CRAN Package Check Results for Maintainer ‘Martin R. Smith <martin.smith at durham.ac.uk>’

Last updated on 2026-03-10 21:54:00 CET.

Package	ERROR	WARN	NOTE	OK
CongreveLamsdell2016	1			13
ips				14
PlotTools				14
Quartet				14
Rogue				14
TBRDist				14
Ternary			3	11
TotalCopheneticIndex			2	12
TreeDist			3	11
TreeSearch			3	11
TreeTools		2	1	11

Package CongreveLamsdell2016

Current CRAN status: ERROR: 1, OK: 13

Version: 1.0.3
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: ... --- re-building ‘Compare-methods.Rmd’ using rmarkdown [WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead. --- finished re-building 'Compare-methods.Rmd' --- re-building ‘Compare-node-supports.Rmd’ using rmarkdown [WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead. Could not fetch http://www.zotero.org/styles/proceedings-of-the-royal-society-b HttpExceptionRequest Request { host = "www.zotero.org" port = 80 secure = False requestHeaders = [] path = "/styles/proceedings-of-the-royal-society-b" queryString = "" method = "GET" proxy = Nothing rawBody = False redirectCount = 10 responseTimeout = ResponseTimeoutDefault requestVersion = HTTP/1.1 proxySecureMode = ProxySecureWithConnect } ConnectionTimeout Error: processing vignette 'Compare-node-supports.Rmd' failed with diagnostics: pandoc document conversion failed with error 61 --- failed re-building 'Compare-node-supports.Rmd' --- re-building ‘Conduct-analyses.Rmd’ using rmarkdown [WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead. --- finished re-building ‘Conduct-analyses.Rmd’ SUMMARY: processing the following file failed: ‘Compare-node-supports.Rmd’ Error: Vignette re-building failed. Execution halted Flavor: r-devel-linux-x86_64-debian-gcc

Package ips

Current CRAN status: OK: 14

Package PlotTools

Current CRAN status: OK: 14

Package Quartet

Current CRAN status: OK: 14

Package Rogue

Current CRAN status: OK: 14

Package TBRDist

Current CRAN status: OK: 14

Package Ternary

Current CRAN status: NOTE: 3, OK: 11

Version: 2.3.6
Check: installed package size
Result: NOTE installed size is 6.4Mb sub-directories of 1Mb or more: doc 5.4Mb Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Package TotalCopheneticIndex

Current CRAN status: NOTE: 2, OK: 12

Version: 2.0.1
Check: CRAN incoming feasibility
Result: NOTE Maintainer: ‘Martin R. Smith <martin.smith@durham.ac.uk>’ Package CITATION file contains call(s) to old-style personList() or as.personList(). Please use c() on person objects instead. Package CITATION file contains call(s) to old-style citEntry(). Please use bibentry() instead. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Package TreeDist

Current CRAN status: NOTE: 3, OK: 11

Version: 2.12.0
Check: package dependencies
Result: NOTE Package suggested but not available for checking: ‘TreeDistData’ Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Version: 2.12.0
Check: installed package size
Result: NOTE installed size is 6.7Mb sub-directories of 1Mb or more: doc 1.1Mb libs 4.8Mb Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64

Package TreeSearch

Current CRAN status: NOTE: 3, OK: 11

Version: 1.7.0
Check: installed package size
Result: NOTE installed size is 6.3Mb sub-directories of 1Mb or more: datasets 1.6Mb doc 1.3Mb libs 1.7Mb Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Package TreeTools

Current CRAN status: WARN: 2, NOTE: 1, OK: 11

Version: 2.1.0
Check: Rd files
Result: WARN 2026-02-12 17:57:07.339 R[32376:687541] XType: Using static font registry. Flavor: r-release-macos-arm64

Version: 2.1.0
Check: installed package size
Result: NOTE installed size is 6.9Mb sub-directories of 1Mb or more: R 1.1Mb libs 4.8Mb Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64

Version: 2.1.0
Check: Rd files
Result: WARN 2026-02-12 17:41:55.912 R[9470:188955] XType: Using static font registry. Flavor: r-oldrel-macos-arm64