Last updated on 2025-12-04 09:50:22 CET.
| Package | ERROR | NOTE | OK |
|---|---|---|---|
| ABCoptim | 13 | ||
| aphylo | 13 | ||
| barry | 11 | ||
| epiworldR | 4 | 3 | 6 |
| fmcmc | 2 | 11 | |
| googlePublicData | 2 | 11 | |
| netplot | 13 | ||
| rgexf | 2 | 11 | |
| slurmR | 2 | 11 |
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: OK: 11
Current CRAN status: ERROR: 4, NOTE: 3, OK: 6
Version: 0.10.0.0
Check: tests
Result: ERROR
Running ‘tinytest.R’ [46s/55s]
Running the tests in ‘tests/tinytest.R’ failed.
Complete output:
>
> if (requireNamespace("tinytest", quietly = TRUE)) {
+
+ test_tmat_matches_expected <- function(tmat) {
+ # Check for out of bounds values
+ tinytest::expect_false(any(tmat < 0))
+ tinytest::expect_false(any(tmat > 1))
+ }
+
+ tinytest::test_package("epiworldR")
+ }
Thank you for using epiworldR! Please consider citing it in your work.
You can find the citation information by running
citation("epiworldR")
test-agents-and-dist-virus-tool.R 0 tests
test-agents-and-dist-virus-tool.R 0 tests _________________________________________________________________________
Running the model...
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| done.
test-agents-and-dist-virus-tool.R 0 tests
test-agents-and-dist-virus-tool.R 0 tests
test-agents-and-dist-virus-tool.R 1 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 1 tests <1b>[0;32mOK<1b>[0m Starting multiple runs (100) using 2 thread(s)
_________________________________________________________________________
_________________________________________________________________________
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| done.
test-agents-and-dist-virus-tool.R 1 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 1 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 1 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 1 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 2 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 2 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 2 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 2 tests <1b>[0;32mOK<1b>[0m _________________________________________________________________________
Running the model...
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| done.
test-agents-and-dist-virus-tool.R 2 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 2 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 3 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 4 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 4 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 4 tests <1b>[0;32mOK<1b>[0m Starting multiple runs (100) using 2 thread(s)
_________________________________________________________________________
_________________________________________________________________________
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| done.
test-agents-and-dist-virus-tool.R 4 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 4 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 4 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 5 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 5 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 5 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 5 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 5 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 5 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 5 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 5 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 5 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 5 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 5 tests <1b>[0;32mOK<1b>[0m _________________________________________________________________________
Running the model...
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| done.
test-agents-and-dist-virus-tool.R 5 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 5 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 6 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 6 tests <1b>[0;32mOK<1b>[0m Starting multiple runs (100) using 2 thread(s)
_________________________________________________________________________
_________________________________________________________________________
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| done.
test-agents-and-dist-virus-tool.R 6 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 6 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 6 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 6 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 7 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 7 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 7 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 7 tests <1b>[0;32mOK<1b>[0m _________________________________________________________________________
Running the model...
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| done.
test-agents-and-dist-virus-tool.R 7 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 7 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 8 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 9 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 9 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 9 tests <1b>[0;32mOK<1b>[0m Starting multiple runs (100) using 2 thread(s)
_________________________________________________________________________
_________________________________________________________________________
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| done.
test-agents-and-dist-virus-tool.R 9 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 9 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 9 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 10 tests <1b>[0;32mOK<1b>[0m <1b>[0;34m5.7s<1b>[0m
test-diffnet.R................ 0 tests
test-diffnet.R................ 0 tests
test-diffnet.R................ 0 tests
test-diffnet.R................ 0 tests
test-diffnet.R................ 0 tests
test-diffnet.R................ 0 tests
test-diffnet.R................ 0 tests
test-diffnet.R................ 1 tests <1b>[0;32mOK<1b>[0m
test-diffnet.R................ 2 tests <1b>[0;32mOK<1b>[0m
test-diffnet.R................ 3 tests <1b>[0;32mOK<1b>[0m
test-diffnet.R................ 4 tests <1b>[0;32mOK<1b>[0m
test-diffnet.R................ 4 tests <1b>[0;32mOK<1b>[0m
test-diffnet.R................ 4 tests <1b>[0;32mOK<1b>[0m
test-diffnet.R................ 4 tests <1b>[0;32mOK<1b>[0m
test-diffnet.R................ 4 tests <1b>[0;32mOK<1b>[0m
test-diffnet.R................ 4 tests <1b>[0;32mOK<1b>[0m
test-diffnet.R................ 4 tests <1b>[0;32mOK<1b>[0m
test-diffnet.R................ 4 tests <1b>[0;32mOK<1b>[0m
test-diffnet.R................ 4 tests <1b>[0;32mOK<1b>[0m
test-diffnet.R................ 4 tests <1b>[0;32mOK<1b>[0m
test-diffnet.R................ 4 tests <1b>[0;32mOK<1b>[0m
test-diffnet.R................ 4 tests <1b>[0;32mOK<1b>[0m
test-diffnet.R................ 4 tests <1b>[0;32mOK<1b>[0m
test-diffnet.R................ 4 tests <1b>[0;32mOK<1b>[0m
test-diffnet.R................ 4 tests <1b>[0;32mOK<1b>[0m
test-diffnet.R................ 5 tests <1b>[0;32mOK<1b>[0m
test-diffnet.R................ 6 tests <1b>[0;32mOK<1b>[0m
test-diffnet.R................ 7 tests <1b>[0;32mOK<1b>[0m
test-diffnet.R................ 8 tests <1b>[0;32mOK<1b>[0m
test-diffnet.R................ 9 tests <1b>[0;32mOK<1b>[0m
test-diffnet.R................ 10 tests <1b>[0;32mOK<1b>[0m
test-diffnet.R................ 11 tests <1b>[0;32mOK<1b>[0m
test-diffnet.R................ 12 tests <1b>[0;32mOK<1b>[0m <1b>[0;36m13ms<1b>[0m
test-get.R.................... 0 tests
test-get.R.................... 0 tests
test-get.R.................... 1 tests <1b>[0;32mOK<1b>[0m
test-get.R.................... 2 tests <1b>[0;32mOK<1b>[0m
test-get.R.................... 3 tests <1b>[0;32mOK<1b>[0m
test-get.R.................... 4 tests <1b>[0;32mOK<1b>[0m
test-get.R.................... 5 tests <1b>[0;32mOK<1b>[0m
test-get.R.................... 6 tests <1b>[0;32mOK<1b>[0m
test-get.R.................... 6 tests <1b>[0;32mOK<1b>[0m <1b>[0;36m14ms<1b>[0m
test-lfmcmc.R................. 0 tests
test-lfmcmc.R................. 0 tests
test-lfmcmc.R................. 0 tests
test-lfmcmc.R................. 0 tests
test-lfmcmc.R................. 0 tests
test-lfmcmc.R................. 1 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 2 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 3 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 4 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 5 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 5 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 6 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 6 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 6 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 6 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 6 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 7 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 8 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 9 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 10 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 10 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 10 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 10 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 11 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 12 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 13 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 14 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 15 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 16 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 17 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 18 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 19 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 20 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 21 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 22 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 22 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 23 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 24 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 25 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 26 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 26 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 27 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 28 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 29 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 30 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 31 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 32 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 33 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 34 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 35 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 36 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 37 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 38 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 39 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 39 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 40 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 40 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 40 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 40 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 41 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 42 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 43 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 44 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 45 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 46 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 47 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 47 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 47 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 47 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 47 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 47 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 48 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 49 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 50 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 51 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 52 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 52 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 52 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 52 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 52 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 52 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 52 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 52 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 52 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 52 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 52 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 52 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 53 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 53 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 53 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 54 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 55 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 56 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 57 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 58 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 59 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 60 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 61 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 62 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 63 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 64 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 65 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 66 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 67 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 68 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 69 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 70 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 71 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 72 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 73 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 74 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 75 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 76 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 77 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 78 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 79 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 80 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 81 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 82 tests <1b>[0;32mOK<1b>[0m <1b>[0;34m31.0s<1b>[0m
test-measles-quarantine-errors.R 0 tests
test-measles-quarantine-errors.R 1 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 2 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 2 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 3 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 4 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 5 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 6 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 7 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 8 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 9 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 9 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 9 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 9 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 9 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 9 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 10 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 11 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 12 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 13 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 14 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 15 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 16 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 17 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 18 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 19 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 20 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 21 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 22 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 23 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 24 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 25 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 26 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 27 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 28 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 29 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 30 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 31 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 32 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 33 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 34 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 35 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 36 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 37 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 38 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 39 tests <1b>[0;32mOK<1b>[0m <1b>[0;36m78ms<1b>[0m
test-measles-quarantine-math.R 0 tests Starting multiple runs (200) using 2 thread(s)
_________________________________________________________________________
_________________________________________________________________________
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| done.
