Last updated on 2026-04-13 05:53:25 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.4.6 | 31.11 | 561.36 | 592.47 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 1.4.6 | 19.41 | 353.33 | 372.74 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 1.4.6 | 57.00 | 872.29 | 929.29 | ERROR | |
| r-devel-linux-x86_64-fedora-gcc | 1.4.6 | 62.00 | 993.85 | 1055.85 | ERROR | |
| r-devel-macos-arm64 | 1.4.6 | 7.00 | 98.00 | 105.00 | OK | |
| r-devel-windows-x86_64 | 1.4.6 | 30.00 | 419.00 | 449.00 | ERROR | |
| r-patched-linux-x86_64 | 1.4.6 | 29.14 | 521.18 | 550.32 | OK | |
| r-release-linux-x86_64 | 1.4.6 | 26.60 | 521.27 | 547.87 | ERROR | |
| r-release-macos-arm64 | 1.4.6 | 7.00 | 137.00 | 144.00 | OK | |
| r-release-macos-x86_64 | 1.4.6 | 23.00 | 419.00 | 442.00 | OK | |
| r-release-windows-x86_64 | 1.4.6 | 29.00 | 0.00 | 29.00 | OK | |
| r-oldrel-macos-arm64 | 1.4.6 | 7.00 | 151.00 | 158.00 | OK | |
| r-oldrel-macos-x86_64 | 1.4.6 | 23.00 | 495.00 | 518.00 | OK | |
| r-oldrel-windows-x86_64 | 1.4.6 | 50.00 | 531.00 | 581.00 | ERROR |
Version: 1.4.6
Check: tests
Result: ERROR
Running ‘testthat.R’ [337s/169s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(insight)
> test_check("insight")
Starting 2 test processes.
Saving _problems/test-epiR-26.R
Saving _problems/test-epiR-30.R
> test-find_transformation.R: boundary (singular) fit: see help('isSingular')
> test-gamlss.R: GAMLSS-RS iteration 1: Global Deviance = 365.2328
> test-gamlss.R: GAMLSS-RS iteration 2: Global Deviance = 365.1292
> test-gamlss.R: GAMLSS-RS iteration 3: Global Deviance = 365.1269
> test-gamlss.R: GAMLSS-RS iteration 4: Global Deviance = 365.1268
> test-gamlss.R: GAMLSS-RS iteration 1: Global Deviance = 5779.746
> test-gamlss.R: GAMLSS-RS iteration 2: Global Deviance = 5779.746
> test-gamlss.R: GAMLSS-RS iteration 1: Global Deviance = 703.1164
> test-gamlss.R: GAMLSS-RS iteration 2: Global Deviance = 703.1164
> test-get_model.R: Loading required namespace: GPArotation
> test-get_random.R: boundary (singular) fit: see help('isSingular')
> test-glmmPQL.R: iteration 1
> test-is_converged.R: boundary (singular) fit: see help('isSingular')
> test-mmrm.R: mmrm() registered as emmeans extension
> test-mmrm.R: mmrm() registered as car::Anova extension
> test-model_info.R: boundary (singular) fit: see help('isSingular')
> test-nestedLogit.R: list(work = c(0L, 0L, 0L, 0L, 0L, 0L, 0L, 1L, 0L, 0L, 0L, 1L,
> test-nestedLogit.R: 0L, 0L, 0L, 0L, 1L, 1L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L,
> test-nestedLogit.R: 0L, 1L, 1L, 1L, 0L, 1L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 1L, 1L, 1L,
> test-nestedLogit.R: 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 1L, 1L, 1L, 1L, 1L, 1L,
> test-nestedLogit.R: 1L, 1L, 0L, 0L, 0L, 1L, 1L, 1L, 0L, 0L, 0L, 1L, 1L, 0L, 0L, 1L,
> test-nestedLogit.R: 1L, 1L, 1L, 1L, 1L, 0L, 1L, 1L, 1L, 1L, 1L, 0L, 0L, 0L, 0L, 0L,
> test-nestedLogit.R: 1L, 1L, 0L, 0L, 1L, 0L, 0L, 1L, 1L, 1L, 0L, 1L, 1L, 1L, 0L, 0L
> test-nestedLogit.R: ), full = c(1L, 1L, 0L, 1L, 1L, 0L, 0L, 0L, 1L, 1L, 0L, 0L, 0L,
> test-nestedLogit.R: 1L, 0L, 1L, 1L, 0L, 1L, 0L, 0L, 0L, 1L, 1L, 0L, 1L, 1L, 0L, 0L,
> test-nestedLogit.R: 0L, 1L, 1L, 1L, 1L, 0L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L))
> test-polr.R:
> test-polr.R: Re-fitting to get Hessian
> test-polr.R:
> test-polr.R:
> test-polr.R: Re-fitting to get Hessian
> test-polr.R:
> test-survey_coxph.R: Stratified Independent Sampling design (with replacement)
> test-survey_coxph.R: dpbc <- survey::svydesign(
> test-survey_coxph.R: id = ~1,
> test-survey_coxph.R: prob = ~randprob,
> test-survey_coxph.R: strata = ~edema,
> test-survey_coxph.R: data = subset(pbc, randomized)
> test-survey_coxph.R: )
> test-survey_coxph.R: Stratified Independent Sampling design (with replacement)
> test-survey_coxph.R: dpbc <- survey::svydesign(
> test-survey_coxph.R: id = ~1,
> test-survey_coxph.R: prob = ~randprob,
> test-survey_coxph.R: strata = ~edema,
> test-survey_coxph.R: data = subset(pbc, randomized)
> test-survey_coxph.R: )
> test-survey_coxph.R: Stratified Independent Sampling design (with replacement)
> test-survey_coxph.R: dpbc <- survey::svydesign(
> test-survey_coxph.R: id = ~1,
> test-survey_coxph.R: prob = ~randprob,
> test-survey_coxph.R: strata = ~edema,
> test-survey_coxph.R: data = subset(pbc, randomized)
> test-survey_coxph.R: )
[ FAIL 2 | WARN 0 | SKIP 97 | PASS 3486 ]
══ Skipped tests (97) ══════════════════════════════════════════════════════════
• On CRAN (89): 'test-GLMMadaptive.R:2:1', 'test-averaging.R:1:1',
'test-bias_correction.R:1:1', 'test-betareg.R:197:5', 'test-blmer.R:262:3',
'test-brms.R:1:1', 'test-brms_aterms.R:1:1',
'test-brms_gr_random_effects.R:1:1', 'test-brms_missing.R:1:1',
'test-brms_mm.R:1:1', 'test-brms_von_mises.R:1:1',
'test-clean_names.R:109:3', 'test-clean_parameters.R:1:1',
'test-coxme.R:1:1', 'test-clmm.R:170:3', 'test-cpglmm.R:152:3',
'test-export_table.R:6:3', 'test-export_table.R:18:3',
'test-export_table.R:152:3', 'test-export_table.R:273:3',
'test-export_table.R:327:1', 'test-export_table.R:814:3',
'test-export_table.R:858:3', 'test-export_table.R:918:1',
'test-export_table.R:939:3', 'test-export_table.R:1003:3',
'test-find_random.R:43:3', 'test-fixest.R:2:1', 'test-format_table.R:2:1',
'test-format_table_ci.R:73:3', 'test-gam.R:2:1', 'test-find_smooth.R:39:3',
'test-get_data.R:507:1', 'test-get_loglikelihood.R:143:3',
'test-get_loglikelihood.R:223:3', 'test-get_loglikelihood.R:320:3',
'test-get_predicted.R:2:1', 'test-get_priors.R:1:1',
'test-get_residuals.R:68:3', 'test-get_residuals.R:97:3',
'test-get_varcov.R:43:3', 'test-get_varcov.R:57:3',
'test-get_datagrid.R:1092:3', 'test-get_datagrid.R:1129:5',
'test-is_converged.R:47:1', 'test-iv_robust.R:120:3', 'test-lavaan.R:1:1',
'test-lcmm.R:1:1', 'test-lme.R:28:3', 'test-lme.R:212:3',
'test-glmmTMB.R:67:3', 'test-glmmTMB.R:767:3', 'test-glmmTMB.R:803:3',
'test-glmmTMB.R:1142:3', 'test-marginaleffects.R:1:1', 'test-mgcv.R:1:1',
'test-mipo.R:1:1', 'test-mlogit.R:1:1', 'test-model_info.R:106:3',
'test-modelbased.R:1:1', 'test-mvrstanarm.R:1:1', 'test-null_model.R:85:3',
'test-panelr-asym.R:165:3', 'test-panelr.R:301:3', 'test-phylolm.R:1:1',
'test-print_parameters.R:1:1', 'test-r2_nakagawa_bernoulli.R:1:1',
'test-r2_nakagawa_beta.R:1:1', 'test-r2_nakagawa_binomial.R:1:1',
'test-r2_nakagawa_gamma.R:1:1', 'test-r2_nakagawa_linear.R:1:1',
'test-r2_nakagawa_negbin.R:1:1', 'test-r2_nakagawa_negbin_zi.R:1:1',
'test-r2_nakagawa_ordered_beta.R:1:1', 'test-r2_nakagawa_poisson.R:1:1',
'test-r2_nakagawa_poisson_zi.R:1:1',
'test-r2_nakagawa_truncated_poisson.R:1:1', 'test-r2_nakagawa_tweedie.R:1:1',
'test-rlmer.R:276:3', 'test-rms.R:1:1', 'test-rqss.R:1:1',
'test-rstanarm.R:1:1', 'test-sdmTMB.R:1:1', 'test-selection.R:2:1',
'test-spatial.R:2:1', 'test-svylme.R:1:1', 'test-tidymodels.R:1:1',
'test-vgam.R:2:1', 'test-weightit.R:1:1'
• On Linux (3): 'test-BayesFactorBF.R:1:1', 'test-MCMCglmm.R:1:1',
'test-get_data.R:161:3'
• Package `logistf` is loaded and breaks `mmrm::mmrm()` (1): 'test-mmrm.R:4:1'
• TRUE is TRUE (1): 'test-feis.R:3:1'
• works interactively (2): 'test-coxph-panel.R:34:3', 'test-coxph.R:38:3'
• {bigglm} is not installed (1): 'test-model_info.R:24:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-epiR.R:22:3'): get_parameters ────────────────────────────────
Expected `params$Estimate` to equal `c(4.00754, 4.02561, 0.44835, 0.75047, 0.17642, 0.54201)`.
