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Last updated on 2026-09-01 05:53:20 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 2.0.1 | 54.35 | 57.19 | 111.54 | OK | |
| r-devel-linux-x86_64-debian-gcc | 2.0.1 | 47.72 | 45.58 | 93.30 | OK | |
| r-devel-linux-x86_64-fedora-clang | 2.0.1 | 38.00 | 41.77 | 79.77 | ERROR | |
| r-devel-linux-x86_64-fedora-gcc | 2.0.1 | 52.00 | 45.31 | 97.31 | OK | |
| r-devel-windows-x86_64 | 2.0.1 | 70.00 | 197.00 | 267.00 | OK | |
| r-patched-linux-x86_64 | 2.0.1 | 57.84 | 53.36 | 111.20 | OK | |
| r-release-linux-x86_64 | 2.0.1 | 72.81 | 53.58 | 126.39 | OK | |
| r-release-macos-arm64 | 2.0.1 | 13.00 | 18.00 | 31.00 | OK | |
| r-release-macos-x86_64 | 2.0.1 | 46.00 | 113.00 | 159.00 | OK | |
| r-release-windows-x86_64 | 2.0.1 | 74.00 | 97.00 | 171.00 | OK | |
| r-oldrel-macos-arm64 | 2.0.1 | 13.00 | 21.00 | 34.00 | OK | |
| r-oldrel-macos-x86_64 | 2.0.1 | 46.00 | 185.00 | 231.00 | OK | |
| r-oldrel-windows-x86_64 | 2.0.1 | 88.00 | 201.00 | 289.00 | OK |
Version: 2.0.1
Check: examples
Result: ERROR
Running examples in ‘TBRDist-Ex.R’ failed
The error most likely occurred in:
> ### Name: RSPRDist
> ### Title: Calculate rSPR distance between rooted trees
> ### Aliases: RSPRDist
>
> ### ** Examples
>
> library(ape)
> set.seed(1)
> tree1 <- rtree(8)
> tree2 <- rtree(8)
> tree1$tip.label <- tree2$tip.label <- paste0("t", 1:8)
>
> RSPRDist(tree1, tree2)
*** caught segfault ***
address (nil), cause 'memory not mapped'
Traceback:
1: rspr_dist(treeLists[[1]], treeLists[[2]], approx = approx, exact = !approx)
2: RSPRDist(tree1, tree2)
An irrecoverable exception occurred. R is aborting now ...
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 2.0.1
Check: tests
Result: ERROR
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library('testthat')
> library('TBRDist')
>
> test_check("TBRDist")
*** caught segfault ***
address (nil), cause 'memory not mapped'
Traceback:
1: rspr_dist(treeLists[[1]], treeLists[[2]], approx = approx, exact = !approx)
2: RSPRDist(t, t)
3: eval_bare(expr, quo_get_env(quo))
4: quasi_label(enquo(object), label)
5: expect_identical(RSPRDist(t, t), 0L)
6: eval(code, test_env)
7: eval(code, test_env)
8: withCallingHandlers({ eval(code, test_env) new_expectations <- the$test_expectations > starting_expectations if (snapshot_skipped) { skip("On CRAN") } else if (!new_expectations && skip_on_empty) { skip_empty() }}, expectation = handle_expectation, packageNotFoundError = function(e) { if (on_cran()) { skip(paste0("{", e$package, "} is not installed.")) }}, snapshot_on_cran = function(cnd) { snapshot_skipped <<- TRUE invokeRestart("muffle_cran_snapshot")}, skip = handle_skip, warning = handle_warning, message = handle_message, error = handle_error, interrupt = handle_interrupt)
9: doTryCatch(return(expr), name, parentenv, handler)
10: tryCatchOne(expr, names, parentenv, handlers[[1L]])
11: tryCatchList(expr, classes, parentenv, handlers)
12: tryCatch(withCallingHandlers({ eval(code, test_env) new_expectations <- the$test_expectations > starting_expectations if (snapshot_skipped) { skip("On CRAN") } else if (!new_expectations && skip_on_empty) { skip_empty() }}, expectation = handle_expectation, packageNotFoundError = function(e) { if (on_cran()) { skip(paste0("{", e$package, "} is not installed.")) }}, snapshot_on_cran = function(cnd) { snapshot_skipped <<- TRUE invokeRestart("muffle_cran_snapshot")}, skip = handle_skip, warning = handle_warning, message = handle_message, error = handle_error, interrupt = handle_interrupt), error = handle_fatal)
13: doWithOneRestart(return(expr), restart)
14: withOneRestart(expr, restarts[[1L]])
15: withRestarts(tryCatch(withCallingHandlers({ eval(code, test_env) new_expectations <- the$test_expectations > starting_expectations if (snapshot_skipped) { skip("On CRAN") } else if (!new_expectations && skip_on_empty) { skip_empty() }}, expectation = handle_expectation, packageNotFoundError = function(e) { if (on_cran()) { skip(paste0("{", e$package, "} is not installed.")) }}, snapshot_on_cran = function(cnd) { snapshot_skipped <<- TRUE invokeRestart("muffle_cran_snapshot")}, skip = handle_skip, warning = handle_warning, message = handle_message, error = handle_error, interrupt = handle_interrupt), error = handle_fatal), end_test = function() { })
