> test-survey_coxph.R: dpbc <- survey::svydesign(
> test-survey_coxph.R: id = ~1,
> test-survey_coxph.R: prob = ~randprob,
> test-survey_coxph.R: strata = ~edema,
> test-survey_coxph.R: data = subset(pbc, randomized)
> test-survey_coxph.R: )
[ FAIL 1 | WARN 5 | SKIP 96 | PASS 3512 ]
══ Skipped tests (96) ══════════════════════════════════════════════════════════
• On CRAN (89): 'test-GLMMadaptive.R:2:1', 'test-averaging.R:1:1',
'test-bias_correction.R:1:1', 'test-blmer.R:262:3', 'test-brms.R:1:1',
'test-brms_aterms.R:1:1', 'test-brms_gr_random_effects.R:1:1',
'test-brms_missing.R:1:1', 'test-brms_mm.R:1:1', 'test-brms_von_mises.R:1:1',
'test-betareg.R:197:5', 'test-clean_names.R:109:3',
'test-clean_parameters.R:1:1', 'test-coxme.R:1:1', 'test-clmm.R:170:3',
'test-cpglmm.R:152:3', 'test-display.R:1:1', 'test-display.R:15:1',
'test-export_table.R:3:1', 'test-export_table.R:7:1',
'test-export_table.R:134:3', 'test-export_table.R:164:3',
'test-export_table.R:193:1', 'test-export_table.R:278:1',
'test-export_table.R:296:3', 'test-export_table.R:328:3',
'test-export_table.R:385:1', 'test-export_table.R:406:3',
'test-export_table.R:470:3', 'test-find_random.R:43:3', 'test-fixest.R:2:1',
'test-format_table.R:2:1', 'test-format_table_ci.R:72:1', 'test-gam.R:2:1',
'test-find_smooth.R:39:3', 'test-get_data.R:507:1',
'test-get_loglikelihood.R:143:3', 'test-get_loglikelihood.R:223:3',
'test-get_predicted.R:2:1', 'test-get_priors.R:1:1',
'test-get_varcov.R:43:3', 'test-get_varcov.R:57:3',
'test-get_datagrid.R:1068:3', 'test-get_datagrid.R:1105:5',
'test-is_converged.R:32:1', 'test-iv_robust.R:120:3', 'test-lavaan.R:1:1',
'test-lcmm.R:1:1', 'test-lme.R:28:3', 'test-lme.R:212:3',
'test-glmmTMB.R:67:3', 'test-glmmTMB.R:767:3', 'test-glmmTMB.R:803:3',
'test-glmmTMB.R:1142:3', 'test-marginaleffects.R:1:1', 'test-mgcv.R:1:1',
'test-mipo.R:1:1', 'test-mlogit.R:1:1', 'test-model_info.R:106:3',
'test-modelbased.R:1:1', 'test-mvrstanarm.R:1:1', 'test-null_model.R:85:3',
'test-panelr-asym.R:165:3', 'test-panelr.R:295:3', 'test-phylolm.R:1:1',
'test-print_parameters.R:1:1', 'test-r2_nakagawa_bernoulli.R:1:1',
'test-r2_nakagawa_beta.R:1:1', 'test-r2_nakagawa_binomial.R:1:1',
'test-r2_nakagawa_gamma.R:1:1', 'test-r2_nakagawa_linear.R:1:1',
'test-r2_nakagawa_negbin.R:1:1', 'test-r2_nakagawa_negbin_zi.R:1:1',
'test-r2_nakagawa_ordered_beta.R:1:1', 'test-r2_nakagawa_poisson.R:1:1',
'test-r2_nakagawa_poisson_zi.R:1:1',
'test-r2_nakagawa_truncated_poisson.R:1:1', 'test-r2_nakagawa_tweedie.R:1:1',
'test-rlmer.R:276:3', 'test-rms.R:1:1', 'test-rqss.R:1:1',
'test-rstanarm.R:1:1', 'test-sdmTMB.R:1:1', 'test-selection.R:2:1',
'test-spatial.R:2:1', 'test-svylme.R:1:1', 'test-tidymodels.R:1:1',
'test-vgam.R:2:1', 'test-weightit.R:1:1'
• On Linux (3): 'test-BayesFactorBF.R:1:1', 'test-MCMCglmm.R:1:1',
'test-get_data.R:161:3'
• Package `logistf` is loaded and breaks `mmrm::mmrm()` (1): 'test-mmrm.R:4:1'
• works interactively (2): 'test-coxph-panel.R:34:3', 'test-coxph.R:38:3'
• {bigglm} is not installed (1): 'test-model_info.R:24:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-is_converged.R:16:3'): is_converged ────────────────────────────
Error in `h(simpleError(msg, call))`: error in evaluating the argument 'a' in selecting a method for function 'solve': object 'Hessian' not found
Backtrace:
▆
1. ├─testthat::expect_true(is_converged(model)) at test-is_converged.R:16:3
2. │ └─testthat::quasi_label(enquo(object), label)
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. ├─insight::is_converged(model)
5. ├─insight:::is_converged.merMod(model)
6. │ ├─base::with(x@optinfo$derivs, Matrix::solve(Hessian, gradient))
7. │ ├─base::with.default(x@optinfo$derivs, Matrix::solve(Hessian, gradient))
8. │ │ └─base::eval(substitute(expr), data, enclos = parent.frame())
9. │ │ └─base::eval(substitute(expr), data, enclos = parent.frame())
10. │ └─Matrix::solve(Hessian, gradient)
11. └─base::.handleSimpleError(...)