Differences:
actual | expected
[1] 4.00753676470588 - 4.00754 [1]
[2] 4.02561257512714 - 4.02561 [2]
[3] 0.448350740117156 - 0.44835 [3]
[4] 0.750470161919178 - 0.75047 [4]
[5] 0.176421557051525 - 0.17642 [5]
[6] 0.54200622805274 - 0.54201 [6]
[7] 7.47925307739092 -
── Failure ('test-epiR.R:27:3'): get_parameters ────────────────────────────────
Expected `params$Parameter` to equal `c("RR", "OR", "ARisk", "AFRisk", "PARisk", "PAFRisk")`.
Differences:
`actual[4:7]`: "AFRisk" "PARisk" "PAFRisk" "E"
`expected[4:6]`: "AFRisk" "PARisk" "PAFRisk"
[ FAIL 2 | WARN 0 | SKIP 97 | PASS 3486 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 1.4.6
Check: tests
Result: ERROR
Running ‘testthat.R’ [205s/102s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(insight)
> test_check("insight")
Starting 2 test processes.
Saving _problems/test-epiR-26.R
Saving _problems/test-epiR-30.R
> test-find_transformation.R: boundary (singular) fit: see help('isSingular')
> test-gamlss.R: GAMLSS-RS iteration 1: Global Deviance = 365.2328
> test-gamlss.R: GAMLSS-RS iteration 2: Global Deviance = 365.1292
> test-gamlss.R: GAMLSS-RS iteration 3: Global Deviance = 365.1269
> test-gamlss.R: GAMLSS-RS iteration 4: Global Deviance = 365.1268
> test-gamlss.R: GAMLSS-RS iteration 1: Global Deviance = 5779.746
> test-gamlss.R: GAMLSS-RS iteration 2: Global Deviance = 5779.746
> test-gamlss.R: GAMLSS-RS iteration 1: Global Deviance = 703.1164
> test-gamlss.R: GAMLSS-RS iteration 2: Global Deviance = 703.1164
> test-get_model.R: Loading required namespace: GPArotation
> test-get_random.R: boundary (singular) fit: see help('isSingular')
> test-glmmPQL.R: iteration 1
> test-is_converged.R: boundary (singular) fit: see help('isSingular')
> test-mmrm.R: mmrm() registered as emmeans extension
> test-mmrm.R: mmrm() registered as car::Anova extension
> test-model_info.R: boundary (singular) fit: see help('isSingular')
> test-nestedLogit.R: list(work = c(0L, 0L, 0L, 0L, 0L, 0L, 0L, 1L, 0L, 0L, 0L, 1L,
> test-nestedLogit.R: 0L, 0L, 0L, 0L, 1L, 1L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L,
> test-nestedLogit.R: 0L, 1L, 1L, 1L, 0L, 1L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 1L, 1L, 1L,
> test-nestedLogit.R: 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 1L, 1L, 1L, 1L, 1L, 1L,
> test-nestedLogit.R: 1L, 1L, 0L, 0L, 0L, 1L, 1L, 1L, 0L, 0L, 0L, 1L, 1L, 0L, 0L, 1L,
> test-nestedLogit.R: 1L, 1L, 1L, 1L, 1L, 0L, 1L, 1L, 1L, 1L, 1L, 0L, 0L, 0L, 0L, 0L,
> test-nestedLogit.R: 1L, 1L, 0L, 0L, 1L, 0L, 0L, 1L, 1L, 1L, 0L, 1L, 1L, 1L, 0L, 0L
> test-nestedLogit.R: ), full = c(1L, 1L, 0L, 1L, 1L, 0L, 0L, 0L, 1L, 1L, 0L, 0L, 0L,
> test-nestedLogit.R: 1L, 0L, 1L, 1L, 0L, 1L, 0L, 0L, 0L, 1L, 1L, 0L, 1L, 1L, 0L, 0L,
> test-nestedLogit.R: 0L, 1L, 1L, 1L, 1L, 0L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L))
> test-polr.R:
> test-polr.R: Re-fitting to get Hessian
> test-polr.R:
> test-polr.R:
> test-polr.R: Re-fitting to get Hessian
> test-polr.R:
> test-survey_coxph.R: Stratified Independent Sampling design (with replacement)
> test-survey_coxph.R: dpbc <- survey::svydesign(
> test-survey_coxph.R: id = ~1,
> test-survey_coxph.R: prob = ~randprob,
> test-survey_coxph.R: strata = ~edema,
> test-survey_coxph.R: data = subset(pbc, randomized)
> test-survey_coxph.R: )
> test-survey_coxph.R: Stratified Independent Sampling design (with replacement)
> test-survey_coxph.R: dpbc <- survey::svydesign(
> test-survey_coxph.R: id = ~1,
> test-survey_coxph.R: prob = ~randprob,
> test-survey_coxph.R: strata = ~edema,
> test-survey_coxph.R: data = subset(pbc, randomized)
> test-survey_coxph.R: )
> test-survey_coxph.R: Stratified Independent Sampling design (with replacement)
> test-survey_coxph.R: dpbc <- survey::svydesign(
> test-survey_coxph.R: id = ~1,
> test-survey_coxph.R: prob = ~randprob,
> test-survey_coxph.R: strata = ~edema,
> test-survey_coxph.R: data = subset(pbc, randomized)
> test-survey_coxph.R: )
[ FAIL 2 | WARN 0 | SKIP 97 | PASS 3486 ]
══ Skipped tests (97) ══════════════════════════════════════════════════════════
• On CRAN (89): 'test-GLMMadaptive.R:2:1', 'test-averaging.R:1:1',
'test-bias_correction.R:1:1', 'test-betareg.R:197:5', 'test-brms.R:1:1',
'test-brms_aterms.R:1:1', 'test-brms_gr_random_effects.R:1:1',
'test-brms_missing.R:1:1', 'test-brms_mm.R:1:1', 'test-brms_von_mises.R:1:1',
'test-blmer.R:262:3', 'test-clean_names.R:109:3',
'test-clean_parameters.R:1:1', 'test-coxme.R:1:1', 'test-clmm.R:170:3',
'test-cpglmm.R:152:3', 'test-export_table.R:6:3', 'test-export_table.R:18:3',
'test-export_table.R:152:3', 'test-export_table.R:273:3',
'test-export_table.R:327:1', 'test-export_table.R:814:3',
'test-export_table.R:858:3', 'test-export_table.R:918:1',
'test-export_table.R:939:3', 'test-export_table.R:1003:3',
'test-find_smooth.R:39:3', 'test-fixest.R:2:1', 'test-format_table.R:2:1',
'test-format_table_ci.R:73:3', 'test-find_random.R:43:3', 'test-gam.R:2:1',
'test-get_data.R:507:1', 'test-get_loglikelihood.R:143:3',
'test-get_loglikelihood.R:223:3', 'test-get_loglikelihood.R:320:3',
'test-get_predicted.R:2:1', 'test-get_priors.R:1:1',
'test-get_residuals.R:68:3', 'test-get_residuals.R:97:3',
'test-get_varcov.R:43:3', 'test-get_varcov.R:57:3',
'test-get_datagrid.R:1092:3', 'test-get_datagrid.R:1129:5',
'test-is_converged.R:47:1', 'test-iv_robust.R:120:3', 'test-lavaan.R:1:1',
'test-lcmm.R:1:1', 'test-lme.R:28:3', 'test-lme.R:212:3',
'test-glmmTMB.R:67:3', 'test-glmmTMB.R:767:3', 'test-glmmTMB.R:803:3',
'test-glmmTMB.R:1142:3', 'test-marginaleffects.R:1:1', 'test-mgcv.R:1:1',
'test-mipo.R:1:1', 'test-mlogit.R:1:1', 'test-model_info.R:106:3',
'test-modelbased.R:1:1', 'test-mvrstanarm.R:1:1', 'test-null_model.R:85:3',
'test-panelr-asym.R:165:3', 'test-panelr.R:301:3', 'test-phylolm.R:1:1',
