CRAN Package Check Results for Maintainer ‘James Thorson <James.Thorson at noaa.gov>’

Last updated on 2025-04-12 20:52:16 CEST.

Package	ERROR	NOTE	OK
dsem	3	2	9
ecostate			14
phylosem		5	10
tinyVAST	1	6	8

Package dsem

Current CRAN status: ERROR: 3, NOTE: 2, OK: 9

Version: 1.6.0
Check: installed package size
Result: NOTE installed size is 85.2Mb sub-directories of 1Mb or more: libs 84.4Mb Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64

Version: 1.6.0
Check: examples
Result: ERROR Running examples in ‘dsem-Ex.R’ failed The error most likely occurred in: > ### Name: dsemRTMB > ### Title: Fit dynamic structural equation model > ### Aliases: dsemRTMB > > ### ** Examples > > # Define model > sem = " + # Link, lag, param_name + cprofits -> consumption, 0, a1 + cprofits -> consumption, 1, a2 + pwage -> consumption, 0, a3 + gwage -> consumption, 0, a3 + cprofits -> invest, 0, b1 + cprofits -> invest, 1, b2 + capital -> invest, 0, b3 + gnp -> pwage, 0, c2 + gnp -> pwage, 1, c3 + time -> pwage, 0, c1 + " > > # Load data > data(KleinI, package="AER") > TS = ts(data.frame(KleinI, "time"=time(KleinI) - 1931)) > tsdata = TS[,c("time","gnp","pwage","cprofits",'consumption', + "gwage","invest","capital")] > > # Fit model > fit = dsemRTMB( sem=sem, + tsdata = tsdata, + estimate_delta0 = TRUE, + control = dsem_control(quiet=TRUE) ) Read 10 records Error in advector(e1) : Invalid argument to 'advector' (lost class attribute?) Calls: dsemRTMB ... dgmrf -> as.vector -> Ops.advector -> Arith2 -> advector Execution halted Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Version: 1.6.0
Check: tests
Result: ERROR Running ‘testthat.R’ [5s/6s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > > > library(testthat) > library(dsem) > > # Run tests > testthat::test_check("dsem") Read 4 records Coefficient_name Number_of_coefficients Type 1 beta_z 6 Fixed 2 mu_j 2 Random Read 4 records Coefficient_name Number_of_coefficients Type 1 beta_z 6 Fixed 2 mu_j 2 Random 3 x_tj 200 Random Read 4 records Read 5 records Coefficient_name Number_of_coefficients Type 1 beta_z 7 Fixed 2 delta0_j 2 Fixed 3 lnsigma_j 2 Fixed 4 mu_j 2 Random 5 x_tj 122 Random Read 5 records Coefficient_name Number_of_coefficients Type 1 beta_z 7 Fixed 2 delta0_j 2 Fixed 3 mu_j 2 Random 4 x_tj 122 Random Read 5 records Coefficient_name Number_of_coefficients Type 1 beta_z 7 Fixed 2 delta0_j 2 Fixed 3 mu_j 2 Random 4 x_tj 122 Random Read 5 records Coefficient_name Number_of_coefficients Type 1 beta_z 6 Fixed 2 delta0_j 2 Fixed 3 mu_j 2 Random Read 4 records Coefficient_name Number_of_coefficients Type 1 beta_z 6 Fixed 2 delta0_j 2 Fixed 3 mu_j 2 Random Read 4 records Coefficient_name Number_of_coefficients Type 1 beta_z 6 Fixed 2 mu_j 2 Random Read 4 records Coefficient_name Number_of_coefficients Type 1 beta_z 6 Fixed 2 delta0_j 2 Fixed 3 mu_j 2 Random Read 10 records Coefficient_name Number_of_coefficients Type 1 beta_z 17 Fixed 2 mu_j 8 Random Read 10 records Read 0 records Coefficient_name Number_of_coefficients Type 1 beta_z 2 Fixed 2 mu_j 2 Random Read 2 records Coefficient_name Number_of_coefficients Type 1 beta_z 2 Fixed 2 mu_j 2 Random Read 4 records Coefficient_name Number_of_coefficients Type 1 beta_z 4 Fixed 2 mu_j 2 Random Read 4 records Coefficient_name Number_of_coefficients Type 1 lnsigma_j 2 Fixed 2 mu_j 2 Random 3 x_tj 122 Random Read 4 records Read 16 records Coefficient_name Number_of_coefficients Type 1 beta_z 24 Fixed 2 mu_j 8 Fixed 3 x_tj 232 Random Read 4 records Coefficient_name Number_of_coefficients Type 1 beta_z 5 Fixed 2 mu_j 4 Random Read 4 records Read 16 records [ FAIL 7 | WARN 10 | SKIP 0 | PASS 4 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-distributions.R:35:3'): dsem example is working ─────────────── Error in `advector(e2)`: Invalid argument to 'advector' (lost class attribute?) Backtrace: ▆ 1. └─dsem::dsemRTMB(...) at test-distributions.R:35:3 2. └─RTMB::MakeADFun(...) 