12. └─base (local) h(simpleError(msg, call))
[ FAIL 1 | WARN 5 | SKIP 96 | PASS 3512 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 1.4.3
Check: examples
Result: ERROR
Running examples in ‘insight-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: is_converged
> ### Title: Convergence test for mixed effects models
> ### Aliases: is_converged
>
> ### ** Examples
>
> ## Don't show:
> if (require("lme4", quietly = TRUE)) withAutoprint({ # examplesIf
+ ## End(Don't show)
+ library(lme4)
+ data(cbpp)
+ set.seed(1)
+ cbpp$x <- rnorm(nrow(cbpp))
+ cbpp$x2 <- runif(nrow(cbpp))
+
+ model <- glmer(
+ cbind(incidence, size - incidence) ~ period + x + x2 + (1 + x | herd),
+ data = cbpp,
+ family = binomial()
+ )
+
+ is_converged(model)
+ ## Don't show:
+ }) # examplesIf
> library(lme4)
> data(cbpp)
> set.seed(1)
> cbpp$x <- rnorm(nrow(cbpp))
> cbpp$x2 <- runif(nrow(cbpp))
> model <- glmer(cbind(incidence, size - incidence) ~ period + x + x2 +
+ (1 + x | herd), data = cbpp, family = binomial())
boundary (singular) fit: see help('isSingular')
> is_converged(model)
Error in h(simpleError(msg, call)) :
error in evaluating the argument 'a' in selecting a method for function 'solve': object 'Hessian' not found
Calls: withAutoprint ... eval -> eval -> <Anonymous> -> .handleSimpleError -> h
Execution halted
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
find_algorithm 3.897 0.279 5.608
Flavor: r-patched-linux-x86_64
Version: 1.4.3
Check: tests
Result: ERROR
Running ‘testthat.R’ [320s/166s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(insight)
> test_check("insight")
Starting 2 test processes.
> test-find_transformation.R: boundary (singular) fit: see help('isSingular')
> test-gamlss.R: GAMLSS-RS iteration 1: Global Deviance = 365.2328
> test-gamlss.R: GAMLSS-RS iteration 2: Global Deviance = 365.1292
> test-gamlss.R: GAMLSS-RS iteration 3: Global Deviance = 365.1269
> test-gamlss.R: GAMLSS-RS iteration 4: Global Deviance = 365.1268
> test-gamlss.R: GAMLSS-RS iteration 1: Global Deviance = 5779.746
> test-gamlss.R: GAMLSS-RS iteration 2: Global Deviance = 5779.746
> test-gamlss.R: GAMLSS-RS iteration 1: Global Deviance = 703.1164
> test-gamlss.R: GAMLSS-RS iteration 2: Global Deviance = 703.1164
> test-get_model.R: Loading required namespace: GPArotation
> test-get_random.R: boundary (singular) fit: see help('isSingular')
> test-glmmPQL.R: iteration 1
Saving _problems/test-is_converged-16.R
> test-mmrm.R: mmrm() registered as emmeans extension
> test-mmrm.R: mmrm() registered as car::Anova extension
> test-model_info.R: boundary (singular) fit: see help('isSingular')
> test-nestedLogit.R: list(work = c(0L, 0L, 0L, 0L, 0L, 0L, 0L, 1L, 0L, 0L, 0L, 1L,
> test-nestedLogit.R: 0L, 0L, 0L, 0L, 1L, 1L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L,
> test-nestedLogit.R: 0L, 1L, 1L, 1L, 0L, 1L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 1L, 1L, 1L,
> test-nestedLogit.R: 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 1L, 1L, 1L, 1L, 1L, 1L,
> test-nestedLogit.R: 1L, 1L, 0L, 0L, 0L, 1L, 1L, 1L, 0L, 0L, 0L, 1L, 1L, 0L, 0L, 1L,
> test-nestedLogit.R: 1L, 1L, 1L, 1L, 1L, 0L, 1L, 1L, 1L, 1L, 1L, 0L, 0L, 0L, 0L, 0L,
> test-nestedLogit.R: 1L, 1L, 0L, 0L, 1L, 0L, 0L, 1L, 1L, 1L, 0L, 1L, 1L, 1L, 0L, 0L
> test-nestedLogit.R: ), full = c(1L, 1L, 0L, 1L, 1L, 0L, 0L, 0L, 1L, 1L, 0L, 0L, 0L,
> test-nestedLogit.R: 1L, 0L, 1L, 1L, 0L, 1L, 0L, 0L, 0L, 1L, 1L, 0L, 1L, 1L, 0L, 0L,
> test-nestedLogit.R: 0L, 1L, 1L, 1L, 1L, 0L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L))
> test-polr.R:
> test-polr.R: Re-fitting to get Hessian
> test-polr.R:
> test-polr.R:
> test-polr.R: Re-fitting to get Hessian
> test-polr.R:
> test-survey_coxph.R: Stratified Independent Sampling design (with replacement)
> test-survey_coxph.R: dpbc <- survey::svydesign(
> test-survey_coxph.R: id = ~1,
> test-survey_coxph.R: prob = ~randprob,
> test-survey_coxph.R: strata = ~edema,
> test-survey_coxph.R: data = subset(pbc, randomized)
> test-survey_coxph.R: )
> test-survey_coxph.R: Stratified Independent Sampling design (with replacement)
> test-survey_coxph.R: dpbc <- survey::svydesign(
> test-survey_coxph.R: id = ~1,