'test-print_parameters.R:1:1', 'test-r2_nakagawa_bernoulli.R:1:1',
'test-r2_nakagawa_beta.R:1:1', 'test-r2_nakagawa_binomial.R:1:1',
'test-r2_nakagawa_gamma.R:1:1', 'test-r2_nakagawa_linear.R:1:1',
'test-r2_nakagawa_negbin.R:1:1', 'test-r2_nakagawa_negbin_zi.R:1:1',
'test-r2_nakagawa_ordered_beta.R:1:1', 'test-r2_nakagawa_poisson.R:1:1',
'test-r2_nakagawa_poisson_zi.R:1:1',
'test-r2_nakagawa_truncated_poisson.R:1:1', 'test-r2_nakagawa_tweedie.R:1:1',
'test-rlmer.R:276:3', 'test-rms.R:1:1', 'test-rqss.R:1:1',
'test-rstanarm.R:1:1', 'test-sdmTMB.R:1:1', 'test-selection.R:2:1',
'test-spatial.R:2:1', 'test-svylme.R:1:1', 'test-tidymodels.R:1:1',
'test-vgam.R:2:1', 'test-weightit.R:1:1'
• On Linux (3): 'test-BayesFactorBF.R:1:1', 'test-MCMCglmm.R:1:1',
'test-get_data.R:161:3'
• Package `logistf` is loaded and breaks `mmrm::mmrm()` (1): 'test-mmrm.R:4:1'
• TRUE is TRUE (1): 'test-feis.R:3:1'
• works interactively (2): 'test-coxph-panel.R:34:3', 'test-coxph.R:38:3'
• {bigglm} is not installed (1): 'test-model_info.R:24:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-epiR.R:22:3'): get_parameters ────────────────────────────────
Expected `params$Estimate` to equal `c(4.00754, 4.02561, 0.44835, 0.75047, 0.17642, 0.54201)`.
Differences:
actual | expected
[1] 4.00753676470588 - 4.00754 [1]
[2] 4.02561257512714 - 4.02561 [2]
[3] 0.448350740117156 - 0.44835 [3]
[4] 0.750470161919178 - 0.75047 [4]
[5] 0.176421557051525 - 0.17642 [5]
[6] 0.54200622805274 - 0.54201 [6]
[7] 7.47925307739092 -
── Failure ('test-epiR.R:27:3'): get_parameters ────────────────────────────────
Expected `params$Parameter` to equal `c("RR", "OR", "ARisk", "AFRisk", "PARisk", "PAFRisk")`.
Differences:
`actual[4:7]`: "AFRisk" "PARisk" "PAFRisk" "E"
`expected[4:6]`: "AFRisk" "PARisk" "PAFRisk"
[ FAIL 2 | WARN 0 | SKIP 97 | PASS 3486 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.4.6
Check: tests
Result: ERROR
Running ‘testthat.R’ [528s/365s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(insight)
> test_check("insight")
Starting 2 test processes.
Saving _problems/test-epiR-26.R
Saving _problems/test-epiR-30.R
> test-find_transformation.R: boundary (singular) fit: see help('isSingular')
> test-gamlss.R: GAMLSS-RS iteration 1: Global Deviance = 365.2328
> test-gamlss.R: GAMLSS-RS iteration 2: Global Deviance = 365.1292
> test-gamlss.R: GAMLSS-RS iteration 3: Global Deviance = 365.1269
> test-gamlss.R: GAMLSS-RS iteration 4: Global Deviance = 365.1268
> test-gamlss.R: GAMLSS-RS iteration 1: Global Deviance = 5779.746
> test-gamlss.R: GAMLSS-RS iteration 2: Global Deviance = 5779.746
> test-gamlss.R: GAMLSS-RS iteration 1: Global Deviance = 703.1164
> test-gamlss.R: GAMLSS-RS iteration 2: Global Deviance = 703.1164
> test-get_model.R: Loading required namespace: GPArotation
> test-get_random.R: boundary (singular) fit: see help('isSingular')
> test-glmmPQL.R: iteration 1
> test-is_converged.R: boundary (singular) fit: see help('isSingular')
> test-mmrm.R: mmrm() registered as emmeans extension
> test-mmrm.R: mmrm() registered as car::Anova extension
> test-model_info.R: boundary (singular) fit: see help('isSingular')
> test-nestedLogit.R: list(work = c(0L, 0L, 0L, 0L, 0L, 0L, 0L, 1L, 0L, 0L, 0L, 1L,
> test-nestedLogit.R: 0L, 0L, 0L, 0L, 1L, 1L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L,
> test-nestedLogit.R: 0L, 1L, 1L, 1L, 0L, 1L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 1L, 1L, 1L,
> test-nestedLogit.R: 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 1L, 1L, 1L, 1L, 1L, 1L,
> test-nestedLogit.R: 1L, 1L, 0L, 0L, 0L, 1L, 1L, 1L, 0L, 0L, 0L, 1L, 1L, 0L, 0L, 1L,
> test-nestedLogit.R: 1L, 1L, 1L, 1L, 1L, 0L, 1L, 1L, 1L, 1L, 1L, 0L, 0L, 0L, 0L, 0L,
> test-nestedLogit.R: 1L, 1L, 0L, 0L, 1L, 0L, 0L, 1L, 1L, 1L, 0L, 1L, 1L, 1L, 0L, 0L
> test-nestedLogit.R: ), full = c(1L, 1L, 0L, 1L, 1L, 0L, 0L, 0L, 1L, 1L, 0L, 0L, 0L,
> test-nestedLogit.R: 1L, 0L, 1L, 1L, 0L, 1L, 0L, 0L, 0L, 1L, 1L, 0L, 1L, 1L, 0L, 0L,
> test-nestedLogit.R: 0L, 1L, 1L, 1L, 1L, 0L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L))
> test-polr.R:
> test-polr.R: Re-fitting to get Hessian
> test-polr.R:
> test-polr.R:
> test-polr.R: Re-fitting to get Hessian
> test-polr.R:
> test-survey_coxph.R: Stratified Independent Sampling design (with replacement)
> test-survey_coxph.R: dpbc <- survey::svydesign(
> test-survey_coxph.R: id = ~1,
> test-survey_coxph.R: prob = ~randprob,
> test-survey_coxph.R: strata = ~edema,
> test-survey_coxph.R: data = subset(pbc, randomized)
> test-survey_coxph.R: )
> test-survey_coxph.R: Stratified Independent Sampling design (with replacement)
> test-survey_coxph.R: dpbc <- survey::svydesign(
> test-survey_coxph.R: id = ~1,
> test-survey_coxph.R: prob = ~randprob,
> test-survey_coxph.R: strata = ~edema,
> test-survey_coxph.R: data = subset(pbc, randomized)
> test-survey_coxph.R: )
> test-survey_coxph.R: Stratified Independent Sampling design (with replacement)
> test-survey_coxph.R: dpbc <- survey::svydesign(
> test-survey_coxph.R: id = ~1,
> test-survey_coxph.R: prob = ~randprob,
> test-survey_coxph.R: strata = ~edema,
> test-survey_coxph.R: data = subset(pbc, randomized)
> test-survey_coxph.R: )
[ FAIL 2 | WARN 0 | SKIP 97 | PASS 3486 ]
══ Skipped tests (97) ══════════════════════════════════════════════════════════
• On CRAN (89): 'test-GLMMadaptive.R:2:1', 'test-averaging.R:1:1',
'test-bias_correction.R:1:1', 'test-blmer.R:262:3', 'test-brms.R:1:1',
'test-brms_aterms.R:1:1', 'test-brms_gr_random_effects.R:1:1',
'test-brms_missing.R:1:1', 'test-brms_mm.R:1:1', 'test-brms_von_mises.R:1:1',
'test-betareg.R:197:5', 'test-clean_names.R:109:3',
'test-clean_parameters.R:1:1', 'test-coxme.R:1:1', 'test-cpglmm.R:152:3',
'test-clmm.R:170:3', 'test-export_table.R:6:3', 'test-export_table.R:18:3',