16: test_code(code, parent.frame())
17: test_that("distance between identical trees is 0", { t <- Tree("((((1,2),(3,4)),((5,6),(7,8))),(((9,10),(11,12)),((13,14),(15,16))));") expect_identical(RSPRDist(t, t), 0L)})
18: eval(code, test_env)
19: eval(code, test_env)
20: withCallingHandlers({ eval(code, test_env) new_expectations <- the$test_expectations > starting_expectations if (snapshot_skipped) { skip("On CRAN") } else if (!new_expectations && skip_on_empty) { skip_empty() }}, expectation = handle_expectation, packageNotFoundError = function(e) { if (on_cran()) { skip(paste0("{", e$package, "} is not installed.")) }}, snapshot_on_cran = function(cnd) { snapshot_skipped <<- TRUE invokeRestart("muffle_cran_snapshot")}, skip = handle_skip, warning = handle_warning, message = handle_message, error = handle_error, interrupt = handle_interrupt)
21: doTryCatch(return(expr), name, parentenv, handler)
22: tryCatchOne(expr, names, parentenv, handlers[[1L]])
23: tryCatchList(expr, classes, parentenv, handlers)
24: tryCatch(withCallingHandlers({ eval(code, test_env) new_expectations <- the$test_expectations > starting_expectations if (snapshot_skipped) { skip("On CRAN") } else if (!new_expectations && skip_on_empty) { skip_empty() }}, expectation = handle_expectation, packageNotFoundError = function(e) { if (on_cran()) { skip(paste0("{", e$package, "} is not installed.")) }}, snapshot_on_cran = function(cnd) { snapshot_skipped <<- TRUE invokeRestart("muffle_cran_snapshot")}, skip = handle_skip, warning = handle_warning, message = handle_message, error = handle_error, interrupt = handle_interrupt), error = handle_fatal)
25: doWithOneRestart(return(expr), restart)
26: withOneRestart(expr, restarts[[1L]])
27: withRestarts(tryCatch(withCallingHandlers({ eval(code, test_env) new_expectations <- the$test_expectations > starting_expectations if (snapshot_skipped) { skip("On CRAN") } else if (!new_expectations && skip_on_empty) { skip_empty() }}, expectation = handle_expectation, packageNotFoundError = function(e) { if (on_cran()) { skip(paste0("{", e$package, "} is not installed.")) }}, snapshot_on_cran = function(cnd) { snapshot_skipped <<- TRUE invokeRestart("muffle_cran_snapshot")}, skip = handle_skip, warning = handle_warning, message = handle_message, error = handle_error, interrupt = handle_interrupt), error = handle_fatal), end_test = function() { })
28: test_code(code = exprs, env = env, reporter = get_reporter() %||% StopReporter$new())
29: source_file(path, env = env(env), desc = desc, shuffle = shuffle, error_call = error_call)
30: FUN(X[[i]], ...)
31: lapply(test_paths, test_one_file, env = env, desc = desc, shuffle = shuffle, error_call = error_call)
32: doTryCatch(return(expr), name, parentenv, handler)
33: tryCatchOne(expr, names, parentenv, handlers[[1L]])
34: tryCatchList(expr, classes, parentenv, handlers)
35: tryCatch(code, testthat_abort_reporter = function(cnd) { cat(conditionMessage(cnd), "\n") NULL})
36: with_reporter(reporters$multi, lapply(test_paths, test_one_file, env = env, desc = desc, shuffle = shuffle, error_call = error_call))
37: test_files_serial(test_dir = test_dir, test_package = test_package, test_paths = test_paths, load_helpers = load_helpers, reporter = reporter, env = env, stop_on_failure = stop_on_failure, stop_on_warning = stop_on_warning, desc = desc, load_package = load_package, shuffle = shuffle, error_call = error_call)
38: test_files(test_dir = path, test_paths = test_paths, test_package = package, reporter = reporter, load_helpers = load_helpers, env = env, stop_on_failure = stop_on_failure, stop_on_warning = stop_on_warning, load_package = load_package, parallel = parallel, shuffle = shuffle)
39: test_dir("testthat", package = package, reporter = reporter, ..., load_package = "installed")
40: test_check("TBRDist")
An irrecoverable exception occurred. R is aborting now ...
Flavor: r-devel-linux-x86_64-fedora-clang
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