> test-survey_coxph.R: prob = ~randprob,
> test-survey_coxph.R: strata = ~edema,
> test-survey_coxph.R: data = subset(pbc, randomized)
> test-survey_coxph.R: )
> test-survey_coxph.R: Stratified Independent Sampling design (with replacement)
> test-survey_coxph.R: dpbc <- survey::svydesign(
> test-survey_coxph.R: id = ~1,
> test-survey_coxph.R: prob = ~randprob,
> test-survey_coxph.R: strata = ~edema,
> test-survey_coxph.R: data = subset(pbc, randomized)
> test-survey_coxph.R: )
[ FAIL 1 | WARN 4 | SKIP 96 | PASS 3512 ]
══ Skipped tests (96) ══════════════════════════════════════════════════════════
• On CRAN (89): 'test-GLMMadaptive.R:2:1', 'test-averaging.R:1:1',
'test-bias_correction.R:1:1', 'test-betareg.R:197:5', 'test-brms.R:1:1',
'test-brms_aterms.R:1:1', 'test-brms_gr_random_effects.R:1:1',
'test-brms_missing.R:1:1', 'test-brms_mm.R:1:1', 'test-brms_von_mises.R:1:1',
'test-blmer.R:262:3', 'test-clean_names.R:109:3',
'test-clean_parameters.R:1:1', 'test-coxme.R:1:1', 'test-cpglmm.R:152:3',
'test-clmm.R:170:3', 'test-display.R:1:1', 'test-display.R:15:1',
'test-export_table.R:3:1', 'test-export_table.R:7:1',
'test-export_table.R:134:3', 'test-export_table.R:164:3',
'test-export_table.R:193:1', 'test-export_table.R:278:1',
'test-export_table.R:296:3', 'test-export_table.R:328:3',
'test-export_table.R:385:1', 'test-export_table.R:406:3',
'test-export_table.R:470:3', 'test-find_smooth.R:39:3', 'test-fixest.R:2:1',
'test-find_random.R:43:3', 'test-format_table.R:2:1',
'test-format_table_ci.R:72:1', 'test-gam.R:2:1', 'test-get_data.R:507:1',
'test-get_loglikelihood.R:143:3', 'test-get_loglikelihood.R:223:3',
'test-get_predicted.R:2:1', 'test-get_priors.R:1:1',
'test-get_varcov.R:43:3', 'test-get_varcov.R:57:3',
'test-get_datagrid.R:1068:3', 'test-get_datagrid.R:1105:5',
'test-is_converged.R:32:1', 'test-iv_robust.R:120:3', 'test-lavaan.R:1:1',
'test-lcmm.R:1:1', 'test-lme.R:28:3', 'test-lme.R:212:3',
'test-glmmTMB.R:67:3', 'test-glmmTMB.R:767:3', 'test-glmmTMB.R:803:3',
'test-glmmTMB.R:1142:3', 'test-marginaleffects.R:1:1', 'test-mgcv.R:1:1',
'test-mipo.R:1:1', 'test-mlogit.R:1:1', 'test-model_info.R:106:3',
'test-modelbased.R:1:1', 'test-mvrstanarm.R:1:1', 'test-null_model.R:85:3',
'test-panelr-asym.R:165:3', 'test-panelr.R:295:3', 'test-phylolm.R:1:1',
'test-print_parameters.R:1:1', 'test-r2_nakagawa_bernoulli.R:1:1',
'test-r2_nakagawa_beta.R:1:1', 'test-r2_nakagawa_binomial.R:1:1',
'test-r2_nakagawa_gamma.R:1:1', 'test-r2_nakagawa_linear.R:1:1',
'test-r2_nakagawa_negbin.R:1:1', 'test-r2_nakagawa_negbin_zi.R:1:1',
'test-r2_nakagawa_ordered_beta.R:1:1', 'test-r2_nakagawa_poisson.R:1:1',
'test-r2_nakagawa_poisson_zi.R:1:1',
'test-r2_nakagawa_truncated_poisson.R:1:1', 'test-r2_nakagawa_tweedie.R:1:1',
'test-rlmer.R:276:3', 'test-rms.R:1:1', 'test-rqss.R:1:1',
'test-rstanarm.R:1:1', 'test-sdmTMB.R:1:1', 'test-selection.R:2:1',
'test-spatial.R:2:1', 'test-svylme.R:1:1', 'test-tidymodels.R:1:1',
'test-vgam.R:2:1', 'test-weightit.R:1:1'
• On Linux (3): 'test-BayesFactorBF.R:1:1', 'test-MCMCglmm.R:1:1',
'test-get_data.R:161:3'
• Package `logistf` is loaded and breaks `mmrm::mmrm()` (1): 'test-mmrm.R:4:1'
• works interactively (2): 'test-coxph-panel.R:34:3', 'test-coxph.R:38:3'
• {bigglm} is not installed (1): 'test-model_info.R:24:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-is_converged.R:16:3'): is_converged ────────────────────────────
Error in `h(simpleError(msg, call))`: error in evaluating the argument 'a' in selecting a method for function 'solve': object 'Hessian' not found
Backtrace:
▆
1. ├─testthat::expect_true(is_converged(model)) at test-is_converged.R:16:3
2. │ └─testthat::quasi_label(enquo(object), label)
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. ├─insight::is_converged(model)
5. ├─insight:::is_converged.merMod(model)
6. │ ├─base::with(x@optinfo$derivs, Matrix::solve(Hessian, gradient))
7. │ ├─base::with.default(x@optinfo$derivs, Matrix::solve(Hessian, gradient))
8. │ │ └─base::eval(substitute(expr), data, enclos = parent.frame())
9. │ │ └─base::eval(substitute(expr), data, enclos = parent.frame())
10. │ └─Matrix::solve(Hessian, gradient)
11. └─base::.handleSimpleError(...)