'test-export_table.R:152:3', 'test-export_table.R:273:3',
'test-export_table.R:327:1', 'test-export_table.R:814:3',
'test-export_table.R:858:3', 'test-export_table.R:918:1',
'test-export_table.R:939:3', 'test-export_table.R:1003:3',
'test-find_random.R:43:3', 'test-fixest.R:2:1', 'test-format_table.R:2:1',
'test-format_table_ci.R:73:3', 'test-gam.R:2:1', 'test-find_smooth.R:39:3',
'test-get_data.R:507:1', 'test-get_loglikelihood.R:143:3',
'test-get_loglikelihood.R:223:3', 'test-get_loglikelihood.R:320:3',
'test-get_predicted.R:2:1', 'test-get_priors.R:1:1',
'test-get_residuals.R:68:3', 'test-get_residuals.R:97:3',
'test-get_datagrid.R:1092:3', 'test-get_datagrid.R:1129:5',
'test-get_varcov.R:43:3', 'test-get_varcov.R:57:3',
'test-is_converged.R:47:1', 'test-iv_robust.R:120:3', 'test-lavaan.R:1:1',
'test-lcmm.R:1:1', 'test-glmmTMB.R:67:3', 'test-glmmTMB.R:767:3',
'test-glmmTMB.R:803:3', 'test-glmmTMB.R:1142:3', 'test-lme.R:28:3',
'test-lme.R:212:3', 'test-marginaleffects.R:1:1', 'test-mgcv.R:1:1',
'test-mipo.R:1:1', 'test-mlogit.R:1:1', 'test-model_info.R:106:3',
'test-modelbased.R:1:1', 'test-mvrstanarm.R:1:1', 'test-null_model.R:85:3',
'test-panelr-asym.R:165:3', 'test-panelr.R:301:3', 'test-phylolm.R:1:1',
'test-print_parameters.R:1:1', 'test-r2_nakagawa_bernoulli.R:1:1',
'test-r2_nakagawa_beta.R:1:1', 'test-r2_nakagawa_binomial.R:1:1',
'test-r2_nakagawa_gamma.R:1:1', 'test-r2_nakagawa_linear.R:1:1',
'test-r2_nakagawa_negbin.R:1:1', 'test-r2_nakagawa_negbin_zi.R:1:1',
'test-r2_nakagawa_ordered_beta.R:1:1', 'test-r2_nakagawa_poisson.R:1:1',
'test-r2_nakagawa_poisson_zi.R:1:1',
'test-r2_nakagawa_truncated_poisson.R:1:1', 'test-r2_nakagawa_tweedie.R:1:1',
'test-rlmer.R:276:3', 'test-rms.R:1:1', 'test-rqss.R:1:1',
'test-rstanarm.R:1:1', 'test-sdmTMB.R:1:1', 'test-selection.R:2:1',
'test-spatial.R:2:1', 'test-svylme.R:1:1', 'test-tidymodels.R:1:1',
'test-vgam.R:2:1', 'test-weightit.R:1:1'
• On Linux (3): 'test-BayesFactorBF.R:1:1', 'test-MCMCglmm.R:1:1',
'test-get_data.R:161:3'
• Package `logistf` is loaded and breaks `mmrm::mmrm()` (1): 'test-mmrm.R:4:1'
• TRUE is TRUE (1): 'test-feis.R:3:1'
• works interactively (2): 'test-coxph-panel.R:34:3', 'test-coxph.R:38:3'
• {bigglm} is not installed (1): 'test-model_info.R:24:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-epiR.R:22:3'): get_parameters ────────────────────────────────
Expected `params$Estimate` to equal `c(4.00754, 4.02561, 0.44835, 0.75047, 0.17642, 0.54201)`.
Differences:
actual | expected
[1] 4.00753676470588 - 4.00754 [1]
[2] 4.02561257512714 - 4.02561 [2]
[3] 0.448350740117156 - 0.44835 [3]
[4] 0.750470161919178 - 0.75047 [4]
[5] 0.176421557051525 - 0.17642 [5]
[6] 0.54200622805274 - 0.54201 [6]
[7] 7.47925307739092 -
── Failure ('test-epiR.R:27:3'): get_parameters ────────────────────────────────
Expected `params$Parameter` to equal `c("RR", "OR", "ARisk", "AFRisk", "PARisk", "PAFRisk")`.
Differences:
`actual[4:7]`: "AFRisk" "PARisk" "PAFRisk" "E"
`expected[4:6]`: "AFRisk" "PARisk" "PAFRisk"
[ FAIL 2 | WARN 0 | SKIP 97 | PASS 3486 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 1.4.6
Check: tests
Result: ERROR
Running ‘testthat.R’ [10m/14m]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(insight)
> test_check("insight")
Starting 2 test processes.
Saving _problems/test-epiR-26.R
Saving _problems/test-epiR-30.R
> test-find_transformation.R: boundary (singular) fit: see help('isSingular')
> test-gamlss.R: GAMLSS-RS iteration 1: Global Deviance = 365.2328
> test-gamlss.R: GAMLSS-RS iteration
> test-gamlss.R: 2: Global Deviance = 365.1292
> test-gamlss.R: GAMLSS-RS iteration 3: Global Deviance = 365.1269
> test-gamlss.R: GAMLSS-RS iteration 4: Global Deviance = 365.1268
> test-gamlss.R: GAMLSS-RS iteration 1: Global Deviance = 5779.746
> test-gamlss.R: GAMLSS-RS iteration
> test-gamlss.R: 2: Global Deviance = 5779.746
> test-gamlss.R: GAMLSS-RS iteration
> test-gamlss.R: 1: Global Deviance = 703.1164
> test-gamlss.R: GAMLSS-RS iteration 2: Global Deviance = 703.1164
> test-get_model.R: Loading required namespace: GPArotation
> test-get_random.R: boundary (singular) fit: see help('isSingular')
> test-glmmPQL.R: iteration 1
> test-is_converged.R: boundary (singular) fit: see help('isSingular')
> test-mmrm.R: mmrm() registered as emmeans extension
> test-mmrm.R: mmrm() registered as car::Anova extension
> test-model_info.R: boundary (singular) fit: see help('isSingular')
> test-nestedLogit.R: list(work = c(0L, 0L, 0L, 0L, 0L, 0L, 0L, 1L, 0L, 0L, 0L, 1L,
> test-nestedLogit.R: 0L, 0L, 0L, 0L, 1L, 1L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L,
> test-nestedLogit.R: 0L, 1L, 1L, 1L, 0L, 1L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 1L, 1L, 1L,
> test-nestedLogit.R: 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 1L, 1L, 1L, 1L, 1L, 1L,
> test-nestedLogit.R: 1L, 1L, 0L, 0L, 0L, 1L, 1L, 1L, 0L, 0L, 0L, 1L, 1L, 0L, 0L, 1L,
> test-nestedLogit.R: 1L, 1L, 1L, 1L, 1L, 0L, 1L, 1L, 1L, 1L, 1L, 0L, 0L, 0L, 0L, 0L,
> test-nestedLogit.R: 1L, 1L, 0L, 0L, 1L, 0L, 0L, 1L, 1L, 1L, 0L, 1L, 1L, 1L, 0L, 0L
> test-nestedLogit.R: ), full = c(1L, 1L, 0L, 1L, 1L, 0L, 0L, 0L, 1L, 1L, 0L, 0L, 0L,
> test-nestedLogit.R: 1L, 0L, 1L, 1L, 0L, 1L, 0L, 0L, 0L, 1L, 1L, 0L, 1L, 1L, 0L, 0L,
> test-nestedLogit.R: 0L, 1L, 1L, 1L, 1L, 0L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L))
> test-polr.R:
> test-polr.R: Re-fitting to get Hessian
> test-polr.R:
> test-polr.R:
> test-polr.R: Re-fitting to get Hessian
> test-polr.R:
> test-survey_coxph.R: Stratified Independent Sampling design (with replacement)
> test-survey_coxph.R: dpbc <- survey::svydesign(
> test-survey_coxph.R: id = ~1,
> test-survey_coxph.R: prob = ~randprob,
> test-survey_coxph.R: strata = ~edema,
> test-survey_coxph.R: data = subset(pbc, randomized)