----- PASSED : test-measles-quarantine-math.R<4--39>
call| expect_equal(r0_obs, R0, tolerance = 0.1)
Starting multiple runs (200) using 2 thread(s)
_________________________________________________________________________
_________________________________________________________________________
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| done.
----- PASSED : test-measles-quarantine-math.R<4--39>
call| expect_equal(r0_obs, R0, tolerance = 0.1)
Starting multiple runs (200) using 2 thread(s)
_________________________________________________________________________
_________________________________________________________________________
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| done.
----- PASSED : test-measles-quarantine-math.R<4--39>
call| expect_equal(r0_obs, R0, tolerance = 0.1)
test-measles-quarantine-math.R 3 tests <1b>[0;32mOK<1b>[0m <1b>[0;34m6.2s<1b>[0m
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests _________________________________________________________________________
Running the model...
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| done.
test-measlesmixing.R.......... 0 tests ________________________________________________________________________________
________________________________________________________________________________
SIMULATION STUDY
Name of the model : Measles with Mixing and Quarantine
Population size : 9000
Agents' data : (none)
Number of entities : 3
Days (duration) : 100 (of 100)
Number of viruses : 1
Last run elapsed t : 241.00ms
Last run speed : 3.73 million agents x day / second
Rewiring : off
Global events:
- Update infected individuals (runs daily)
Virus(es):
- Measles
Tool(s):
- Vaccine
Model parameters:
- (IGNORED) Vax improved recovery : 0.8000
- Contact rate : 15.0000
- Contact tracing days prior : 4.0000
- Contact tracing success rate : 0.8000
- Days undetected : 2.0000
- Hospitalization period : 10.0000
- Hospitalization rate : 0.1000
- Incubation period : 10.0000
- Isolation period : 10.0000
- Isolation willingness : 0.8000
- Prodromal period : 3.0000
- Quarantine period : 14.0000
- Quarantine willingness : 0.9000
- Rash period : 7.0000
- Transmission rate : 0.9000
- Vaccination rate : 0.9500
- Vax efficacy : 0.9700
Distribution of the population at time 100:
- ( 0) Susceptible : 8999 -> 8999
- ( 1) Exposed : 1 -> 0
- ( 2) Prodromal : 0 -> 0
- ( 3) Rash : 0 -> 0
- ( 4) Isolated : 0 -> 0
- ( 5) Isolated Recovered : 0 -> 0
- ( 6) Detected Hospitalized : 0 -> 0
- ( 7) Quarantined Exposed : 0 -> 0
- ( 8) Quarantined Susceptible : 0 -> 0
- ( 9) Quarantined Prodromal : 0 -> 0
- (10) Quarantined Recovered : 0 -> 0
- (11) Hospitalized : 0 -> 0
- (12) Recovered : 0 -> 1
Transition Probabilities:
- Susceptible 1.00 0.00 - - - - - - - - - - -
- Exposed - 0.96 0.04 - - - - - - - - - -
- Prodromal - - - 1.00 - - - - - - - - -
- Rash - - - - - 1.00 - - - - - - -
- Isolated - - - - - - - - - - - - -
- Isolated Recovered - - - - - 0.89 - - - - - - 0.11
- Detected Hospitalized - - - - - - - - - - - - -
- Quarantined Exposed - - - - - - - - - - - - -
- Quarantined Susceptible - - - - - - - - - - - - -
- Quarantined Prodromal - - - - - - - - - - - - -
- Quarantined Recovered - - - - - - - - - - - - -
- Hospitalized - - - - - - - - - - - - -
- Recovered - - - - - - - - - - - - 1.00
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 1 tests <1b>[0;32mOK<1b>[0m
test-measlesmixing.R.......... 2 tests <1b>[0;32mOK<1b>[0m
test-measlesmixing.R.......... 3 tests <1b>[0;32mOK<1b>[0m
test-measlesmixing.R.......... 4 tests <1b>[0;32mOK<1b>[0m
test-measlesmixing.R.......... 5 tests <1b>[0;32mOK<1b>[0m
test-measlesmixing.R.......... 6 tests <1b>[0;32mOK<1b>[0m
test-measlesmixing.R.......... 7 tests <1b>[0;32mOK<1b>[0m
test-measlesmixing.R.......... 8 tests <1b>[0;32mOK<1b>[0m <1b>[0;34m0.3s<1b>[0m
test-measlesmixingriskquarantine-multiple.R 0 tests
test-measlesmixingriskquarantine-multiple.R 0 tests
test-measlesmixingriskquarantine-multiple.R 0 tests
test-measlesmixingriskquarantine-multiple.R 0 tests
test-measlesmixingriskquarantine-multiple.R 0 tests
test-measlesmixingriskquarantine-multiple.R 0 tests
test-measlesmixingriskquarantine-multiple.R 0 tests
test-measlesmixingriskquarantine-multiple.R 0 tests
test-measlesmixingriskquarantine-multiple.R 0 tests
test-measlesmixingriskquarantine-multiple.R 0 tests Starting multiple runs (50) using 2 thread(s)
_________________________________________________________________________
_________________________________________________________________________
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| done.
test-measlesmixingriskquarantine-multiple.R 0 tests Starting multiple runs (50) using 2 thread(s)
_________________________________________________________________________
_________________________________________________________________________
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| done.
test-measlesmixingriskquarantine-multiple.R 0 tests Starting multiple runs (50) using 2 thread(s)
_________________________________________________________________________
_________________________________________________________________________
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| done.
test-measlesmixingriskquarantine-multiple.R 0 tests Starting multiple runs (50) using 2 thread(s)
_________________________________________________________________________
_________________________________________________________________________
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| done.
test-measlesmixingriskquarantine-multiple.R 0 tests Starting multiple runs (50) using 2 thread(s)
_________________________________________________________________________
_________________________________________________________________________
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| done.