3. └─obj$retape() 4. └─RTMB:::MakeADFunObject(...) 5. └─RTMB:::.MakeTape(mapfunc, obj$env$par) 6. └─RTMB (local) f(x) 7. └─dsem (local) func(pl) 8. └─dsem (local) f(p, ...) 9. └─RTMB::dgmrf(...) 10. └─RTMB::Ops.advector(as.vector(x), as.vector(mu)) 11. ├─RTMB:::Arith2(advector(e1), advector(e2), .Generic) 12. └─RTMB::advector(e2) ── Failure ('test-gmrf-versions.R:75:3'): dsem constant-variance options ────── apply(margvar, MARGIN = 2, FUN = sd) not equal to c(0, 0). 2/2 mismatches (average diff: NaN) [1] NA - 0 == NA [2] NA - 0 == NA ── Failure ('test-gmrf-versions.R:94:3'): dsem constant-variance options ────── apply(margvar, MARGIN = 2, FUN = sd) not equal to c(0, 0). 2/2 mismatches (average diff: NaN) [1] NA - 0 == NA [2] NA - 0 == NA ── Error ('test-platform.R:34:3'): dsem example is working ──────────────────── Error in `advector(e2)`: Invalid argument to 'advector' (lost class attribute?) Backtrace: ▆ 1. └─dsem::dsemRTMB(sem = sem, tsdata = tsdata, control = dsem_control(getsd = FALSE)) at test-platform.R:34:3 2. └─RTMB::MakeADFun(...) 3. └─obj$retape() 4. └─RTMB:::MakeADFunObject(...) 5. └─RTMB:::.MakeTape(mapfunc, obj$env$par) 6. └─RTMB (local) f(x) 7. └─dsem (local) func(pl) 8. └─dsem (local) f(p, ...) 9. └─RTMB::dgmrf(...) 10. └─RTMB::Ops.advector(as.vector(x), as.vector(mu)) 11. ├─RTMB:::Arith2(advector(e1), advector(e2), .Generic) 12. └─RTMB::advector(e2) ── Error ('test-platform.R:135:3'): dsem works with fixed variances ─────────── Error in `advector(e2)`: Invalid argument to 'advector' (lost class attribute?) Backtrace: ▆ 1. └─dsem::dsemRTMB(...) at test-platform.R:135:3 2. └─RTMB::MakeADFun(...) 3. └─obj$retape() 4. └─RTMB:::MakeADFunObject(...) 5. └─RTMB:::.MakeTape(mapfunc, obj$env$par) 6. └─RTMB (local) f(x) 7. └─dsem (local) func(pl) 8. └─dsem (local) f(p, ...) 9. └─RTMB::dgmrf(...) 10. └─RTMB::Ops.advector(as.vector(x), as.vector(mu)) 11. ├─RTMB:::Arith2(advector(e1), advector(e2), .Generic) 12. └─RTMB::advector(e2) ── Error ('test-platform.R:202:3'): Fixing parameters works ─────────────────── Error in `advector(e2)`: Invalid argument to 'advector' (lost class attribute?) Backtrace: ▆ 1. └─dsem::dsemRTMB(sem = sem, tsdata = tsdata, control = dsem_control(getsd = FALSE)) at test-platform.R:202:3 2. └─RTMB::MakeADFun(...) 3. └─obj$retape() 4. └─RTMB:::MakeADFunObject(...) 5. └─RTMB:::.MakeTape(mapfunc, obj$env$par) 6. └─RTMB (local) f(x) 7. └─dsem (local) func(pl) 8. └─dsem (local) f(p, ...) 9. └─RTMB::dgmrf(...) 10. └─RTMB::Ops.advector(as.vector(x), as.vector(mu)) 11. ├─RTMB:::Arith2(advector(e1), advector(e2), .Generic) 12. └─RTMB::advector(e2) ── Error ('test-priors.R:43:3'): priors interface is working ────────────────── Error in `advector(e2)`: Invalid argument to 'advector' (lost class attribute?) Backtrace: ▆ 1. └─dsem::dsemRTMB(...) at test-priors.R:43:3 2. └─RTMB::MakeADFun(...) 3. └─obj$retape() 4. └─RTMB:::MakeADFunObject(...) 5. └─RTMB:::.MakeTape(mapfunc, obj$env$par) 6. └─RTMB (local) f(x) 7. └─dsem (local) func(pl) 8. └─dsem (local) f(p, ...) 9. └─RTMB::dgmrf(...) 10. └─RTMB::Ops.advector(as.vector(x), as.vector(mu)) 11. ├─RTMB:::Arith2(advector(e1), advector(e2), .Generic) 12. └─RTMB::advector(e2) [ FAIL 7 | WARN 10 | SKIP 0 | PASS 4 ] Error: Test failures Execution halted Flavor: r-oldrel-macos-arm64