12. └─base (local) h(simpleError(msg, call))
[ FAIL 1 | WARN 4 | SKIP 96 | PASS 3512 ]
Error:
! Test failures.
Execution halted
Flavor: r-patched-linux-x86_64
Version: 1.4.3
Check: tests
Result: ERROR
Running 'testthat.R' [168s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> library(insight)
> test_check("insight")
Starting 2 test processes.
> test-find_transformation.R: boundary (singular) fit: see help('isSingular')
> test-gamlss.R: GAMLSS-RS iteration 1: Global Deviance = 365.2328
> test-gamlss.R: GAMLSS-RS iteration 2: Global Deviance = 365.1292
> test-gamlss.R: GAMLSS-RS iteration 3: Global Deviance = 365.1269
> test-gamlss.R: GAMLSS-RS iteration 4: Global Deviance = 365.1268
> test-gamlss.R: GAMLSS-RS iteration 1: Global Deviance = 5779.746
> test-gamlss.R: GAMLSS-RS iteration 2: Global Deviance = 5779.746
> test-gamlss.R: GAMLSS-RS iteration 1: Global Deviance = 703.1164
> test-gamlss.R: GAMLSS-RS iteration 2: Global Deviance = 703.1164
> test-get_model.R: Loading required namespace: GPArotation
> test-get_random.R: boundary (singular) fit: see help('isSingular')
> test-glmmPQL.R: iteration 1
Saving _problems/test-is_converged-16.R
> test-mmrm.R: mmrm() registered as emmeans extension
> test-mmrm.R: mmrm() registered as car::Anova extension
> test-model_info.R: boundary (singular) fit: see help('isSingular')
> test-nestedLogit.R: list(work = c(0L, 0L, 0L, 0L, 0L, 0L, 0L, 1L, 0L, 0L, 0L, 1L,
> test-nestedLogit.R: 0L, 0L, 0L, 0L, 1L, 1L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L,
> test-nestedLogit.R: 0L, 1L, 1L, 1L, 0L, 1L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 1L, 1L, 1L,
> test-nestedLogit.R: 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 1L, 1L, 1L, 1L, 1L, 1L,
> test-nestedLogit.R: 1L, 1L, 0L, 0L, 0L, 1L, 1L, 1L, 0L, 0L, 0L, 1L, 1L, 0L, 0L, 1L,
> test-nestedLogit.R: 1L, 1L, 1L, 1L, 1L, 0L, 1L, 1L, 1L, 1L, 1L, 0L, 0L, 0L, 0L, 0L,
> test-nestedLogit.R: 1L, 1L, 0L, 0L, 1L, 0L, 0L, 1L, 1L, 1L, 0L, 1L, 1L, 1L, 0L, 0L
> test-nestedLogit.R: ), full = c(1L, 1L, 0L, 1L, 1L, 0L, 0L, 0L, 1L, 1L, 0L, 0L, 0L,
> test-nestedLogit.R: 1L, 0L, 1L, 1L, 0L, 1L, 0L, 0L, 0L, 1L, 1L, 0L, 1L, 1L, 0L, 0L,
> test-nestedLogit.R: 0L, 1L, 1L, 1L, 1L, 0L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L))
> test-polr.R:
> test-polr.R: Re-fitting to get Hessian
> test-polr.R:
> test-polr.R:
> test-polr.R: Re-fitting to get Hessian
> test-polr.R:
> test-survey_coxph.R: Stratified Independent Sampling design (with replacement)
> test-survey_coxph.R: dpbc <- survey::svydesign(
> test-survey_coxph.R: id = ~1,
> test-survey_coxph.R: prob = ~randprob,
> test-survey_coxph.R: strata = ~edema,
> test-survey_coxph.R: data = subset(pbc, randomized)
> test-survey_coxph.R: )
> test-survey_coxph.R: Stratified Independent Sampling design (with replacement)
> test-survey_coxph.R: dpbc <- survey::svydesign(
> test-survey_coxph.R: id = ~1,
> test-survey_coxph.R: prob = ~randprob,
> test-survey_coxph.R: strata = ~edema,
> test-survey_coxph.R: data = subset(pbc, randomized)
> test-survey_coxph.R: )
> test-survey_coxph.R: Stratified Independent Sampling design (with replacement)
> test-survey_coxph.R: dpbc <- survey::svydesign(
> test-survey_coxph.R: id = ~1,
> test-survey_coxph.R: prob = ~randprob,
> test-survey_coxph.R: strata = ~edema,
> test-survey_coxph.R: data = subset(pbc, randomized)
> test-survey_coxph.R: )
[ FAIL 1 | WARN 4 | SKIP 93 | PASS 3611 ]
══ Skipped tests (93) ══════════════════════════════════════════════════════════
• On CRAN (89): 'test-GLMMadaptive.R:2:1', 'test-averaging.R:1:1',