test-measlesmixingriskquarantine-multiple.R 0 tests
test-measlesmixingriskquarantine-multiple.R 1 tests <1b>[0;32mOK<1b>[0m
test-measlesmixingriskquarantine-multiple.R 2 tests <1b>[0;32mOK<1b>[0m
test-measlesmixingriskquarantine-multiple.R 3 tests <1b>[0;32mOK<1b>[0m
test-measlesmixingriskquarantine-multiple.R 4 tests <1b>[0;32mOK<1b>[0m
test-measlesmixingriskquarantine-multiple.R 5 tests <1b>[0;32mOK<1b>[0m
test-measlesmixingriskquarantine-multiple.R 6 tests <1b>[0;32mOK<1b>[0m
test-measlesmixingriskquarantine-multiple.R 7 tests <1b>[0;32mOK<1b>[0m <1b>[0;34m2.2s<1b>[0m
test-measlesmixingriskquarantine.R 0 tests
test-measlesmixingriskquarantine.R 0 tests
test-measlesmixingriskquarantine.R 0 tests
test-measlesmixingriskquarantine.R 0 tests
test-measlesmixingriskquarantine.R 0 tests
test-measlesmixingriskquarantine.R 0 tests
test-measlesmixingriskquarantine.R 0 tests
test-measlesmixingriskquarantine.R 0 tests _________________________________________________________________________
Running the model...
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| done.
test-measlesmixingriskquarantine.R 0 tests ________________________________________________________________________________
________________________________________________________________________________
SIMULATION STUDY
Name of the model : Measles with Mixing and Risk-based Quarantine
Population size : 9000
Agents' data : (none)
Number of entities : 3
Days (duration) : 100 (of 100)
Number of viruses : 1
Last run elapsed t : 213.00ms
Last run speed : 4.22 million agents x day / second
Rewiring : off
Global events:
- Update infected individuals (runs daily)
Virus(es):
- Measles
Tool(s):
- Vaccine
Model parameters:
- Contact rate : 15.0000
- Contact tracing days prior : 4.0000
- Contact tracing success rate : 0.8000
- Days undetected : 2.0000
- Detection rate quarantine : 0.5000
- Hospitalization period : 10.0000
- Hospitalization rate : 0.1000
- Incubation period : 10.0000
- Isolation period : 10.0000
- Isolation willingness : 0.8000
- Prodromal period : 3.0000
- Quarantine period high : 21.0000
- Quarantine period low : 7.0000
- Quarantine period medium : 14.0000
- Quarantine willingness : 0.9000
- Rash period : 7.0000
- Transmission rate : 0.9000
- Vaccination rate : 0.9500
- Vax efficacy : 0.9700
Distribution of the population at time 100:
- ( 0) Susceptible : 8999 -> 8999
- ( 1) Exposed : 1 -> 0
- ( 2) Prodromal : 0 -> 0
- ( 3) Rash : 0 -> 0
- ( 4) Isolated : 0 -> 0
- ( 5) Isolated Recovered : 0 -> 0
- ( 6) Detected Hospitalized : 0 -> 0
- ( 7) Quarantined Exposed : 0 -> 0
- ( 8) Quarantined Susceptible : 0 -> 0
- ( 9) Quarantined Prodromal : 0 -> 0
- (10) Quarantined Recovered : 0 -> 0
- (11) Hospitalized : 0 -> 0
- (12) Recovered : 0 -> 1
Transition Probabilities:
- Susceptible 1.00 0.00 - - - - - - 0.00 - - - -
- Exposed - 0.96 0.04 - - - - - - - - - -
- Prodromal - - - 1.00 - - - - - - - - -
- Rash - - - - - 1.00 - - - - - - -
- Isolated - - - - - - - - - - - - -
- Isolated Recovered - - - - - 0.89 - - - - - - 0.11
- Detected Hospitalized - - - - - - - - - - - - -
- Quarantined Exposed - - - - - - - - - - - - -
- Quarantined Susceptible 0.09 - - - - - - - 0.91 - - - -
- Quarantined Prodromal - - - - - - - - - - - - -
- Quarantined Recovered - - - - - - - - - - - - -
- Hospitalized - - - - - - - - - - - - -
- Recovered - - - - - - - - - - - - 1.00
test-measlesmixingriskquarantine.R 0 tests
test-measlesmixingriskquarantine.R 0 tests
test-measlesmixingriskquarantine.R 0 tests
test-measlesmixingriskquarantine.R 0 tests
test-measlesmixingriskquarantine.R 0 tests
test-measlesmixingriskquarantine.R 0 tests
test-measlesmixingriskquarantine.R 0 tests
test-measlesmixingriskquarantine.R 0 tests
test-measlesmixingriskquarantine.R 0 tests
test-measlesmixingriskquarantine.R 0 tests
test-measlesmixingriskquarantine.R 0 tests
test-measlesmixingriskquarantine.R 0 tests
test-measlesmixingriskquarantine.R 0 tests
test-measlesmixingriskquarantine.R 0 tests
test-measlesmixingriskquarantine.R 0 tests
test-measlesmixingriskquarantine.R 0 tests
test-measlesmixingriskquarantine.R 1 tests <1b>[0;32mOK<1b>[0m
test-measlesmixingriskquarantine.R 2 tests <1b>[0;32mOK<1b>[0m
test-measlesmixingriskquarantine.R 3 tests <1b>[0;32mOK<1b>[0m
test-measlesmixingriskquarantine.R 4 tests <1b>[0;32mOK<1b>[0m
test-measlesmixingriskquarantine.R 5 tests <1b>[0;32mOK<1b>[0m
test-measlesmixingriskquarantine.R 6 tests <1b>[0;32mOK<1b>[0m
test-measlesmixingriskquarantine.R 7 tests <1b>[0;32mOK<1b>[0m
test-measlesmixingriskquarantine.R 8 tests <1b>[0;32mOK<1b>[0m
test-measlesmixingriskquarantine.R 9 tests <1b>[0;32mOK<1b>[0m
test-measlesmixingriskquarantine.R 10 tests <1b>[0;32mOK<1b>[0m
test-measlesmixingriskquarantine.R 11 tests <1b>[0;32mOK<1b>[0m
test-measlesmixingriskquarantine.R 12 tests <1b>[0;32mOK<1b>[0m
test-measlesmixingriskquarantine.R 13 tests <1b>[0;32mOK<1b>[0m
test-measlesmixingriskquarantine.R 14 tests <1b>[0;32mOK<1b>[0m
test-measlesmixingriskquarantine.R 15 tests <1b>[0;32mOK<1b>[0m
test-measlesmixingriskquarantine.R 16 tests <1b>[0;32mOK<1b>[0m
test-measlesmixingriskquarantine.R 17 tests <1b>[0;32mOK<1b>[0m
test-measlesmixingriskquarantine.R 18 tests <1b>[0;32mOK<1b>[0m
test-measlesmixingriskquarantine.R 19 tests <1b>[0;32mOK<1b>[0m
test-measlesmixingriskquarantine.R 20 tests <1b>[0;32mOK<1b>[0m
test-measlesmixingriskquarantine.R 21 tests <1b>[0;32mOK<1b>[0m
test-measlesmixingriskquarantine.R 22 tests <1b>[0;32mOK<1b>[0m
test-measlesmixingriskquarantine.R 23 tests <1b>[0;32mOK<1b>[0m
test-measlesmixingriskquarantine.R 24 tests <1b>[0;32mOK<1b>[0m
test-measlesmixingriskquarantine.R 25 tests <1b>[0;32mOK<1b>[0m
test-measlesmixingriskquarantine.R 26 tests <1b>[0;32mOK<1b>[0m <1b>[0;34m0.3s<1b>[0m
test-model-diagram.R.......... 0 tests
test-model-diagram.R.......... 0 tests
test-model-diagram.R.......... 0 tests
test-model-diagram.R.......... 0 tests