> test-survey_coxph.R: )
> test-survey_coxph.R: Stratified Independent Sampling design (with replacement)
> test-survey_coxph.R: dpbc <- survey::svydesign(
> test-survey_coxph.R: id = ~1,
> test-survey_coxph.R: prob = ~randprob,
> test-survey_coxph.R: strata = ~edema,
> test-survey_coxph.R: data = subset(pbc, randomized)
> test-survey_coxph.R: )
> test-survey_coxph.R: Stratified Independent Sampling design (with replacement)
> test-survey_coxph.R: dpbc <- survey::svydesign(
> test-survey_coxph.R: id = ~1,
> test-survey_coxph.R: prob = ~randprob,
> test-survey_coxph.R: strata = ~edema,
> test-survey_coxph.R: data = subset(pbc, randomized)
> test-survey_coxph.R: )
[ FAIL 2 | WARN 0 | SKIP 97 | PASS 3486 ]
══ Skipped tests (97) ══════════════════════════════════════════════════════════
• On CRAN (89): 'test-GLMMadaptive.R:2:1', 'test-averaging.R:1:1',
'test-bias_correction.R:1:1', 'test-blmer.R:262:3', 'test-brms.R:1:1',
'test-brms_aterms.R:1:1', 'test-betareg.R:197:5',
'test-brms_gr_random_effects.R:1:1', 'test-brms_missing.R:1:1',
'test-brms_mm.R:1:1', 'test-brms_von_mises.R:1:1',
'test-clean_names.R:109:3', 'test-clean_parameters.R:1:1',
'test-coxme.R:1:1', 'test-cpglmm.R:152:3', 'test-clmm.R:170:3',
'test-export_table.R:6:3', 'test-export_table.R:18:3',
'test-export_table.R:152:3', 'test-export_table.R:273:3',
'test-export_table.R:327:1', 'test-export_table.R:814:3',
'test-export_table.R:858:3', 'test-export_table.R:918:1',
'test-export_table.R:939:3', 'test-export_table.R:1003:3',
'test-find_smooth.R:39:3', 'test-fixest.R:2:1', 'test-format_table.R:2:1',
'test-format_table_ci.R:73:3', 'test-gam.R:2:1', 'test-find_random.R:43:3',
'test-get_data.R:507:1', 'test-get_loglikelihood.R:143:3',
'test-get_loglikelihood.R:223:3', 'test-get_loglikelihood.R:320:3',
'test-get_predicted.R:2:1', 'test-get_priors.R:1:1',
'test-get_residuals.R:68:3', 'test-get_residuals.R:97:3',
'test-get_varcov.R:43:3', 'test-get_varcov.R:57:3',
'test-get_datagrid.R:1092:3', 'test-get_datagrid.R:1129:5',
'test-is_converged.R:47:1', 'test-iv_robust.R:120:3', 'test-lavaan.R:1:1',
'test-lcmm.R:1:1', 'test-lme.R:28:3', 'test-lme.R:212:3',
'test-glmmTMB.R:67:3', 'test-glmmTMB.R:767:3', 'test-glmmTMB.R:803:3',
'test-glmmTMB.R:1142:3', 'test-marginaleffects.R:1:1', 'test-mgcv.R:1:1',
'test-mipo.R:1:1', 'test-mlogit.R:1:1', 'test-model_info.R:106:3',
'test-modelbased.R:1:1', 'test-mvrstanarm.R:1:1', 'test-null_model.R:85:3',
'test-panelr-asym.R:165:3', 'test-panelr.R:301:3', 'test-phylolm.R:1:1',
'test-print_parameters.R:1:1', 'test-r2_nakagawa_bernoulli.R:1:1',
'test-r2_nakagawa_beta.R:1:1', 'test-r2_nakagawa_binomial.R:1:1',
'test-r2_nakagawa_gamma.R:1:1', 'test-r2_nakagawa_linear.R:1:1',
'test-r2_nakagawa_negbin.R:1:1', 'test-r2_nakagawa_negbin_zi.R:1:1',
'test-r2_nakagawa_ordered_beta.R:1:1', 'test-r2_nakagawa_poisson.R:1:1',
'test-r2_nakagawa_poisson_zi.R:1:1',
'test-r2_nakagawa_truncated_poisson.R:1:1', 'test-r2_nakagawa_tweedie.R:1:1',
'test-rlmer.R:276:3', 'test-rms.R:1:1', 'test-rqss.R:1:1',
'test-rstanarm.R:1:1', 'test-sdmTMB.R:1:1', 'test-selection.R:2:1',
'test-spatial.R:2:1', 'test-svylme.R:1:1', 'test-tidymodels.R:1:1',
'test-vgam.R:2:1', 'test-weightit.R:1:1'
• On Linux (3): 'test-BayesFactorBF.R:1:1', 'test-MCMCglmm.R:1:1',
'test-get_data.R:161:3'
• Package `logistf` is loaded and breaks `mmrm::mmrm()` (1): 'test-mmrm.R:4:1'
• TRUE is TRUE (1): 'test-feis.R:3:1'
• works interactively (2): 'test-coxph-panel.R:34:3', 'test-coxph.R:38:3'
• {bigglm} is not installed (1): 'test-model_info.R:24:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-epiR.R:22:3'): get_parameters ────────────────────────────────
Expected `params$Estimate` to equal `c(4.00754, 4.02561, 0.44835, 0.75047, 0.17642, 0.54201)`.
Differences:
actual | expected
[1] 4.00753676470588 - 4.00754 [1]
[2] 4.02561257512714 - 4.02561 [2]
[3] 0.448350740117156 - 0.44835 [3]
[4] 0.750470161919178 - 0.75047 [4]
[5] 0.176421557051525 - 0.17642 [5]
[6] 0.54200622805274 - 0.54201 [6]
[7] 7.47925307739092 -
── Failure ('test-epiR.R:27:3'): get_parameters ────────────────────────────────
Expected `params$Parameter` to equal `c("RR", "OR", "ARisk", "AFRisk", "PARisk", "PAFRisk")`.
Differences:
`actual[4:7]`: "AFRisk" "PARisk" "PAFRisk" "E"
`expected[4:6]`: "AFRisk" "PARisk" "PAFRisk"
[ FAIL 2 | WARN 0 | SKIP 97 | PASS 3486 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 1.4.6
Check: tests
Result: ERROR
Running 'testthat.R' [160s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> library(insight)
> test_check("insight")
Starting 2 test processes.
Saving _problems/test-epiR-26.R
Saving _problems/test-epiR-30.R
> test-find_transformation.R: boundary (singular) fit: see help('isSingular')
> test-gamlss.R: GAMLSS-RS iteration 1: Global Deviance = 365.2328
> test-gamlss.R: GAMLSS-RS iteration 2: Global Deviance = 365.1292
> test-gamlss.R: GAMLSS-RS iteration 3: Global Deviance = 365.1269
> test-gamlss.R: GAMLSS-RS iteration 4: Global Deviance = 365.1268
> test-gamlss.R: GAMLSS-RS iteration 1: Global Deviance = 5779.746
> test-gamlss.R: GAMLSS-RS iteration 2: Global Deviance = 5779.746
> test-gamlss.R: GAMLSS-RS iteration 1: Global Deviance = 703.1164
> test-gamlss.R: GAMLSS-RS iteration 2: Global Deviance = 703.1164
> test-get_model.R: Loading required namespace: GPArotation
> test-get_random.R: boundary (singular) fit: see help('isSingular')
> test-glmmPQL.R: iteration 1
> test-is_converged.R: boundary (singular) fit: see help('isSingular')
> test-mmrm.R: mmrm() registered as emmeans extension
> test-mmrm.R: mmrm() registered as car::Anova extension
> test-model_info.R: boundary (singular) fit: see help('isSingular')
> test-nestedLogit.R: list(work = c(0L, 0L, 0L, 0L, 0L, 0L, 0L, 1L, 0L, 0L, 0L, 1L,