'test-bias_correction.R:1:1', 'test-betareg.R:197:5', 'test-brms.R:1:1',
'test-brms_aterms.R:1:1', 'test-brms_gr_random_effects.R:1:1',
'test-brms_missing.R:1:1', 'test-blmer.R:262:3', 'test-brms_mm.R:1:1',
'test-brms_von_mises.R:1:1', 'test-clean_names.R:109:3',
'test-clean_parameters.R:1:1', 'test-coxme.R:1:1', 'test-cpglmm.R:152:3',
'test-clmm.R:170:3', 'test-display.R:1:1', 'test-display.R:15:1',
'test-export_table.R:3:1', 'test-export_table.R:7:1',
'test-export_table.R:134:3', 'test-export_table.R:164:3',
'test-export_table.R:193:1', 'test-export_table.R:278:1',
'test-export_table.R:296:3', 'test-export_table.R:328:3',
'test-export_table.R:385:1', 'test-export_table.R:406:3',
'test-export_table.R:470:3', 'test-find_smooth.R:39:3', 'test-fixest.R:2:1',
'test-find_random.R:43:3', 'test-format_table.R:2:1',
'test-format_table_ci.R:72:1', 'test-gam.R:2:1', 'test-get_data.R:507:1',
'test-get_loglikelihood.R:143:3', 'test-get_loglikelihood.R:223:3',
'test-get_predicted.R:2:1', 'test-get_priors.R:1:1',
'test-get_varcov.R:43:3', 'test-get_varcov.R:57:3',
'test-get_datagrid.R:1068:3', 'test-get_datagrid.R:1105:5',
'test-is_converged.R:32:1', 'test-iv_robust.R:120:3', 'test-lavaan.R:1:1',
'test-lcmm.R:1:1', 'test-lme.R:28:3', 'test-lme.R:212:3',
'test-glmmTMB.R:67:3', 'test-glmmTMB.R:767:3', 'test-glmmTMB.R:803:3',
'test-glmmTMB.R:1142:3', 'test-marginaleffects.R:1:1', 'test-mgcv.R:1:1',
'test-mipo.R:1:1', 'test-mlogit.R:1:1', 'test-model_info.R:106:3',
'test-modelbased.R:1:1', 'test-mvrstanarm.R:1:1', 'test-null_model.R:85:3',
'test-panelr-asym.R:165:3', 'test-panelr.R:295:3', 'test-phylolm.R:1:1',
'test-print_parameters.R:1:1', 'test-r2_nakagawa_bernoulli.R:1:1',
'test-r2_nakagawa_beta.R:1:1', 'test-r2_nakagawa_binomial.R:1:1',
'test-r2_nakagawa_gamma.R:1:1', 'test-r2_nakagawa_linear.R:1:1',
'test-r2_nakagawa_negbin.R:1:1', 'test-r2_nakagawa_negbin_zi.R:1:1',
'test-r2_nakagawa_ordered_beta.R:1:1', 'test-r2_nakagawa_poisson.R:1:1',
'test-r2_nakagawa_poisson_zi.R:1:1',
'test-r2_nakagawa_truncated_poisson.R:1:1', 'test-r2_nakagawa_tweedie.R:1:1',
'test-rlmer.R:276:3', 'test-rms.R:1:1', 'test-rqss.R:1:1',
'test-rstanarm.R:1:1', 'test-sdmTMB.R:1:1', 'test-selection.R:2:1',
'test-spatial.R:2:1', 'test-svylme.R:1:1', 'test-tidymodels.R:1:1',
'test-vgam.R:2:1', 'test-weightit.R:1:1'
• Package `logistf` is loaded and breaks `mmrm::mmrm()` (1): 'test-mmrm.R:4:1'
• works interactively (2): 'test-coxph-panel.R:34:3', 'test-coxph.R:38:3'
• {bigglm} is not installed (1): 'test-model_info.R:24:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-is_converged.R:16:3'): is_converged ────────────────────────────
Error in `h(simpleError(msg, call))`: error in evaluating the argument 'a' in selecting a method for function 'solve': object 'Hessian' not found
Backtrace:
▆
1. ├─testthat::expect_true(is_converged(model)) at test-is_converged.R:16:3
2. │ └─testthat::quasi_label(enquo(object), label)
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. ├─insight::is_converged(model)
5. ├─insight:::is_converged.merMod(model)
6. │ ├─base::with(x@optinfo$derivs, Matrix::solve(Hessian, gradient))
7. │ ├─base::with.default(x@optinfo$derivs, Matrix::solve(Hessian, gradient))
8. │ │ └─base::eval(substitute(expr), data, enclos = parent.frame())
9. │ │ └─base::eval(substitute(expr), data, enclos = parent.frame())
10. │ └─Matrix::solve(Hessian, gradient)
11. └─base::.handleSimpleError(...)
12. └─base (local) h(simpleError(msg, call))
[ FAIL 1 | WARN 4 | SKIP 93 | PASS 3611 ]
Error:
! Test failures.