test-model-diagram.R.......... 1 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 2 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 3 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 4 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 5 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 6 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 7 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 8 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 9 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 10 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 11 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 12 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 12 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 13 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 14 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 15 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 16 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 17 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 18 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 18 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 19 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 19 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 20 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 21 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 22 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 23 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 24 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 25 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 25 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 26 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 27 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 28 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 29 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 30 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 31 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 31 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 32 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 32 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 33 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 34 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 35 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 36 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 37 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 38 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 39 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 40 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 41 tests <1b>[0;32mOK<1b>[0m <1b>[0;34m0.1s<1b>[0m
test-model-methods.R.......... 0 tests
test-model-methods.R.......... 0 tests
test-model-methods.R.......... 0 tests
test-model-methods.R.......... 1 tests <1b>[0;32mOK<1b>[0m
test-model-methods.R.......... 2 tests <1b>[0;32mOK<1b>[0m
test-model-methods.R.......... 3 tests <1b>[0;31m1 fails<1b>[0m
test-model-methods.R.......... 4 tests <1b>[0;31m2 fails<1b>[0m
test-model-methods.R.......... 4 tests <1b>[0;31m2 fails<1b>[0m
test-model-methods.R.......... 5 tests <1b>[0;31m2 fails<1b>[0m
test-model-methods.R.......... 6 tests <1b>[0;31m2 fails<1b>[0m
test-model-methods.R.......... 7 tests <1b>[0;31m2 fails<1b>[0m
test-model-methods.R.......... 8 tests <1b>[0;31m2 fails<1b>[0m
test-model-methods.R.......... 9 tests <1b>[0;31m2 fails<1b>[0m <1b>[0;36m80ms<1b>[0m
test-multiple.R............... 0 tests
test-multiple.R............... 0 tests
test-multiple.R............... 0 tests
test-multiple.R............... 0 tests _________________________________________________________________________
|Running the model...
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| done.
|
test-multiple.R............... 0 tests
test-multiple.R............... 0 tests Starting multiple runs (50) using 2 thread(s)
_________________________________________________________________________
_________________________________________________________________________
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| done.
test-multiple.R............... 0 tests
test-multiple.R............... 0 tests
test-multiple.R............... 0 tests
test-multiple.R............... 0 tests
test-multiple.R............... 0 tests
test-multiple.R............... 1 tests <1b>[0;32mOK<1b>[0m
test-multiple.R............... 2 tests <1b>[0;32mOK<1b>[0m <1b>[0;34m5.2s<1b>[0m
test-seir.R................... 1 tests <1b>[0;32mOK<1b>[0m
test-seir.R................... 2 tests <1b>[0;32mOK<1b>[0m
test-seir.R................... 3 tests <1b>[0;32mOK<1b>[0m
test-seir.R................... 4 tests <1b>[0;32mOK<1b>[0m
test-seir.R................... 5 tests <1b>[0;32mOK<1b>[0m
test-seir.R................... 6 tests <1b>[0;32mOK<1b>[0m
test-seir.R................... 7 tests <1b>[0;32mOK<1b>[0m
test-seir.R................... 8 tests <1b>[0;32mOK<1b>[0m
test-seir.R................... 9 tests <1b>[0;32mOK<1b>[0m
test-seir.R................... 10 tests <1b>[0;32mOK<1b>[0m
test-seir.R................... 11 tests <1b>[0;32mOK<1b>[0m
test-seir.R................... 11 tests <1b>[0;32mOK<1b>[0m
test-seir.R................... 12 tests <1b>[0;32mOK<1b>[0m
test-seir.R................... 13 tests <1b>[0;32mOK<1b>[0m
test-seir.R................... 14 tests <1b>[0;32mOK<1b>[0m
test-seir.R................... 15 tests <1b>[0;32mOK<1b>[0m
test-seir.R................... 15 tests <1b>[0;32mOK<1b>[0m
test-seir.R................... 15 tests <1b>[0;32mOK<1b>[0m
test-seir.R................... 15 tests <1b>[0;32mOK<1b>[0m
test-seir.R................... 15 tests <1b>[0;32mOK<1b>[0m
test-seir.R................... 15 tests <1b>[0;32mOK<1b>[0m
test-seir.R................... 15 tests <1b>[0;32mOK<1b>[0m
test-seir.R................... 15 tests <1b>[0;32mOK<1b>[0m
test-seir.R................... 15 tests <1b>[0;32mOK<1b>[0m
test-seir.R................... 15 tests <1b>[0;32mOK<1b>[0m
test-seir.R................... 15 tests <1b>[0;32mOK<1b>[0m
test-seir.R................... 16 tests <1b>[0;32mOK<1b>[0m
test-seir.R................... 17 tests <1b>[0;32mOK<1b>[0m