> test-nestedLogit.R: 0L, 0L, 0L, 0L, 1L, 1L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L,
> test-nestedLogit.R: 0L, 1L, 1L, 1L, 0L, 1L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 1L, 1L, 1L,
> test-nestedLogit.R: 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 1L, 1L, 1L, 1L, 1L, 1L,
> test-nestedLogit.R: 1L, 1L, 0L, 0L, 0L, 1L, 1L, 1L, 0L, 0L, 0L, 1L, 1L, 0L, 0L, 1L,
> test-nestedLogit.R: 1L, 1L, 1L, 1L, 1L, 0L, 1L, 1L, 1L, 1L, 1L, 0L, 0L, 0L, 0L, 0L,
> test-nestedLogit.R: 1L, 1L, 0L, 0L, 1L, 0L, 0L, 1L, 1L, 1L, 0L, 1L, 1L, 1L, 0L, 0L
> test-nestedLogit.R: ), full = c(1L, 1L, 0L, 1L, 1L, 0L, 0L, 0L, 1L, 1L, 0L, 0L, 0L,
> test-nestedLogit.R: 1L, 0L, 1L, 1L, 0L, 1L, 0L, 0L, 0L, 1L, 1L, 0L, 1L, 1L, 0L, 0L,
> test-nestedLogit.R: 0L, 1L, 1L, 1L, 1L, 0L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L))
> test-polr.R:
> test-polr.R: Re-fitting to get Hessian
> test-polr.R:
> test-polr.R:
> test-polr.R: Re-fitting to get Hessian
> test-polr.R:
> test-survey_coxph.R: Stratified Independent Sampling design (with replacement)
> test-survey_coxph.R: dpbc <- survey::svydesign(
> test-survey_coxph.R: id = ~1,
> test-survey_coxph.R: prob = ~randprob,
> test-survey_coxph.R: strata = ~edema,
> test-survey_coxph.R: data = subset(pbc, randomized)
> test-survey_coxph.R: )
> test-survey_coxph.R: Stratified Independent Sampling design (with replacement)
> test-survey_coxph.R: dpbc <- survey::svydesign(
> test-survey_coxph.R: id = ~1,
> test-survey_coxph.R: prob = ~randprob,
> test-survey_coxph.R: strata = ~edema,
> test-survey_coxph.R: data = subset(pbc, randomized)
> test-survey_coxph.R: )
> test-survey_coxph.R: Stratified Independent Sampling design (with replacement)
> test-survey_coxph.R: dpbc <- survey::svydesign(
> test-survey_coxph.R: id = ~1,
> test-survey_coxph.R: prob = ~randprob,
> test-survey_coxph.R: strata = ~edema,
> test-survey_coxph.R: data = subset(pbc, randomized)
> test-survey_coxph.R: )
[ FAIL 2 | WARN 0 | SKIP 94 | PASS 3521 ]
══ Skipped tests (94) ══════════════════════════════════════════════════════════
• On CRAN (88): 'test-GLMMadaptive.R:2:1', 'test-averaging.R:1:1',
'test-bias_correction.R:1:1', 'test-betareg.R:197:5', 'test-blmer.R:262:3',
'test-brms.R:1:1', 'test-brms_aterms.R:1:1',
'test-brms_gr_random_effects.R:1:1', 'test-brms_missing.R:1:1',
'test-brms_mm.R:1:1', 'test-brms_von_mises.R:1:1',
'test-clean_names.R:109:3', 'test-clean_parameters.R:1:1',
'test-coxme.R:1:1', 'test-cpglmm.R:152:3', 'test-clmm.R:170:3',
'test-export_table.R:6:3', 'test-export_table.R:18:3',
'test-export_table.R:152:3', 'test-export_table.R:273:3',
'test-export_table.R:327:1', 'test-export_table.R:814:3',
'test-export_table.R:858:3', 'test-export_table.R:918:1',
'test-export_table.R:939:3', 'test-export_table.R:1003:3',
'test-find_random.R:43:3', 'test-fixest.R:2:1', 'test-find_smooth.R:39:3',
'test-format_table.R:2:1', 'test-format_table_ci.R:73:3', 'test-gam.R:2:1',
'test-get_data.R:507:1', 'test-get_loglikelihood.R:143:3',
'test-get_loglikelihood.R:223:3', 'test-get_loglikelihood.R:320:3',
'test-get_predicted.R:2:1', 'test-get_priors.R:1:1',
'test-get_residuals.R:68:3', 'test-get_residuals.R:97:3',
'test-get_varcov.R:43:3', 'test-get_varcov.R:57:3',
'test-get_datagrid.R:1092:3', 'test-get_datagrid.R:1129:5',
'test-is_converged.R:47:1', 'test-iv_robust.R:120:3', 'test-lavaan.R:1:1',
'test-lcmm.R:1:1', 'test-lme.R:28:3', 'test-lme.R:212:3',
'test-glmmTMB.R:67:3', 'test-glmmTMB.R:767:3', 'test-glmmTMB.R:803:3',
'test-glmmTMB.R:1142:3', 'test-marginaleffects.R:1:1', 'test-mgcv.R:1:1',
'test-mipo.R:1:1', 'test-mlogit.R:1:1', 'test-model_info.R:106:3',
'test-modelbased.R:1:1', 'test-mvrstanarm.R:1:1', 'test-null_model.R:85:3',
'test-panelr-asym.R:165:3', 'test-panelr.R:301:3', 'test-phylolm.R:1:1',
'test-print_parameters.R:1:1', 'test-r2_nakagawa_bernoulli.R:1:1',
'test-r2_nakagawa_beta.R:1:1', 'test-r2_nakagawa_binomial.R:1:1',
'test-r2_nakagawa_gamma.R:1:1', 'test-r2_nakagawa_linear.R:1:1',
'test-r2_nakagawa_negbin.R:1:1', 'test-r2_nakagawa_negbin_zi.R:1:1',
'test-r2_nakagawa_ordered_beta.R:1:1', 'test-r2_nakagawa_poisson.R:1:1',
'test-r2_nakagawa_poisson_zi.R:1:1',
'test-r2_nakagawa_truncated_poisson.R:1:1', 'test-r2_nakagawa_tweedie.R:1:1',
'test-rms.R:1:1', 'test-rqss.R:1:1', 'test-rstanarm.R:1:1',
'test-sdmTMB.R:1:1', 'test-selection.R:2:1', 'test-spatial.R:2:1',
'test-svylme.R:1:1', 'test-tidymodels.R:1:1', 'test-vgam.R:2:1',
'test-weightit.R:1:1'
• Package `logistf` is loaded and breaks `mmrm::mmrm()` (1): 'test-mmrm.R:4:1'
• TRUE is TRUE (1): 'test-feis.R:3:1'
• works interactively (2): 'test-coxph-panel.R:34:3', 'test-coxph.R:38:3'
• {bigglm} is not installed (1): 'test-model_info.R:24:3'
• {robustlmm} cannot be loaded (1): 'test-rlmer.R:1:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-epiR.R:22:3'): get_parameters ────────────────────────────────
Expected `params$Estimate` to equal `c(4.00754, 4.02561, 0.44835, 0.75047, 0.17642, 0.54201)`.
Differences:
actual | expected
[1] 4.00753676470588 - 4.00754 [1]
[2] 4.02561257512714 - 4.02561 [2]
[3] 0.448350740117156 - 0.44835 [3]
[4] 0.750470161919178 - 0.75047 [4]
[5] 0.176421557051525 - 0.17642 [5]
[6] 0.54200622805274 - 0.54201 [6]
[7] 7.47925307739092 -
── Failure ('test-epiR.R:27:3'): get_parameters ────────────────────────────────
Expected `params$Parameter` to equal `c("RR", "OR", "ARisk", "AFRisk", "PARisk", "PAFRisk")`.
Differences:
`actual[4:7]`: "AFRisk" "PARisk" "PAFRisk" "E"
`expected[4:6]`: "AFRisk" "PARisk" "PAFRisk"
[ FAIL 2 | WARN 0 | SKIP 94 | PASS 3521 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-windows-x86_64
Version: 1.4.6
Check: tests
Result: ERROR
Running ‘testthat.R’ [322s/169s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(insight)
> test_check("insight")
Starting 2 test processes.