Execution halted
Flavor: r-release-windows-x86_64
Version: 1.4.3
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: 'fungible'
Flavor: r-oldrel-windows-x86_64
Version: 1.4.3
Check: tests
Result: ERROR
Running 'testthat.R' [227s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> library(insight)
> test_check("insight")
Starting 2 test processes.
> test-find_transformation.R: boundary (singular) fit: see help('isSingular')
> test-gamlss.R: GAMLSS-RS iteration 1: Global Deviance = 365.2328
> test-gamlss.R: GAMLSS-RS iteration 2: Global Deviance = 365.1292
> test-gamlss.R: GAMLSS-RS iteration 3: Global Deviance = 365.1269
> test-gamlss.R: GAMLSS-RS iteration 4: Global Deviance = 365.1268
> test-gamlss.R: GAMLSS-RS iteration 1: Global Deviance = 5779.746
> test-gamlss.R: GAMLSS-RS iteration 2: Global Deviance = 5779.746
> test-gamlss.R: GAMLSS-RS iteration 1: Global Deviance = 703.1164
> test-gamlss.R: GAMLSS-RS iteration 2: Global Deviance = 703.1164
> test-get_model.R: Loading required namespace: GPArotation
> test-get_random.R: boundary (singular) fit: see help('isSingular')
> test-glmmPQL.R: iteration 1
Saving _problems/test-is_converged-16.R
> test-mmrm.R: mmrm() registered as emmeans extension
> test-mmrm.R: mmrm() registered as car::Anova extension
> test-model_info.R: boundary (singular) fit: see help('isSingular')
> test-nestedLogit.R: list(work = c(0L, 0L, 0L, 0L, 0L, 0L, 0L, 1L, 0L, 0L, 0L, 1L,
> test-nestedLogit.R: 0L, 0L, 0L, 0L, 1L, 1L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L,
> test-nestedLogit.R: 0L, 1L, 1L, 1L, 0L, 1L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 1L, 1L, 1L,
> test-nestedLogit.R: 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 1L, 1L, 1L, 1L, 1L, 1L,
> test-nestedLogit.R: 1L, 1L, 0L, 0L, 0L, 1L, 1L, 1L, 0L, 0L, 0L, 1L, 1L, 0L, 0L, 1L,
> test-nestedLogit.R: 1L, 1L, 1L, 1L, 1L, 0L, 1L, 1L, 1L, 1L, 1L, 0L, 0L, 0L, 0L, 0L,
> test-nestedLogit.R: 1L, 1L, 0L, 0L, 1L, 0L, 0L, 1L, 1L, 1L, 0L, 1L, 1L, 1L, 0L, 0L
> test-nestedLogit.R: ), full = c(1L, 1L, 0L, 1L, 1L, 0L, 0L, 0L, 1L, 1L, 0L, 0L, 0L,
> test-nestedLogit.R: 1L, 0L, 1L, 1L, 0L, 1L, 0L, 0L, 0L, 1L, 1L, 0L, 1L, 1L, 0L, 0L,
> test-nestedLogit.R: 0L, 1L, 1L, 1L, 1L, 0L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L))
> test-polr.R:
> test-polr.R: Re-fitting to get Hessian
> test-polr.R:
> test-polr.R:
> test-polr.R: Re-fitting to get Hessian
> test-polr.R:
> test-survey_coxph.R: Stratified Independent Sampling design (with replacement)
> test-survey_coxph.R: dpbc <- survey::svydesign(
> test-survey_coxph.R: id = ~1,
> test-survey_coxph.R: prob = ~randprob,
> test-survey_coxph.R: strata = ~edema,
> test-survey_coxph.R: data = subset(pbc, randomized)
> test-survey_coxph.R: )
> test-survey_coxph.R: Stratified Independent Sampling design (with replacement)
> test-survey_coxph.R: dpbc <- survey::svydesign(
> test-survey_coxph.R: id = ~1,
> test-survey_coxph.R: prob = ~randprob,
> test-survey_coxph.R: strata = ~edema,
> test-survey_coxph.R: data = subset(pbc, randomized)
> test-survey_coxph.R: )
> test-survey_coxph.R: Stratified Independent Sampling design (with replacement)
> test-survey_coxph.R: dpbc <- survey::svydesign(
> test-survey_coxph.R: id = ~1,
> test-survey_coxph.R: prob = ~randprob,
> test-survey_coxph.R: strata = ~edema,
> test-survey_coxph.R: data = subset(pbc, randomized)
> test-survey_coxph.R: )
[ FAIL 1 | WARN 4 | SKIP 96 | PASS 3604 ]
══ Skipped tests (96) ══════════════════════════════════════════════════════════
• On CRAN (89): 'test-GLMMadaptive.R:2:1', 'test-averaging.R:1:1',
'test-bias_correction.R:1:1', 'test-betareg.R:197:5', 'test-brms.R:1:1',
'test-brms_aterms.R:1:1', 'test-blmer.R:262:3',
'test-brms_gr_random_effects.R:1:1', 'test-brms_missing.R:1:1',
'test-brms_mm.R:1:1', 'test-brms_von_mises.R:1:1',
'test-clean_names.R:109:3', 'test-clean_parameters.R:1:1',
'test-coxme.R:1:1', 'test-cpglmm.R:152:3', 'test-clmm.R:170:3',
'test-display.R:1:1', 'test-display.R:15:1', 'test-export_table.R:3:1',