Version: 1.6.0
Check: tests
Result: ERROR Running ‘testthat.R’ [9s/13s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > > > library(testthat) > library(dsem) > > # Run tests > testthat::test_check("dsem") Read 4 records Coefficient_name Number_of_coefficients Type 1 beta_z 6 Fixed 2 mu_j 2 Random Read 4 records Coefficient_name Number_of_coefficients Type 1 beta_z 6 Fixed 2 mu_j 2 Random 3 x_tj 200 Random Read 4 records Read 5 records Coefficient_name Number_of_coefficients Type 1 beta_z 7 Fixed 2 delta0_j 2 Fixed 3 lnsigma_j 2 Fixed 4 mu_j 2 Random 5 x_tj 122 Random Read 5 records Coefficient_name Number_of_coefficients Type 1 beta_z 7 Fixed 2 delta0_j 2 Fixed 3 mu_j 2 Random 4 x_tj 122 Random Read 5 records Coefficient_name Number_of_coefficients Type 1 beta_z 7 Fixed 2 delta0_j 2 Fixed 3 mu_j 2 Random 4 x_tj 122 Random Read 5 records Coefficient_name Number_of_coefficients Type 1 beta_z 6 Fixed 2 delta0_j 2 Fixed 3 mu_j 2 Random Read 4 records Coefficient_name Number_of_coefficients Type 1 beta_z 6 Fixed 2 delta0_j 2 Fixed 3 mu_j 2 Random Read 4 records Coefficient_name Number_of_coefficients Type 1 beta_z 6 Fixed 2 mu_j 2 Random Read 4 records Coefficient_name Number_of_coefficients Type 1 beta_z 6 Fixed 2 delta0_j 2 Fixed 3 mu_j 2 Random Read 10 records Coefficient_name Number_of_coefficients Type 1 beta_z 17 Fixed 2 mu_j 8 Random Read 10 records Read 0 records Coefficient_name Number_of_coefficients Type 1 beta_z 2 Fixed 2 mu_j 2 Random Read 2 records Coefficient_name Number_of_coefficients Type 1 beta_z 2 Fixed 2 mu_j 2 Random Read 4 records Coefficient_name Number_of_coefficients Type 1 beta_z 4 Fixed 2 mu_j 2 Random Read 4 records Coefficient_name Number_of_coefficients Type 1 lnsigma_j 2 Fixed 2 mu_j 2 Random 3 x_tj 122 Random Read 4 records Read 16 records Coefficient_name Number_of_coefficients Type 1 beta_z 24 Fixed 2 mu_j 8 Fixed 3 x_tj 232 Random Read 4 records Coefficient_name Number_of_coefficients Type 1 beta_z 5 Fixed 2 mu_j 4 Random Read 4 records Read 16 records [ FAIL 7 | WARN 10 | SKIP 0 | PASS 4 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-distributions.R:35:3'): dsem example is working ─────────────── Error in `advector(e2)`: Invalid argument to 'advector' (lost class attribute?) Backtrace: ▆ 1. └─dsem::dsemRTMB(...) at test-distributions.R:35:3 2. └─RTMB::MakeADFun(...) 3. └─obj$retape() 4. └─RTMB:::MakeADFunObject(...) 5. └─RTMB:::.MakeTape(mapfunc, obj$env$par) 6. └─RTMB (local) f(x) 7. └─dsem (local) func(pl) 8. └─dsem (local) f(p, ...) 9. └─RTMB::dgmrf(...) 10. └─RTMB::Ops.advector(as.vector(x), as.vector(mu)) 11. ├─RTMB:::Arith2(advector(e1), advector(e2), .Generic) 12. └─RTMB::advector(e2) ── Failure ('test-gmrf-versions.R:75:3'): dsem constant-variance options ────── apply(margvar, MARGIN = 2, FUN = sd) not equal to c(0, 0). 