test-seir.R................... 18 tests <1b>[0;32mOK<1b>[0m
test-seir.R................... 19 tests <1b>[0;32mOK<1b>[0m
test-seir.R................... 20 tests <1b>[0;32mOK<1b>[0m
test-seir.R................... 21 tests <1b>[0;32mOK<1b>[0m
test-seir.R................... 22 tests <1b>[0;32mOK<1b>[0m
test-seir.R................... 23 tests <1b>[0;32mOK<1b>[0m
test-seir.R................... 24 tests <1b>[0;32mOK<1b>[0m
test-seir.R................... 25 tests <1b>[0;32mOK<1b>[0m <1b>[0;36m71ms<1b>[0m
test-seirconn.R............... 0 tests
test-seirconn.R............... 0 tests
test-seirconn.R............... 0 tests
test-seirconn.R............... 0 tests
test-seirconn.R............... 0 tests
test-seirconn.R............... 0 tests
test-seirconn.R............... 0 tests
test-seirconn.R............... 1 tests <1b>[0;32mOK<1b>[0m
test-seirconn.R............... 2 tests <1b>[0;32mOK<1b>[0m
test-seirconn.R............... 3 tests <1b>[0;32mOK<1b>[0m
test-seirconn.R............... 4 tests <1b>[0;32mOK<1b>[0m
test-seirconn.R............... 4 tests <1b>[0;32mOK<1b>[0m
test-seirconn.R............... 4 tests <1b>[0;32mOK<1b>[0m
test-seirconn.R............... 4 tests <1b>[0;32mOK<1b>[0m
test-seirconn.R............... 4 tests <1b>[0;32mOK<1b>[0m
test-seirconn.R............... 4 tests <1b>[0;32mOK<1b>[0m
test-seirconn.R............... 4 tests <1b>[0;32mOK<1b>[0m
test-seirconn.R............... 5 tests <1b>[0;32mOK<1b>[0m
test-seirconn.R............... 6 tests <1b>[0;32mOK<1b>[0m
test-seirconn.R............... 7 tests <1b>[0;32mOK<1b>[0m
test-seirconn.R............... 8 tests <1b>[0;32mOK<1b>[0m
test-seirconn.R............... 9 tests <1b>[0;32mOK<1b>[0m
test-seirconn.R............... 10 tests <1b>[0;32mOK<1b>[0m
test-seirconn.R............... 11 tests <1b>[0;32mOK<1b>[0m
test-seirconn.R............... 12 tests <1b>[0;32mOK<1b>[0m
test-seirconn.R............... 13 tests <1b>[0;32mOK<1b>[0m
test-seirconn.R............... 14 tests <1b>[0;32mOK<1b>[0m
test-seirconn.R............... 15 tests <1b>[0;32mOK<1b>[0m
test-seirconn.R............... 16 tests <1b>[0;32mOK<1b>[0m
test-seirconn.R............... 17 tests <1b>[0;32mOK<1b>[0m
test-seirconn.R............... 18 tests <1b>[0;32mOK<1b>[0m <1b>[0;36m15ms<1b>[0m
test-seird.R.................. 0 tests
test-seird.R.................. 0 tests
test-seird.R.................. 0 tests
test-seird.R.................. 0 tests
test-seird.R.................. 0 tests
test-seird.R.................. 0 tests
test-seird.R.................. 1 tests <1b>[0;32mOK<1b>[0m
test-seird.R.................. 2 tests <1b>[0;32mOK<1b>[0m
test-seird.R.................. 3 tests <1b>[0;32mOK<1b>[0m
test-seird.R.................. 4 tests <1b>[0;32mOK<1b>[0m
test-seird.R.................. 4 tests <1b>[0;32mOK<1b>[0m
test-seird.R.................. 4 tests <1b>[0;32mOK<1b>[0m
test-seird.R.................. 4 tests <1b>[0;32mOK<1b>[0m
test-seird.R.................. 4 tests <1b>[0;32mOK<1b>[0m
test-seird.R.................. 4 tests <1b>[0;32mOK<1b>[0m
test-seird.R.................. 5 tests <1b>[0;32mOK<1b>[0m
test-seird.R.................. 6 tests <1b>[0;32mOK<1b>[0m
test-seird.R.................. 7 tests <1b>[0;32mOK<1b>[0m
test-seird.R.................. 8 tests <1b>[0;32mOK<1b>[0m
test-seird.R.................. 9 tests <1b>[0;32mOK<1b>[0m
test-seird.R.................. 10 tests <1b>[0;32mOK<1b>[0m
test-seird.R.................. 11 tests <1b>[0;32mOK<1b>[0m
test-seird.R.................. 12 tests <1b>[0;32mOK<1b>[0m
test-seird.R.................. 13 tests <1b>[0;32mOK<1b>[0m
test-seird.R.................. 14 tests <1b>[0;32mOK<1b>[0m
test-seird.R.................. 15 tests <1b>[0;32mOK<1b>[0m
test-seird.R.................. 16 tests <1b>[0;32mOK<1b>[0m <1b>[0;36m13ms<1b>[0m
test-seirdconn.R.............. 0 tests
test-seirdconn.R.............. 0 tests
test-seirdconn.R.............. 0 tests
test-seirdconn.R.............. 0 tests
test-seirdconn.R.............. 0 tests
test-seirdconn.R.............. 0 tests
test-seirdconn.R.............. 0 tests
test-seirdconn.R.............. 0 tests
test-seirdconn.R.............. 1 tests <1b>[0;32mOK<1b>[0m
test-seirdconn.R.............. 2 tests <1b>[0;32mOK<1b>[0m
test-seirdconn.R.............. 3 tests <1b>[0;32mOK<1b>[0m
test-seirdconn.R.............. 4 tests <1b>[0;32mOK<1b>[0m
test-seirdconn.R.............. 4 tests <1b>[0;32mOK<1b>[0m
test-seirdconn.R.............. 4 tests <1b>[0;32mOK<1b>[0m
test-seirdconn.R.............. 4 tests <1b>[0;32mOK<1b>[0m
test-seirdconn.R.............. 4 tests <1b>[0;32mOK<1b>[0m
test-seirdconn.R.............. 4 tests <1b>[0;32mOK<1b>[0m
test-seirdconn.R.............. 4 tests <1b>[0;32mOK<1b>[0m
test-seirdconn.R.............. 5 tests <1b>[0;32mOK<1b>[0m
test-seirdconn.R.............. 6 tests <1b>[0;32mOK<1b>[0m
test-seirdconn.R.............. 7 tests <1b>[0;32mOK<1b>[0m
test-seirdconn.R.............. 8 tests <1b>[0;32mOK<1b>[0m
test-seirdconn.R.............. 9 tests <1b>[0;32mOK<1b>[0m
test-seirdconn.R.............. 10 tests <1b>[0;32mOK<1b>[0m
test-seirdconn.R.............. 11 tests <1b>[0;32mOK<1b>[0m
test-seirdconn.R.............. 12 tests <1b>[0;32mOK<1b>[0m
test-seirdconn.R.............. 13 tests <1b>[0;32mOK<1b>[0m
test-seirdconn.R.............. 14 tests <1b>[0;32mOK<1b>[0m
test-seirdconn.R.............. 15 tests <1b>[0;32mOK<1b>[0m
test-seirdconn.R.............. 16 tests <1b>[0;32mOK<1b>[0m
test-seirdconn.R.............. 17 tests <1b>[0;32mOK<1b>[0m
test-seirdconn.R.............. 18 tests <1b>[0;32mOK<1b>[0m
test-seirdconn.R.............. 19 tests <1b>[0;32mOK<1b>[0m
test-seirdconn.R.............. 20 tests <1b>[0;32mOK<1b>[0m <1b>[0;36m22ms<1b>[0m
test-seirmixing.R............. 0 tests
test-seirmixing.R............. 0 tests
test-seirmixing.R............. 0 tests
test-seirmixing.R............. 0 tests
test-seirmixing.R............. 0 tests
test-seirmixing.R............. 0 tests
test-seirmixing.R............. 0 tests
test-seirmixing.R............. 0 tests _________________________________________________________________________
Running the model...