'test-export_table.R:7:1', 'test-export_table.R:134:3',
'test-export_table.R:164:3', 'test-export_table.R:193:1',
'test-export_table.R:278:1', 'test-export_table.R:296:3',
'test-export_table.R:328:3', 'test-export_table.R:385:1',
'test-export_table.R:406:3', 'test-export_table.R:470:3',
'test-find_smooth.R:39:3', 'test-fixest.R:2:1', 'test-find_random.R:43:3',
'test-format_table.R:2:1', 'test-format_table_ci.R:72:1', 'test-gam.R:2:1',
'test-get_data.R:507:1', 'test-get_loglikelihood.R:143:3',
'test-get_loglikelihood.R:223:3', 'test-get_predicted.R:2:1',
'test-get_priors.R:1:1', 'test-get_varcov.R:43:3', 'test-get_varcov.R:57:3',
'test-get_datagrid.R:1068:3', 'test-get_datagrid.R:1105:5',
'test-is_converged.R:32:1', 'test-iv_robust.R:120:3', 'test-lavaan.R:1:1',
'test-lcmm.R:1:1', 'test-lme.R:28:3', 'test-lme.R:212:3',
'test-glmmTMB.R:67:3', 'test-glmmTMB.R:767:3', 'test-glmmTMB.R:803:3',
'test-glmmTMB.R:1142:3', 'test-marginaleffects.R:1:1', 'test-mgcv.R:1:1',
'test-mipo.R:1:1', 'test-mlogit.R:1:1', 'test-model_info.R:106:3',
'test-modelbased.R:1:1', 'test-mvrstanarm.R:1:1', 'test-null_model.R:85:3',
'test-panelr-asym.R:165:3', 'test-panelr.R:295:3', 'test-phylolm.R:1:1',
'test-print_parameters.R:1:1', 'test-r2_nakagawa_bernoulli.R:1:1',
'test-r2_nakagawa_beta.R:1:1', 'test-r2_nakagawa_binomial.R:1:1',
'test-r2_nakagawa_gamma.R:1:1', 'test-r2_nakagawa_linear.R:1:1',
'test-r2_nakagawa_negbin.R:1:1', 'test-r2_nakagawa_negbin_zi.R:1:1',
'test-r2_nakagawa_ordered_beta.R:1:1', 'test-r2_nakagawa_poisson.R:1:1',
'test-r2_nakagawa_poisson_zi.R:1:1',
'test-r2_nakagawa_truncated_poisson.R:1:1', 'test-r2_nakagawa_tweedie.R:1:1',
'test-rlmer.R:276:3', 'test-rms.R:1:1', 'test-rqss.R:1:1',
'test-rstanarm.R:1:1', 'test-sdmTMB.R:1:1', 'test-selection.R:2:1',
'test-spatial.R:2:1', 'test-svylme.R:1:1', 'test-tidymodels.R:1:1',
'test-vgam.R:2:1', 'test-weightit.R:1:1'
• Package `logistf` is loaded and breaks `mmrm::mmrm()` (1): 'test-mmrm.R:4:1'
• getRversion() < "4.5.0" is TRUE (3): 'test-aov.R:2:3', 'test-dbart.R:2:1',
'test-get_modelmatrix.R:127:3'
• works interactively (2): 'test-coxph-panel.R:34:3', 'test-coxph.R:38:3'
• {bigglm} is not installed (1): 'test-model_info.R:24:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-is_converged.R:16:3'): is_converged ────────────────────────────
Error in `h(simpleError(msg, call))`: error in evaluating the argument 'a' in selecting a method for function 'solve': object 'Hessian' not found
Backtrace:
▆
1. ├─testthat::expect_true(is_converged(model)) at test-is_converged.R:16:3
2. │ └─testthat::quasi_label(enquo(object), label)
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. ├─insight::is_converged(model)
5. ├─insight:::is_converged.merMod(model)
6. │ ├─base::with(x@optinfo$derivs, Matrix::solve(Hessian, gradient))
7. │ ├─base::with.default(x@optinfo$derivs, Matrix::solve(Hessian, gradient))
8. │ │ └─base::eval(substitute(expr), data, enclos = parent.frame())
9. │ │ └─base::eval(substitute(expr), data, enclos = parent.frame())
10. │ └─Matrix::solve(Hessian, gradient)
11. └─base::.handleSimpleError(...)
12. └─base (local) h(simpleError(msg, call))
[ FAIL 1 | WARN 4 | SKIP 96 | PASS 3604 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-windows-x86_64
Current CRAN status: OK: 13
Current CRAN status: NOTE: 2, OK: 11
Version: 0.28.3
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘M3C’
Flavor: r-oldrel-macos-arm64
Version: 0.28.3
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: 'EGAnet'
Flavor: r-oldrel-windows-x86_64
Current CRAN status: ERROR: 1, NOTE: 1, OK: 11
Version: 0.15.2
Check: Rd files
Result: NOTE
checkRd: (-1) check_predictions.Rd:74: height/width attributes should be in pixels
Flavor: r-devel-linux-x86_64-debian-clang
Version: 0.15.3
Check: tests
Result: ERROR
Running ‘testthat.R’ [19s/10s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(performance)
>
> test_check("performance")
Starting 2 test processes.