2/2 mismatches (average diff: NaN) [1] NA - 0 == NA [2] NA - 0 == NA ── Failure ('test-gmrf-versions.R:94:3'): dsem constant-variance options ────── apply(margvar, MARGIN = 2, FUN = sd) not equal to c(0, 0). 2/2 mismatches (average diff: NaN) [1] NA - 0 == NA [2] NA - 0 == NA ── Error ('test-platform.R:34:3'): dsem example is working ──────────────────── Error in `advector(e2)`: Invalid argument to 'advector' (lost class attribute?) Backtrace: ▆ 1. └─dsem::dsemRTMB(sem = sem, tsdata = tsdata, control = dsem_control(getsd = FALSE)) at test-platform.R:34:3 2. └─RTMB::MakeADFun(...) 3. └─obj$retape() 4. └─RTMB:::MakeADFunObject(...) 5. └─RTMB:::.MakeTape(mapfunc, obj$env$par) 6. └─RTMB (local) f(x) 7. └─dsem (local) func(pl) 8. └─dsem (local) f(p, ...) 9. └─RTMB::dgmrf(...) 10. └─RTMB::Ops.advector(as.vector(x), as.vector(mu)) 11. ├─RTMB:::Arith2(advector(e1), advector(e2), .Generic) 12. └─RTMB::advector(e2) ── Error ('test-platform.R:135:3'): dsem works with fixed variances ─────────── Error in `advector(e2)`: Invalid argument to 'advector' (lost class attribute?) Backtrace: ▆ 1. └─dsem::dsemRTMB(...) at test-platform.R:135:3 2. └─RTMB::MakeADFun(...) 3. └─obj$retape() 4. └─RTMB:::MakeADFunObject(...) 5. └─RTMB:::.MakeTape(mapfunc, obj$env$par) 6. └─RTMB (local) f(x) 7. └─dsem (local) func(pl) 8. └─dsem (local) f(p, ...) 9. └─RTMB::dgmrf(...) 10. └─RTMB::Ops.advector(as.vector(x), as.vector(mu)) 11. ├─RTMB:::Arith2(advector(e1), advector(e2), .Generic) 12. └─RTMB::advector(e2) ── Error ('test-platform.R:202:3'): Fixing parameters works ─────────────────── Error in `advector(e2)`: Invalid argument to 'advector' (lost class attribute?) Backtrace: ▆ 1. └─dsem::dsemRTMB(sem = sem, tsdata = tsdata, control = dsem_control(getsd = FALSE)) at test-platform.R:202:3 2. └─RTMB::MakeADFun(...) 3. └─obj$retape() 4. └─RTMB:::MakeADFunObject(...) 5. └─RTMB:::.MakeTape(mapfunc, obj$env$par) 6. └─RTMB (local) f(x) 7. └─dsem (local) func(pl) 8. └─dsem (local) f(p, ...) 9. └─RTMB::dgmrf(...) 10. └─RTMB::Ops.advector(as.vector(x), as.vector(mu)) 11. ├─RTMB:::Arith2(advector(e1), advector(e2), .Generic) 12. └─RTMB::advector(e2) ── Error ('test-priors.R:43:3'): priors interface is working ────────────────── Error in `advector(e2)`: Invalid argument to 'advector' (lost class attribute?) Backtrace: ▆ 1. └─dsem::dsemRTMB(...) at test-priors.R:43:3 2. └─RTMB::MakeADFun(...) 3. └─obj$retape() 4. └─RTMB:::MakeADFunObject(...) 5. └─RTMB:::.MakeTape(mapfunc, obj$env$par) 6. └─RTMB (local) f(x) 7. └─dsem (local) func(pl) 8. └─dsem (local) f(p, ...) 9. └─RTMB::dgmrf(...) 10. └─RTMB::Ops.advector(as.vector(x), as.vector(mu)) 11. ├─RTMB:::Arith2(advector(e1), advector(e2), .Generic) 12. └─RTMB::advector(e2) [ FAIL 7 | WARN 10 | SKIP 0 | PASS 4 ] Error: Test failures Execution halted Flavor: r-oldrel-macos-x86_64

