CRAN Package Check Results for Maintainer ‘Joshua W. Lambert <joshua.lambert at lshtm.ac.uk>’

Last updated on 2026-02-15 09:51:00 CET.

Package	ERROR	NOTE	OK
DAISIEprep			14
epiparameter	1		13
epiparameterDB			14
simulist		3	11
superspreading			14

Package DAISIEprep

Current CRAN status: OK: 14

Package epiparameter

Current CRAN status: ERROR: 1, OK: 13

Version: 0.4.1
Check: tests
Result: ERROR Running ‘spelling.R’ [0s/0s] Running ‘testthat.R’ [42s/43s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/tests.html > # * https://testthat.r-lib.org/reference/test_package.html#special-files > > # nolint start > library(testthat) > library(epiparameter) > # nolint end > > test_check("epiparameter") Citation cannot be created as author, year, journal or title is missing Saving _problems/test-extract_param-266.R Returning 4 results that match the criteria (4 are parameterised). Use subset to filter by entry variables or single_epiparameter to return a single entry. To retrieve the citation for each use the 'get_citation' function Returning 3 results that match the criteria (3 are parameterised). Use subset to filter by entry variables or single_epiparameter to return a single entry. To retrieve the citation for each use the 'get_citation' function [ FAIL 1 | WARN 2 | SKIP 30 | PASS 523 ] ══ Skipped tests (30) ══════════════════════════════════════════════════════════ • On CRAN (23): 'test-convert_params.R:13:1', 'test-convert_params.R:53:1', 'test-convert_params.R:114:1', 'test-convert_params.R:144:1', 'test-epiparameter.R:176:1', 'test-epiparameter.R:197:1', 'test-epiparameter.R:219:1', 'test-extract_param.R:294:3', 'test-extract_param.R:363:3', 'test-parameter_tbl.R:4:1', 'test-parameter_tbl.R:16:1', 'test-parameter_tbl.R:31:1', 'test-parameter_tbl.R:46:1', 'test-parameter_tbl.R:61:1', 'test-parameter_tbl.R:76:1', 'test-parameter_tbl.R:92:1', 'test-parameter_tbl.R:105:1', 'test-parameter_tbl.R:118:1', 'test-plot.R:1:1', 'test-print.R:4:1', 'test-print.R:9:1', 'test-print.R:16:1', 'test-print.R:27:1' • {epireview} is not installed (7): 'test-coercion.R:13:3', 'test-coercion.R:39:3', 'test-coercion.R:63:3', 'test-coercion.R:88:3', 'test-coercion.R:114:3', 'test-coercion.R:140:3', 'test-coercion.R:169:3' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-extract_param.R:256:3'): .extract_param works for lnorm percentiles ── Expected `lnorm_params` to equal `list(...)`. Differences: `actual$convergence`: 52.0 `expected$convergence`: 0.0 `actual$message`: "ERROR: ABNORMAL_TERMINATION_IN_LNSRCH" `expected$message`: "CONVERGENCE: NORM OF PROJECTED GRADIENT <= PGTOL" [ FAIL 1 | WARN 2 | SKIP 30 | PASS 523 ] Error: ! Test failures. Execution halted Flavor: r-devel-macos-arm64

Package epiparameterDB

Current CRAN status: OK: 14

Package simulist

Current CRAN status: NOTE: 3, OK: 11

Version: 0.7.0
Check: installed package size
Result: NOTE installed size is 7.9Mb sub-directories of 1Mb or more: doc 7.0Mb Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Package superspreading

Current CRAN status: OK: 14