Saving _problems/test-epiR-26.R
Saving _problems/test-epiR-30.R
> test-find_transformation.R: boundary (singular) fit: see help('isSingular')
> test-gamlss.R: GAMLSS-RS iteration 1: Global Deviance = 365.2328
> test-gamlss.R: GAMLSS-RS iteration 2: Global Deviance = 365.1292
> test-gamlss.R: GAMLSS-RS iteration 3: Global Deviance = 365.1269
> test-gamlss.R: GAMLSS-RS iteration 4: Global Deviance = 365.1268
> test-gamlss.R: GAMLSS-RS iteration 1: Global Deviance = 5779.746
> test-gamlss.R: GAMLSS-RS iteration 2: Global Deviance = 5779.746
> test-gamlss.R: GAMLSS-RS iteration 1: Global Deviance = 703.1164
> test-gamlss.R: GAMLSS-RS iteration 2: Global Deviance = 703.1164
> test-get_model.R: Loading required namespace: GPArotation
> test-get_random.R: boundary (singular) fit: see help('isSingular')
> test-glmmPQL.R: iteration 1
> test-is_converged.R: boundary (singular) fit: see help('isSingular')
> test-mmrm.R: mmrm() registered as emmeans extension
> test-mmrm.R: mmrm() registered as car::Anova extension
> test-model_info.R: boundary (singular) fit: see help('isSingular')
> test-nestedLogit.R: list(work = c(0L, 0L, 0L, 0L, 0L, 0L, 0L, 1L, 0L, 0L, 0L, 1L,
> test-nestedLogit.R: 0L, 0L, 0L, 0L, 1L, 1L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L,
> test-nestedLogit.R: 0L, 1L, 1L, 1L, 0L, 1L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 1L, 1L, 1L,
> test-nestedLogit.R: 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 1L, 1L, 1L, 1L, 1L, 1L,
> test-nestedLogit.R: 1L, 1L, 0L, 0L, 0L, 1L, 1L, 1L, 0L, 0L, 0L, 1L, 1L, 0L, 0L, 1L,
> test-nestedLogit.R: 1L, 1L, 1L, 1L, 1L, 0L, 1L, 1L, 1L, 1L, 1L, 0L, 0L, 0L, 0L, 0L,
> test-nestedLogit.R: 1L, 1L, 0L, 0L, 1L, 0L, 0L, 1L, 1L, 1L, 0L, 1L, 1L, 1L, 0L, 0L
> test-nestedLogit.R: ), full = c(1L, 1L, 0L, 1L, 1L, 0L, 0L, 0L, 1L, 1L, 0L, 0L, 0L,
> test-nestedLogit.R: 1L, 0L, 1L, 1L, 0L, 1L, 0L, 0L, 0L, 1L, 1L, 0L, 1L, 1L, 0L, 0L,
> test-nestedLogit.R: 0L, 1L, 1L, 1L, 1L, 0L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L))
> test-polr.R:
> test-polr.R: Re-fitting to get Hessian
> test-polr.R:
> test-polr.R:
> test-polr.R: Re-fitting to get Hessian
> test-polr.R:
> test-survey_coxph.R: Stratified Independent Sampling design (with replacement)
> test-survey_coxph.R: dpbc <- survey::svydesign(
> test-survey_coxph.R: id = ~1,
> test-survey_coxph.R: prob = ~randprob,
> test-survey_coxph.R: strata = ~edema,
> test-survey_coxph.R: data = subset(pbc, randomized)
> test-survey_coxph.R: )
> test-survey_coxph.R: Stratified Independent Sampling design (with replacement)
> test-survey_coxph.R: dpbc <- survey::svydesign(
> test-survey_coxph.R: id = ~1,
> test-survey_coxph.R: prob = ~randprob,
> test-survey_coxph.R: strata = ~edema,
> test-survey_coxph.R: data = subset(pbc, randomized)
> test-survey_coxph.R: )
> test-survey_coxph.R: Stratified Independent Sampling design (with replacement)
> test-survey_coxph.R: dpbc <- survey::svydesign(
> test-survey_coxph.R: id = ~1,
> test-survey_coxph.R: prob = ~randprob,
> test-survey_coxph.R: strata = ~edema,
> test-survey_coxph.R: data = subset(pbc, randomized)
> test-survey_coxph.R: )
[ FAIL 2 | WARN 0 | SKIP 97 | PASS 3486 ]
══ Skipped tests (97) ══════════════════════════════════════════════════════════
• On CRAN (89): 'test-GLMMadaptive.R:2:1', 'test-averaging.R:1:1',
'test-bias_correction.R:1:1', 'test-betareg.R:197:5', 'test-blmer.R:262:3',
'test-brms_aterms.R:1:1', 'test-brms.R:1:1', 'test-brms_missing.R:1:1',
'test-brms_gr_random_effects.R:1:1', 'test-brms_mm.R:1:1',
'test-brms_von_mises.R:1:1', 'test-clean_names.R:109:3',
'test-clean_parameters.R:1:1', 'test-coxme.R:1:1', 'test-clmm.R:170:3',
'test-cpglmm.R:152:3', 'test-export_table.R:6:3', 'test-export_table.R:18:3',
'test-export_table.R:152:3', 'test-export_table.R:273:3',
'test-export_table.R:327:1', 'test-export_table.R:814:3',
'test-export_table.R:858:3', 'test-export_table.R:918:1',
'test-export_table.R:939:3', 'test-export_table.R:1003:3',
'test-find_smooth.R:39:3', 'test-fixest.R:2:1', 'test-find_random.R:43:3',
'test-format_table.R:2:1', 'test-format_table_ci.R:73:3', 'test-gam.R:2:1',
'test-get_data.R:507:1', 'test-get_loglikelihood.R:143:3',
'test-get_loglikelihood.R:223:3', 'test-get_loglikelihood.R:320:3',
'test-get_predicted.R:2:1', 'test-get_priors.R:1:1',
'test-get_residuals.R:68:3', 'test-get_residuals.R:97:3',
'test-get_varcov.R:43:3', 'test-get_varcov.R:57:3',
'test-get_datagrid.R:1092:3', 'test-get_datagrid.R:1129:5',
'test-is_converged.R:47:1', 'test-iv_robust.R:120:3', 'test-lavaan.R:1:1',
'test-lcmm.R:1:1', 'test-lme.R:28:3', 'test-lme.R:212:3',
'test-glmmTMB.R:67:3', 'test-glmmTMB.R:767:3', 'test-glmmTMB.R:803:3',
'test-glmmTMB.R:1142:3', 'test-marginaleffects.R:1:1', 'test-mgcv.R:1:1',
'test-mipo.R:1:1', 'test-mlogit.R:1:1', 'test-model_info.R:106:3',
'test-modelbased.R:1:1', 'test-mvrstanarm.R:1:1', 'test-null_model.R:85:3',
'test-panelr-asym.R:165:3', 'test-panelr.R:301:3', 'test-phylolm.R:1:1',
'test-print_parameters.R:1:1', 'test-r2_nakagawa_bernoulli.R:1:1',
'test-r2_nakagawa_beta.R:1:1', 'test-r2_nakagawa_binomial.R:1:1',
'test-r2_nakagawa_gamma.R:1:1', 'test-r2_nakagawa_linear.R:1:1',
'test-r2_nakagawa_negbin.R:1:1', 'test-r2_nakagawa_negbin_zi.R:1:1',
'test-r2_nakagawa_ordered_beta.R:1:1', 'test-r2_nakagawa_poisson.R:1:1',
'test-r2_nakagawa_poisson_zi.R:1:1',
'test-r2_nakagawa_truncated_poisson.R:1:1', 'test-r2_nakagawa_tweedie.R:1:1',
'test-rlmer.R:276:3', 'test-rms.R:1:1', 'test-rqss.R:1:1',
'test-rstanarm.R:1:1', 'test-sdmTMB.R:1:1', 'test-selection.R:2:1',
'test-spatial.R:2:1', 'test-svylme.R:1:1', 'test-tidymodels.R:1:1',
'test-vgam.R:2:1', 'test-weightit.R:1:1'
• On Linux (3): 'test-BayesFactorBF.R:1:1', 'test-MCMCglmm.R:1:1',
'test-get_data.R:161:3'
• Package `logistf` is loaded and breaks `mmrm::mmrm()` (1): 'test-mmrm.R:4:1'
• TRUE is TRUE (1): 'test-feis.R:3:1'
• works interactively (2): 'test-coxph-panel.R:34:3', 'test-coxph.R:38:3'
• {bigglm} is not installed (1): 'test-model_info.R:24:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-epiR.R:22:3'): get_parameters ────────────────────────────────
Expected `params$Estimate` to equal `c(4.00754, 4.02561, 0.44835, 0.75047, 0.17642, 0.54201)`.
Differences:
actual | expected
[1] 4.00753676470588 - 4.00754 [1]
[2] 4.02561257512714 - 4.02561 [2]
[3] 0.448350740117156 - 0.44835 [3]
[4] 0.750470161919178 - 0.75047 [4]
[5] 0.176421557051525 - 0.17642 [5]
[6] 0.54200622805274 - 0.54201 [6]
[7] 7.47925307739092 -
── Failure ('test-epiR.R:27:3'): get_parameters ────────────────────────────────
Expected `params$Parameter` to equal `c("RR", "OR", "ARisk", "AFRisk", "PARisk", "PAFRisk")`.
Differences:
`actual[4:7]`: "AFRisk" "PARisk" "PAFRisk" "E"
`expected[4:6]`: "AFRisk" "PARisk" "PAFRisk"
[ FAIL 2 | WARN 0 | SKIP 97 | PASS 3486 ]
Error:
! Test failures.
Execution halted
Flavor: r-release-linux-x86_64
Version: 1.4.6
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: 'fungible'
Flavor: r-oldrel-windows-x86_64
Version: 1.4.6
Check: tests
Result: ERROR
Running 'testthat.R' [223s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> library(insight)
> test_check("insight")
Starting 2 test processes.