Version: 1.6.0
Check: tests
Result: ERROR Running 'testthat.R' [18s] Running the tests in 'tests/testthat.R' failed. Complete output: > > > library(testthat) > library(dsem) > > # Run tests > testthat::test_check("dsem") Read 4 records Coefficient_name Number_of_coefficients Type 1 beta_z 6 Fixed 2 mu_j 2 Random Read 4 records Coefficient_name Number_of_coefficients Type 1 beta_z 6 Fixed 2 mu_j 2 Random 3 x_tj 200 Random Read 4 records Read 5 records Coefficient_name Number_of_coefficients Type 1 beta_z 7 Fixed 2 delta0_j 2 Fixed 3 lnsigma_j 2 Fixed 4 mu_j 2 Random 5 x_tj 122 Random Read 5 records Coefficient_name Number_of_coefficients Type 1 beta_z 7 Fixed 2 delta0_j 2 Fixed 3 mu_j 2 Random 4 x_tj 122 Random Read 5 records Coefficient_name Number_of_coefficients Type 1 beta_z 7 Fixed 2 delta0_j 2 Fixed 3 mu_j 2 Random 4 x_tj 122 Random Read 5 records Coefficient_name Number_of_coefficients Type 1 beta_z 6 Fixed 2 delta0_j 2 Fixed 3 mu_j 2 Random Read 4 records Coefficient_name Number_of_coefficients Type 1 beta_z 6 Fixed 2 delta0_j 2 Fixed 3 mu_j 2 Random Read 4 records Coefficient_name Number_of_coefficients Type 1 beta_z 6 Fixed 2 mu_j 2 Random Read 4 records Coefficient_name Number_of_coefficients Type 1 beta_z 6 Fixed 2 delta0_j 2 Fixed 3 mu_j 2 Random Read 10 records Coefficient_name Number_of_coefficients Type 1 beta_z 17 Fixed 2 mu_j 8 Random Read 10 records Read 0 records Coefficient_name Number_of_coefficients Type 1 beta_z 2 Fixed 2 mu_j 2 Random Read 2 records Coefficient_name Number_of_coefficients Type 1 beta_z 2 Fixed 2 mu_j 2 Random Read 4 records Coefficient_name Number_of_coefficients Type 1 beta_z 4 Fixed 2 mu_j 2 Random Read 4 records Coefficient_name Number_of_coefficients Type 1 lnsigma_j 2 Fixed 2 mu_j 2 Random 3 x_tj 122 Random Read 4 records Read 16 records Coefficient_name Number_of_coefficients Type 1 beta_z 24 Fixed 2 mu_j 8 Fixed 3 x_tj 232 Random Read 4 records Coefficient_name Number_of_coefficients Type 1 beta_z 5 Fixed 2 mu_j 4 Random Read 4 records Read 16 records [ FAIL 7 | WARN 10 | SKIP 0 | PASS 4 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-distributions.R:35:3'): dsem example is working ─────────────── Error in `advector(e2)`: Invalid argument to 'advector' (lost class attribute?) Backtrace: ▆ 1. └─dsem::dsemRTMB(...) at test-distributions.R:35:3 2. └─RTMB::MakeADFun(...) 3. └─obj$retape() 4. └─RTMB:::MakeADFunObject(...) 5. └─RTMB:::.MakeTape(mapfunc, obj$env$par) 6. └─RTMB (local) f(x) 7. └─dsem (local) func(pl) 8. └─dsem (local) f(p, ...) 9. └─RTMB::dgmrf(...) 10. └─RTMB::Ops.advector(as.vector(x), as.vector(mu)) 11. ├─RTMB:::Arith2(advector(e1), advector(e2), .Generic) 12. └─RTMB::advector(e2) ── Failure ('test-gmrf-versions.R:75:3'): dsem constant-variance options ────── apply(margvar, MARGIN = 2, FUN = sd) not equal to c(0, 0). 