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| done.
test-seirmixing.R............. 0 tests ________________________________________________________________________________
________________________________________________________________________________
SIMULATION STUDY
Name of the model : Susceptible-Exposed-Infected-Removed (SEIR) with Mixing
Population size : 9000
Agents' data : (none)
Number of entities : 3
Days (duration) : 100 (of 100)
Number of viruses : 1
Last run elapsed t : 174.00ms
Last run speed : 5.16 million agents x day / second
Rewiring : off
Global events:
- Update infected individuals (runs daily)
Virus(es):
- Flu
Tool(s):
(none)
Model parameters:
- Avg. Incubation days : 0.0090
- Contact rate : 40.0000
- Prob. Recovery : 0.1000
- Prob. Transmission : 1.0000
Distribution of the population at time 100:
- (0) Susceptible : 8999 -> 6000
- (1) Exposed : 1 -> 0
- (2) Infected : 0 -> 0
- (3) Recovered : 0 -> 3000
Transition Probabilities:
- Susceptible 1.00 0.00 - -
- Exposed - - 1.00 -
- Infected - - 0.90 0.10
- Recovered - - - 1.00
test-seirmixing.R............. 0 tests
test-seirmixing.R............. 0 tests
test-seirmixing.R............. 0 tests
test-seirmixing.R............. 0 tests
test-seirmixing.R............. 0 tests
test-seirmixing.R............. 0 tests
test-seirmixing.R............. 0 tests
test-seirmixing.R............. 0 tests
test-seirmixing.R............. 0 tests
test-seirmixing.R............. 0 tests
test-seirmixing.R............. 0 tests
test-seirmixing.R............. 0 tests
test-seirmixing.R............. 0 tests
test-seirmixing.R............. 0 tests
test-seirmixing.R............. 0 tests
test-seirmixing.R............. 0 tests
test-seirmixing.R............. 0 tests
test-seirmixing.R............. 0 tests
test-seirmixing.R............. 0 tests
test-seirmixing.R............. 0 tests
test-seirmixing.R............. 0 tests
test-seirmixing.R............. 0 tests
test-seirmixing.R............. 0 tests
test-seirmixing.R............. 0 tests
test-seirmixing.R............. 1 tests <1b>[0;32mOK<1b>[0m
test-seirmixing.R............. 2 tests <1b>[0;32mOK<1b>[0m
test-seirmixing.R............. 3 tests <1b>[0;32mOK<1b>[0m
test-seirmixing.R............. 4 tests <1b>[0;32mOK<1b>[0m
test-seirmixing.R............. 5 tests <1b>[0;32mOK<1b>[0m
test-seirmixing.R............. 6 tests <1b>[0;32mOK<1b>[0m
test-seirmixing.R............. 7 tests <1b>[0;32mOK<1b>[0m
test-seirmixing.R............. 8 tests <1b>[0;32mOK<1b>[0m
test-seirmixing.R............. 9 tests <1b>[0;32mOK<1b>[0m
test-seirmixing.R............. 10 tests <1b>[0;32mOK<1b>[0m
test-seirmixing.R............. 11 tests <1b>[0;32mOK<1b>[0m
test-seirmixing.R............. 12 tests <1b>[0;32mOK<1b>[0m
test-seirmixing.R............. 13 tests <1b>[0;32mOK<1b>[0m
test-seirmixing.R............. 14 tests <1b>[0;32mOK<1b>[0m
test-seirmixing.R............. 15 tests <1b>[0;32mOK<1b>[0m
test-seirmixing.R............. 16 tests <1b>[0;32mOK<1b>[0m <1b>[0;34m0.2s<1b>[0m
test-seirmixingquarantine.R... 0 tests
test-seirmixingquarantine.R... 0 tests
test-seirmixingquarantine.R... 0 tests
test-seirmixingquarantine.R... 0 tests
test-seirmixingquarantine.R... 0 tests
test-seirmixingquarantine.R... 0 tests
test-seirmixingquarantine.R... 0 tests
test-seirmixingquarantine.R... 0 tests _________________________________________________________________________
Running the model...
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| done.
test-seirmixingquarantine.R... 0 tests ________________________________________________________________________________
________________________________________________________________________________
SIMULATION STUDY
Name of the model : SEIR with Mixing and Quarantine
Population size : 9000
Agents' data : (none)
Number of entities : 3
Days (duration) : 100 (of 100)
Number of viruses : 1
Last run elapsed t : 259.00ms
Last run speed : 3.47 million agents x day / second
Rewiring : off
Global events:
- Update infected individuals (runs daily)
Virus(es):
- Flu
Tool(s):
(none)
Model parameters:
- Avg. Incubation days : 0.0090
- Contact rate : 40.0000
- Contact tracing days prior : 3.0000
- Contact tracing success rate : 0.7000
- Days undetected : 3.0000
- Hospitalization period : 7.0000
- Hospitalization rate : 0.0500
- Isolation period : 7.0000
- Isolation willingness : 0.5000
- Prob. Recovery : 0.1000
- Prob. Transmission : 1.0000
- Quarantine period : 14.0000
- Quarantine willingness : 0.8000
Distribution of the population at time 100:
- ( 0) Susceptible : 8999 -> 6000
- ( 1) Exposed : 1 -> 0
- ( 2) Infected : 0 -> 0
- ( 3) Isolated : 0 -> 0
- ( 4) Detected Hospitalized : 0 -> 0
- ( 5) Quarantined Susceptible : 0 -> 0
- ( 6) Quarantined Exposed : 0 -> 0
- ( 7) Isolated Recovered : 0 -> 0
- ( 8) Hospitalized : 0 -> 0
- ( 9) Recovered : 0 -> 3000
Transition Probabilities:
- Susceptible 1.00 0.00 - - - - 0.00 - - -
- Exposed - - 0.92 0.08 - - - - - -
- Infected - - 0.73 0.11 0.02 - - 0.01 0.03 0.09
- Isolated - - 0.15 0.71 0.04 - - 0.08 0.01 0.02
- Detected Hospitalized - - - - 0.86 - - - - 0.14
- Quarantined Susceptible - - - - - - - - - -
- Quarantined Exposed - - - 1.00 - - - - - -
- Isolated Recovered - - - - - - - 0.72 - 0.28
- Hospitalized - - - - - - - - 0.85 0.15
- Recovered - - - - - - - - - 1.00
test-seirmixingquarantine.R... 0 tests
test-seirmixingquarantine.R... 0 tests
test-seirmixingquarantine.R... 0 tests
test-seirmixingquarantine.R... 0 tests
test-seirmixingquarantine.R... 0 tests
test-seirmixingquarantine.R... 0 tests
test-seirmixingquarantine.R... 0 tests
test-seirmixingquarantine.R... 0 tests
test-seirmixingquarantine.R... 0 tests
test-seirmixingquarantine.R... 0 tests
test-seirmixingquarantine.R... 0 tests