Saving _problems/test-epiR-26.R
Saving _problems/test-epiR-30.R
> test-find_transformation.R: boundary (singular) fit: see help('isSingular')
> test-gamlss.R: GAMLSS-RS iteration 1: Global Deviance = 365.2328
> test-gamlss.R: GAMLSS-RS iteration 2: Global Deviance = 365.1292
> test-gamlss.R: GAMLSS-RS iteration 3: Global Deviance = 365.1269
> test-gamlss.R: GAMLSS-RS iteration 4: Global Deviance = 365.1268
> test-gamlss.R: GAMLSS-RS iteration 1: Global Deviance = 5779.746
> test-gamlss.R: GAMLSS-RS iteration 2: Global Deviance = 5779.746
> test-gamlss.R: GAMLSS-RS iteration 1: Global Deviance = 703.1164
> test-gamlss.R: GAMLSS-RS iteration 2: Global Deviance = 703.1164
> test-get_model.R: Loading required namespace: GPArotation
> test-get_random.R: boundary (singular) fit: see help('isSingular')
> test-glmmPQL.R: iteration 1
> test-is_converged.R: boundary (singular) fit: see help('isSingular')
> test-mmrm.R: mmrm() registered as emmeans extension
> test-mmrm.R: mmrm() registered as car::Anova extension
> test-model_info.R: boundary (singular) fit: see help('isSingular')
> test-nestedLogit.R: list(work = c(0L, 0L, 0L, 0L, 0L, 0L, 0L, 1L, 0L, 0L, 0L, 1L,
> test-nestedLogit.R: 0L, 0L, 0L, 0L, 1L, 1L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L,
> test-nestedLogit.R: 0L, 1L, 1L, 1L, 0L, 1L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 1L, 1L, 1L,
> test-nestedLogit.R: 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 1L, 1L, 1L, 1L, 1L, 1L,
> test-nestedLogit.R: 1L, 1L, 0L, 0L, 0L, 1L, 1L, 1L, 0L, 0L, 0L, 1L, 1L, 0L, 0L, 1L,
> test-nestedLogit.R: 1L, 1L, 1L, 1L, 1L, 0L, 1L, 1L, 1L, 1L, 1L, 0L, 0L, 0L, 0L, 0L,
> test-nestedLogit.R: 1L, 1L, 0L, 0L, 1L, 0L, 0L, 1L, 1L, 1L, 0L, 1L, 1L, 1L, 0L, 0L
> test-nestedLogit.R: ), full = c(1L, 1L, 0L, 1L, 1L, 0L, 0L, 0L, 1L, 1L, 0L, 0L, 0L,
> test-nestedLogit.R: 1L, 0L, 1L, 1L, 0L, 1L, 0L, 0L, 0L, 1L, 1L, 0L, 1L, 1L, 0L, 0L,
> test-nestedLogit.R: 0L, 1L, 1L, 1L, 1L, 0L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L))
> test-polr.R:
> test-polr.R: Re-fitting to get Hessian
> test-polr.R:
> test-polr.R:
> test-polr.R: Re-fitting to get Hessian
> test-polr.R:
> test-survey_coxph.R: Stratified Independent Sampling design (with replacement)
> test-survey_coxph.R: dpbc <- survey::svydesign(
> test-survey_coxph.R: id = ~1,
> test-survey_coxph.R: prob = ~randprob,
> test-survey_coxph.R: strata = ~edema,
> test-survey_coxph.R: data = subset(pbc, randomized)
> test-survey_coxph.R: )
> test-survey_coxph.R: Stratified Independent Sampling design (with replacement)
> test-survey_coxph.R: dpbc <- survey::svydesign(
> test-survey_coxph.R: id = ~1,
> test-survey_coxph.R: prob = ~randprob,
> test-survey_coxph.R: strata = ~edema,
> test-survey_coxph.R: data = subset(pbc, randomized)
> test-survey_coxph.R: )
> test-survey_coxph.R: Stratified Independent Sampling design (with replacement)
> test-survey_coxph.R: dpbc <- survey::svydesign(
> test-survey_coxph.R: id = ~1,
> test-survey_coxph.R: prob = ~randprob,
> test-survey_coxph.R: strata = ~edema,
> test-survey_coxph.R: data = subset(pbc, randomized)
> test-survey_coxph.R: )
[ FAIL 2 | WARN 0 | SKIP 97 | PASS 3578 ]
══ Skipped tests (97) ══════════════════════════════════════════════════════════
• On CRAN (89): 'test-GLMMadaptive.R:2:1', 'test-averaging.R:1:1',
'test-bias_correction.R:1:1', 'test-blmer.R:262:3', 'test-betareg.R:197:5',
'test-brms_aterms.R:1:1', 'test-brms.R:1:1',
'test-brms_gr_random_effects.R:1:1', 'test-brms_missing.R:1:1',
'test-brms_mm.R:1:1', 'test-brms_von_mises.R:1:1',
'test-clean_names.R:109:3', 'test-clean_parameters.R:1:1',
'test-coxme.R:1:1', 'test-cpglmm.R:152:3', 'test-clmm.R:170:3',
'test-export_table.R:6:3', 'test-export_table.R:18:3',
'test-export_table.R:152:3', 'test-export_table.R:273:3',
'test-export_table.R:327:1', 'test-export_table.R:814:3',
'test-export_table.R:858:3', 'test-export_table.R:918:1',
'test-export_table.R:939:3', 'test-export_table.R:1003:3',
'test-find_random.R:43:3', 'test-fixest.R:2:1', 'test-format_table.R:2:1',
'test-format_table_ci.R:73:3', 'test-gam.R:2:1', 'test-find_smooth.R:39:3',
'test-get_data.R:507:1', 'test-get_loglikelihood.R:143:3',
'test-get_loglikelihood.R:223:3', 'test-get_loglikelihood.R:320:3',
'test-get_predicted.R:2:1', 'test-get_priors.R:1:1',
'test-get_residuals.R:68:3', 'test-get_residuals.R:97:3',
'test-get_varcov.R:43:3', 'test-get_varcov.R:57:3',
'test-get_datagrid.R:1092:3', 'test-get_datagrid.R:1129:5',
'test-is_converged.R:47:1', 'test-iv_robust.R:120:3', 'test-lavaan.R:1:1',
'test-lcmm.R:1:1', 'test-lme.R:28:3', 'test-lme.R:212:3',
'test-glmmTMB.R:67:3', 'test-glmmTMB.R:767:3', 'test-glmmTMB.R:803:3',
'test-glmmTMB.R:1142:3', 'test-marginaleffects.R:1:1', 'test-mgcv.R:1:1',
'test-mipo.R:1:1', 'test-mlogit.R:1:1', 'test-model_info.R:106:3',
'test-modelbased.R:1:1', 'test-mvrstanarm.R:1:1', 'test-null_model.R:85:3',
'test-panelr-asym.R:165:3', 'test-panelr.R:301:3', 'test-phylolm.R:1:1',
'test-print_parameters.R:1:1', 'test-r2_nakagawa_bernoulli.R:1:1',
'test-r2_nakagawa_beta.R:1:1', 'test-r2_nakagawa_binomial.R:1:1',
'test-r2_nakagawa_gamma.R:1:1', 'test-r2_nakagawa_linear.R:1:1',
'test-r2_nakagawa_negbin.R:1:1', 'test-r2_nakagawa_negbin_zi.R:1:1',
'test-r2_nakagawa_ordered_beta.R:1:1', 'test-r2_nakagawa_poisson.R:1:1',
'test-r2_nakagawa_poisson_zi.R:1:1',
'test-r2_nakagawa_truncated_poisson.R:1:1', 'test-r2_nakagawa_tweedie.R:1:1',
'test-rlmer.R:276:3', 'test-rms.R:1:1', 'test-rqss.R:1:1',
'test-rstanarm.R:1:1', 'test-sdmTMB.R:1:1', 'test-selection.R:2:1',
'test-spatial.R:2:1', 'test-svylme.R:1:1', 'test-tidymodels.R:1:1',
'test-vgam.R:2:1', 'test-weightit.R:1:1'
• Package `logistf` is loaded and breaks `mmrm::mmrm()` (1): 'test-mmrm.R:4:1'
• TRUE is TRUE (1): 'test-feis.R:3:1'
• getRversion() < "4.5.0" is TRUE (3): 'test-aov.R:2:3', 'test-dbart.R:2:1',
'test-get_modelmatrix.R:127:3'
• works interactively (2): 'test-coxph-panel.R:34:3', 'test-coxph.R:38:3'
• {bigglm} is not installed (1): 'test-model_info.R:24:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-epiR.R:22:3'): get_parameters ────────────────────────────────
Expected `params$Estimate` to equal `c(4.00754, 4.02561, 0.44835, 0.75047, 0.17642, 0.54201)`.
Differences:
actual | expected
[1] 4.00753676470588 - 4.00754 [1]
[2] 4.02561257512714 - 4.02561 [2]
[3] 0.448350740117156 - 0.44835 [3]
[4] 0.750470161919178 - 0.75047 [4]
[5] 0.176421557051525 - 0.17642 [5]
[6] 0.54200622805274 - 0.54201 [6]
[7] 7.47925307739092 -
── Failure ('test-epiR.R:27:3'): get_parameters ────────────────────────────────
Expected `params$Parameter` to equal `c("RR", "OR", "ARisk", "AFRisk", "PARisk", "PAFRisk")`.
Differences:
`actual[4:7]`: "AFRisk" "PARisk" "PAFRisk" "E"
`expected[4:6]`: "AFRisk" "PARisk" "PAFRisk"
[ FAIL 2 | WARN 0 | SKIP 97 | PASS 3578 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-windows-x86_64
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