2/2 mismatches (average diff: NaN) [1] NA - 0 == NA [2] NA - 0 == NA ── Failure ('test-gmrf-versions.R:94:3'): dsem constant-variance options ────── apply(margvar, MARGIN = 2, FUN = sd) not equal to c(0, 0). 2/2 mismatches (average diff: NaN) [1] NA - 0 == NA [2] NA - 0 == NA ── Error ('test-platform.R:34:3'): dsem example is working ──────────────────── Error in `advector(e2)`: Invalid argument to 'advector' (lost class attribute?) Backtrace: ▆ 1. └─dsem::dsemRTMB(sem = sem, tsdata = tsdata, control = dsem_control(getsd = FALSE)) at test-platform.R:34:3 2. └─RTMB::MakeADFun(...) 3. └─obj$retape() 4. └─RTMB:::MakeADFunObject(...) 5. └─RTMB:::.MakeTape(mapfunc, obj$env$par) 6. └─RTMB (local) f(x) 7. └─dsem (local) func(pl) 8. └─dsem (local) f(p, ...) 9. └─RTMB::dgmrf(...) 10. └─RTMB::Ops.advector(as.vector(x), as.vector(mu)) 11. ├─RTMB:::Arith2(advector(e1), advector(e2), .Generic) 12. └─RTMB::advector(e2) ── Error ('test-platform.R:135:3'): dsem works with fixed variances ─────────── Error in `advector(e2)`: Invalid argument to 'advector' (lost class attribute?) Backtrace: ▆ 1. └─dsem::dsemRTMB(...) at test-platform.R:135:3 2. └─RTMB::MakeADFun(...) 3. └─obj$retape() 4. └─RTMB:::MakeADFunObject(...) 5. └─RTMB:::.MakeTape(mapfunc, obj$env$par) 6. └─RTMB (local) f(x) 7. └─dsem (local) func(pl) 8. └─dsem (local) f(p, ...) 9. └─RTMB::dgmrf(...) 10. └─RTMB::Ops.advector(as.vector(x), as.vector(mu)) 11. ├─RTMB:::Arith2(advector(e1), advector(e2), .Generic) 12. └─RTMB::advector(e2) ── Error ('test-platform.R:202:3'): Fixing parameters works ─────────────────── Error in `advector(e2)`: Invalid argument to 'advector' (lost class attribute?) Backtrace: ▆ 1. └─dsem::dsemRTMB(sem = sem, tsdata = tsdata, control = dsem_control(getsd = FALSE)) at test-platform.R:202:3 2. └─RTMB::MakeADFun(...) 3. └─obj$retape() 4. └─RTMB:::MakeADFunObject(...) 5. └─RTMB:::.MakeTape(mapfunc, obj$env$par) 6. └─RTMB (local) f(x) 7. └─dsem (local) func(pl) 8. └─dsem (local) f(p, ...) 9. └─RTMB::dgmrf(...) 10. └─RTMB::Ops.advector(as.vector(x), as.vector(mu)) 11. ├─RTMB:::Arith2(advector(e1), advector(e2), .Generic) 12. └─RTMB::advector(e2) ── Error ('test-priors.R:43:3'): priors interface is working ────────────────── Error in `advector(e2)`: Invalid argument to 'advector' (lost class attribute?) Backtrace: ▆ 1. └─dsem::dsemRTMB(...) at test-priors.R:43:3 2. └─RTMB::MakeADFun(...) 3. └─obj$retape() 4. └─RTMB:::MakeADFunObject(...) 5. └─RTMB:::.MakeTape(mapfunc, obj$env$par) 6. └─RTMB (local) f(x) 7. └─dsem (local) func(pl) 8. └─dsem (local) f(p, ...) 9. └─RTMB::dgmrf(...) 10. └─RTMB::Ops.advector(as.vector(x), as.vector(mu)) 11. ├─RTMB:::Arith2(advector(e1), advector(e2), .Generic) 12. └─RTMB::advector(e2) [ FAIL 7 | WARN 10 | SKIP 0 | PASS 4 ] Error: Test failures Execution halted Flavor: r-oldrel-windows-x86_64