test-seirmixingquarantine.R... 0 tests
test-seirmixingquarantine.R... 0 tests
test-seirmixingquarantine.R... 0 tests
test-seirmixingquarantine.R... 0 tests
test-seirmixingquarantine.R... 0 tests
test-seirmixingquarantine.R... 0 tests
test-seirmixingquarantine.R... 0 tests
test-seirmixingquarantine.R... 1 tests <1b>[0;32mOK<1b>[0m
test-seirmixingquarantine.R... 2 tests <1b>[0;32mOK<1b>[0m
test-seirmixingquarantine.R... 3 tests <1b>[0;32mOK<1b>[0m
test-seirmixingquarantine.R... 4 tests <1b>[0;32mOK<1b>[0m
test-seirmixingquarantine.R... 5 tests <1b>[0;32mOK<1b>[0m
test-seirmixingquarantine.R... 6 tests <1b>[0;32mOK<1b>[0m
test-seirmixingquarantine.R... 7 tests <1b>[0;32mOK<1b>[0m
test-seirmixingquarantine.R... 8 tests <1b>[0;32mOK<1b>[0m
test-seirmixingquarantine.R... 9 tests <1b>[0;32mOK<1b>[0m
test-seirmixingquarantine.R... 10 tests <1b>[0;32mOK<1b>[0m
test-seirmixingquarantine.R... 11 tests <1b>[0;32mOK<1b>[0m
test-seirmixingquarantine.R... 12 tests <1b>[0;32mOK<1b>[0m
test-seirmixingquarantine.R... 13 tests <1b>[0;32mOK<1b>[0m
test-seirmixingquarantine.R... 14 tests <1b>[0;32mOK<1b>[0m
test-seirmixingquarantine.R... 15 tests <1b>[0;32mOK<1b>[0m
test-seirmixingquarantine.R... 16 tests <1b>[0;32mOK<1b>[0m
test-seirmixingquarantine.R... 17 tests <1b>[0;32mOK<1b>[0m
test-seirmixingquarantine.R... 18 tests <1b>[0;32mOK<1b>[0m
test-seirmixingquarantine.R... 19 tests <1b>[0;32mOK<1b>[0m <1b>[0;34m0.3s<1b>[0m
test-sir.R.................... 1 tests <1b>[0;32mOK<1b>[0m
test-sir.R.................... 2 tests <1b>[0;32mOK<1b>[0m
test-sir.R.................... 3 tests <1b>[0;32mOK<1b>[0m
test-sir.R.................... 4 tests <1b>[0;32mOK<1b>[0m
test-sir.R.................... 5 tests <1b>[0;32mOK<1b>[0m
test-sir.R.................... 6 tests <1b>[0;32mOK<1b>[0m
test-sir.R.................... 7 tests <1b>[0;32mOK<1b>[0m
test-sir.R.................... 8 tests <1b>[0;32mOK<1b>[0m
test-sir.R.................... 9 tests <1b>[0;32mOK<1b>[0m
test-sir.R.................... 9 tests <1b>[0;32mOK<1b>[0m
test-sir.R.................... 9 tests <1b>[0;32mOK<1b>[0m
test-sir.R.................... 10 tests <1b>[0;32mOK<1b>[0m
test-sir.R.................... 10 tests <1b>[0;32mOK<1b>[0m
test-sir.R.................... 10 tests <1b>[0;32mOK<1b>[0m
test-sir.R.................... 11 tests <1b>[0;32mOK<1b>[0m
test-sir.R.................... 11 tests <1b>[0;32mOK<1b>[0m
test-sir.R.................... 11 tests <1b>[0;32mOK<1b>[0m
test-sir.R.................... 11 tests <1b>[0;32mOK<1b>[0m
test-sir.R.................... 12 tests <1b>[0;32mOK<1b>[0m
test-sir.R.................... 12 tests <1b>[0;32mOK<1b>[0m
test-sir.R.................... 12 tests <1b>[0;32mOK<1b>[0m
test-sir.R.................... 12 tests <1b>[0;32mOK<1b>[0m
test-sir.R.................... 12 tests <1b>[0;32mOK<1b>[0m
test-sir.R.................... 12 tests <1b>[0;32mOK<1b>[0m
test-sir.R.................... 12 tests <1b>[0;32mOK<1b>[0m
test-sir.R.................... 12 tests <1b>[0;32mOK<1b>[0m
test-sir.R.................... 12 tests <1b>[0;32mOK<1b>[0m
test-sir.R.................... 12 tests <1b>[0;32mOK<1b>[0m
test-sir.R.................... 13 tests <1b>[0;32mOK<1b>[0m
test-sir.R.................... 14 tests <1b>[0;32mOK<1b>[0m
test-sir.R.................... 15 tests <1b>[0;32mOK<1b>[0m
test-sir.R.................... 16 tests <1b>[0;32mOK<1b>[0m
test-sir.R.................... 17 tests <1b>[0;32mOK<1b>[0m
test-sir.R.................... 18 tests <1b>[0;32mOK<1b>[0m
test-sir.R.................... 19 tests <1b>[0;32mOK<1b>[0m
test-sir.R.................... 20 tests <1b>[0;32mOK<1b>[0m <1b>[0;34m1.2s<1b>[0m
test-sirconn.R................ 1 tests <1b>[0;32mOK<1b>[0m
test-sirconn.R................ 2 tests <1b>[0;32mOK<1b>[0m
test-sirconn.R................ 3 tests <1b>[0;32mOK<1b>[0m
test-sirconn.R................ 4 tests <1b>[0;32mOK<1b>[0m
test-sirconn.R................ 5 tests <1b>[0;32mOK<1b>[0m
test-sirconn.R................ 6 tests <1b>[0;32mOK<1b>[0m
test-sirconn.R................ 7 tests <1b>[0;32mOK<1b>[0m
test-sirconn.R................ 8 tests <1b>[0;32mOK<1b>[0m
test-sirconn.R................ 9 tests <1b>[0;32mOK<1b>[0m
test-sirconn.R................ 9 tests <1b>[0;32mOK<1b>[0m
test-sirconn.R................ 9 tests <1b>[0;32mOK<1b>[0m
test-sirconn.R................ 9 tests <1b>[0;32mOK<1b>[0m
test-sirconn.R................ 10 tests <1b>[0;32mOK<1b>[0m
test-sirconn.R................ 10 tests <1b>[0;32mOK<1b>[0m
test-sirconn.R................ 10 tests <1b>[0;32mOK<1b>[0m
test-sirconn.R................ 10 tests <1b>[0;32mOK<1b>[0m
test-sirconn.R................ 11 tests <1b>[0;32mOK<1b>[0m
test-sirconn.R................ 12 tests <1b>[0;32mOK<1b>[0m
test-sirconn.R................ 12 tests <1b>[0;32mOK<1b>[0m
test-sirconn.R................ 12 tests <1b>[0;32mOK<1b>[0m
test-sirconn.R................ 12 tests <1b>[0;32mOK<1b>[0m
test-sirconn.R................ 12 tests <1b>[0;32mOK<1b>[0m
test-sirconn.R................ 12 tests <1b>[0;32mOK<1b>[0m
test-sirconn.R................ 12 tests <1b>[0;32mOK<1b>[0m
test-sirconn.R................ 12 tests <1b>[0;32mOK<1b>[0m
test-sirconn.R................ 12 tests <1b>[0;32mOK<1b>[0m
test-sirconn.R................ 12 tests <1b>[0;32mOK<1b>[0m
test-sirconn.R................ 12 tests <1b>[0;32mOK<1b>[0m
test-sirconn.R................ 12 tests <1b>[0;32mOK<1b>[0m
test-sirconn.R................ 12 tests <1b>[0;32mOK<1b>[0m
test-sirconn.R................ 13 tests <1b>[0;32mOK<1b>[0m
test-sirconn.R................ 14 tests <1b>[0;32mOK<1b>[0m
test-sirconn.R................ 15 tests <1b>[0;32mOK<1b>[0m
test-sirconn.R................ 16 tests <1b>[0;32mOK<1b>[0m
test-sirconn.R................ 17 tests <1b>[0;32mOK<1b>[0m
test-sirconn.R................ 18 tests <1b>[0;32mOK<1b>[0m <1b>[0;34m0.1s<1b>[0m