> test-check_itemscale.R: Some of the values are negative. Maybe affected items need to be
> test-check_itemscale.R: reverse-coded, e.g. using `datawizard::reverse()`.
> test-check_itemscale.R: Some of the values are negative. Maybe affected items need to be
> test-check_itemscale.R: reverse-coded, e.g. using `datawizard::reverse()`.
> test-check_itemscale.R: Some of the values are negative. Maybe affected items need to be
> test-check_itemscale.R: reverse-coded, e.g. using `datawizard::reverse()`.
> test-check_itemscale.R: Some of the values are negative. Maybe affected items need to be
> test-check_itemscale.R: reverse-coded, e.g. using `datawizard::reverse()`.
> test-check_itemscale.R: Some of the values are negative. Maybe affected items need to be
> test-check_itemscale.R: reverse-coded, e.g. using `datawizard::reverse()`.
> test-check_itemscale.R: Some of the values are negative. Maybe affected items need to be
> test-check_itemscale.R: reverse-coded, e.g. using `datawizard::reverse()`.
> test-check_itemscale.R: Some of the values are negative. Maybe affected items need to be
> test-check_itemscale.R: reverse-coded, e.g. using `datawizard::reverse()`.
> test-check_itemscale.R: Some of the values are negative. Maybe affected items need to be
> test-check_itemscale.R: reverse-coded, e.g. using `datawizard::reverse()`.
> test-check_itemscale.R: Some of the values are negative. Maybe affected items need to be
> test-check_itemscale.R: reverse-coded, e.g. using `datawizard::reverse()`.
> test-check_itemscale.R: Some of the values are negative. Maybe affected items need to be
> test-check_itemscale.R: reverse-coded, e.g. using `datawizard::reverse()`.
> test-check_collinearity.R: NOTE: 2 fixed-effect singletons were removed (2 observations).
Saving _problems/test-check_collinearity-157.R
Saving _problems/test-check_collinearity-185.R
> test-check_overdispersion.R: Overdispersion detected.
> test-check_overdispersion.R: Underdispersion detected.
> test-check_outliers.R: No outliers were detected (p = 0.238).
> test-glmmPQL.R: iteration 1
> test-item_discrimination.R: Some of the values are negative. Maybe affected items need to be
> test-item_discrimination.R: reverse-coded, e.g. using `datawizard::reverse()`.
> test-item_discrimination.R: Some of the values are negative. Maybe affected items need to be
> test-item_discrimination.R: reverse-coded, e.g. using `datawizard::reverse()`.
> test-item_discrimination.R: Some of the values are negative. Maybe affected items need to be
> test-item_discrimination.R: reverse-coded, e.g. using `datawizard::reverse()`.
> test-performance_aic.R: Model was not fitted with REML, however, `estimator = "REML"`. Set
> test-performance_aic.R: `estimator = "ML"` to obtain identical results as from `AIC()`.
[ FAIL 2 | WARN 2 | SKIP 41 | PASS 443 ]
══ Skipped tests (41) ══════════════════════════════════════════════════════════
• On CRAN (36): 'test-bootstrapped_icc_ci.R:2:3',
'test-bootstrapped_icc_ci.R:44:3', 'test-binned_residuals.R:163:3',
'test-binned_residuals.R:190:3', 'test-check_convergence.R:1:1',
'test-check_dag.R:1:1', 'test-check_distribution.R:1:1',
'test-check_itemscale.R:1:1', 'test-check_itemscale.R:100:1',
'test-check_model.R:1:1', 'test-check_collinearity.R:193:1',
'test-check_collinearity.R:226:1', 'test-check_residuals.R:2:3',
'test-check_singularity.R:2:3', 'test-check_singularity.R:30:3',
'test-check_zeroinflation.R:73:3', 'test-check_zeroinflation.R:112:3',
'test-check_outliers.R:115:3', 'test-check_outliers.R:339:3',
'test-helpers.R:1:1', 'test-item_omega.R:1:1', 'test-item_omega.R:31:3',
'test-compare_performance.R:1:1', 'test-mclogit.R:56:1',
'test-model_performance.bayesian.R:1:1',
'test-model_performance.lavaan.R:1:1', 'test-model_performance.merMod.R:2:3',
'test-model_performance.merMod.R:37:3', 'test-model_performance.psych.R:1:1',
'test-model_performance.rma.R:36:1', 'test-performance_reliability.R:23:3',
'test-pkg-ivreg.R:1:1', 'test-r2_bayes.R:39:3', 'test-r2_nagelkerke.R:35:3',
'test-test_likelihoodratio.R:55:1', 'test-rmse.R:39:3'
• On Mac (4): 'test-check_predictions.R:1:1', 'test-icc.R:1:1',
'test-nestedLogit.R:1:1', 'test-r2_nakagawa.R:1:1'
• getRversion() > "4.4.0" is TRUE (1): 'test-check_outliers.R:300:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-check_collinearity.R:157:3'): check_collinearity | afex ──────
Expected `expect_message(ccoW <- check_collinearity(aW))` to throw a warning.
── Failure ('test-check_collinearity.R:185:3'): check_collinearity | afex ──────
Expected `expect_message(ccoW <- check_collinearity(aW))` to throw a warning.
[ FAIL 2 | WARN 2 | SKIP 41 | PASS 443 ]
Error:
! Test failures.
Execution halted
Flavor: r-release-macos-arm64
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
Health stats visible at Monitor.