Package ecostate

Current CRAN status: OK: 14

Package phylosem

Current CRAN status: NOTE: 5, OK: 10

Version: 1.1.4
Check: re-building of vignette outputs
Result: NOTE Note: skipping ‘fisheries.Rmd’ due to unavailable dependencies: 'phylosignal' Flavor: r-devel-macos-x86_64

Version: 1.1.4
Check: installed package size
Result: NOTE installed size is 62.9Mb sub-directories of 1Mb or more: libs 62.1Mb Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64

Package tinyVAST

Current CRAN status: ERROR: 1, NOTE: 6, OK: 8

Version: 1.0.1
Check: tests
Result: ERROR Running ‘testthat.R’ [6s/5s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > > > library(testthat) > library(tinyVAST) > > # Run tests > testthat::test_check("tinyVAST") Starting 2 test processes Error in `private$handle_error()`: ! testthat subprocess failed to start, stderr: Error: package or namespace load failed for 'tinyVAST' in ans[ypos] <- rep(yes, length.out = len)[ypos]: Value of SET_STRING_ELT() must be a 'CHARSXP' not a 'character' Caused by error: ! R session crashed with exit code 1 Backtrace: ▆ 1. └─testthat::test_check("tinyVAST") 2. └─testthat::test_dir(...) 3. └─testthat:::test_files(...) 4. └─testthat:::test_files_parallel(...) 5. ├─withr::with_dir(...) 6. │ └─base::force(code) 7. ├─testthat::with_reporter(...) 8. │ └─base::tryCatch(...) 9. │ └─base (local) tryCatchList(expr, classes, parentenv, handlers) 10. │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) 11. │ └─base (local) doTryCatch(return(expr), name, parentenv, handler) 12. └─testthat:::parallel_event_loop_chunky(queue, reporters, ".") 13. └─queue$poll(Inf) 14. └─base::lapply(...) 15. └─testthat (local) FUN(X[[i]], ...) 16. └─private$handle_error(msg, i) 17. └─rlang::abort(...) Execution halted Flavor: r-devel-linux-x86_64-debian-gcc

Version: 1.0.1
Check: installed package size
Result: NOTE installed size is 95.8Mb sub-directories of 1Mb or more: data 2.3Mb libs 92.5Mb Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64