test-sird.R................... 1 tests <1b>[0;32mOK<1b>[0m
test-sird.R................... 2 tests <1b>[0;32mOK<1b>[0m
test-sird.R................... 3 tests <1b>[0;32mOK<1b>[0m
test-sird.R................... 4 tests <1b>[0;32mOK<1b>[0m
test-sird.R................... 5 tests <1b>[0;32mOK<1b>[0m
test-sird.R................... 6 tests <1b>[0;32mOK<1b>[0m
test-sird.R................... 7 tests <1b>[0;32mOK<1b>[0m
test-sird.R................... 8 tests <1b>[0;32mOK<1b>[0m
test-sird.R................... 9 tests <1b>[0;32mOK<1b>[0m
test-sird.R................... 10 tests <1b>[0;32mOK<1b>[0m
test-sird.R................... 10 tests <1b>[0;32mOK<1b>[0m
test-sird.R................... 11 tests <1b>[0;32mOK<1b>[0m
test-sird.R................... 12 tests <1b>[0;32mOK<1b>[0m
test-sird.R................... 13 tests <1b>[0;32mOK<1b>[0m
test-sird.R................... 14 tests <1b>[0;32mOK<1b>[0m
test-sird.R................... 14 tests <1b>[0;32mOK<1b>[0m
test-sird.R................... 14 tests <1b>[0;32mOK<1b>[0m
test-sird.R................... 14 tests <1b>[0;32mOK<1b>[0m
test-sird.R................... 14 tests <1b>[0;32mOK<1b>[0m
test-sird.R................... 14 tests <1b>[0;32mOK<1b>[0m
test-sird.R................... 14 tests <1b>[0;32mOK<1b>[0m
test-sird.R................... 14 tests <1b>[0;32mOK<1b>[0m
test-sird.R................... 14 tests <1b>[0;32mOK<1b>[0m
test-sird.R................... 14 tests <1b>[0;32mOK<1b>[0m
test-sird.R................... 15 tests <1b>[0;32mOK<1b>[0m
test-sird.R................... 16 tests <1b>[0;32mOK<1b>[0m
test-sird.R................... 17 tests <1b>[0;32mOK<1b>[0m
test-sird.R................... 18 tests <1b>[0;32mOK<1b>[0m
test-sird.R................... 19 tests <1b>[0;32mOK<1b>[0m <1b>[0;36m43ms<1b>[0m
test-sirdconn.R............... 0 tests
test-sirdconn.R............... 0 tests
test-sirdconn.R............... 0 tests
test-sirdconn.R............... 0 tests
test-sirdconn.R............... 0 tests
test-sirdconn.R............... 0 tests
test-sirdconn.R............... 0 tests
test-sirdconn.R............... 1 tests <1b>[0;32mOK<1b>[0m
test-sirdconn.R............... 2 tests <1b>[0;32mOK<1b>[0m
test-sirdconn.R............... 3 tests <1b>[0;32mOK<1b>[0m
test-sirdconn.R............... 4 tests <1b>[0;32mOK<1b>[0m
test-sirdconn.R............... 4 tests <1b>[0;32mOK<1b>[0m
test-sirdconn.R............... 4 tests <1b>[0;32mOK<1b>[0m
test-sirdconn.R............... 4 tests <1b>[0;32mOK<1b>[0m
test-sirdconn.R............... 4 tests <1b>[0;32mOK<1b>[0m
test-sirdconn.R............... 4 tests <1b>[0;32mOK<1b>[0m
test-sirdconn.R............... 5 tests <1b>[0;32mOK<1b>[0m
test-sirdconn.R............... 6 tests <1b>[0;32mOK<1b>[0m
test-sirdconn.R............... 7 tests <1b>[0;32mOK<1b>[0m
test-sirdconn.R............... 8 tests <1b>[0;32mOK<1b>[0m
test-sirdconn.R............... 9 tests <1b>[0;32mOK<1b>[0m
test-sirdconn.R............... 10 tests <1b>[0;32mOK<1b>[0m
test-sirdconn.R............... 11 tests <1b>[0;32mOK<1b>[0m <1b>[0;36m7ms<1b>[0m
test-sirlogit.R............... 0 tests
test-sirlogit.R............... 0 tests
test-sirlogit.R............... 0 tests
test-sirlogit.R............... 0 tests
test-sirlogit.R............... 0 tests
test-sirlogit.R............... 0 tests
test-sirlogit.R............... 0 tests
test-sirlogit.R............... 0 tests
test-sirlogit.R............... 0 tests
test-sirlogit.R............... 0 tests
test-sirlogit.R............... 1 tests <1b>[0;32mOK<1b>[0m
test-sirlogit.R............... 2 tests <1b>[0;32mOK<1b>[0m
test-sirlogit.R............... 3 tests <1b>[0;32mOK<1b>[0m
test-sirlogit.R............... 3 tests <1b>[0;32mOK<1b>[0m
test-sirlogit.R............... 3 tests <1b>[0;32mOK<1b>[0m
test-sirlogit.R............... 3 tests <1b>[0;32mOK<1b>[0m
test-sirlogit.R............... 3 tests <1b>[0;32mOK<1b>[0m
test-sirlogit.R............... 3 tests <1b>[0;32mOK<1b>[0m
test-sirlogit.R............... 3 tests <1b>[0;32mOK<1b>[0m
test-sirlogit.R............... 3 tests <1b>[0;32mOK<1b>[0m
test-sirlogit.R............... 3 tests <1b>[0;32mOK<1b>[0m
test-sirlogit.R............... 3 tests <1b>[0;32mOK<1b>[0m
test-sirlogit.R............... 3 tests <1b>[0;32mOK<1b>[0m
test-sirlogit.R............... 3 tests <1b>[0;32mOK<1b>[0m
test-sirlogit.R............... 4 tests <1b>[0;32mOK<1b>[0m
test-sirlogit.R............... 5 tests <1b>[0;32mOK<1b>[0m
test-sirlogit.R............... 6 tests <1b>[0;32mOK<1b>[0m
test-sirlogit.R............... 7 tests <1b>[0;32mOK<1b>[0m
test-sirlogit.R............... 8 tests <1b>[0;32mOK<1b>[0m
test-sirlogit.R............... 9 tests <1b>[0;32mOK<1b>[0m
test-sirlogit.R............... 10 tests <1b>[0;32mOK<1b>[0m
test-sirlogit.R............... 11 tests <1b>[0;32mOK<1b>[0m
test-sirlogit.R............... 12 tests <1b>[0;32mOK<1b>[0m <1b>[0;36m17ms<1b>[0m
test-sirmixing.R.............. 0 tests
test-sirmixing.R.............. 0 tests
test-sirmixing.R.............. 0 tests
test-sirmixing.R.............. 0 tests
test-sirmixing.R.............. 0 tests
test-sirmixing.R.............. 0 tests
test-sirmixing.R.............. 0 tests
test-sirmixing.R.............. 1 tests <1b>[0;32mOK<1b>[0m
test-sirmixing.R.............. 2 tests <1b>[0;32mOK<1b>[0m
test-sirmixing.R.............. 3 tests <1b>[0;32mOK<1b>[0m
test-sirmixing.R.............. 4 tests <1b>[0;32mOK<1b>[0m
test-sirmixing.R.............. 4 tests <1b>[0;32mOK<1b>[0m
test-sirmixing.R.............. 4 tests <1b>[0;32mOK<1b>[0m
test-sirmixing.R.............. 4 tests <1b>[0;32mOK<1b>[0m
test-sirmixing.R.............. 4 tests <1b>[0;32mOK<1b>[0m
test-sirmixing.R.............. 4 tests <1b>[0;32mOK<1b>[0m
test-sirmixing.R.............. 4 tests <1b>[0;32mOK<1b>[0m
test-sirmixing.R.............. 4 tests <1b>[0;32mOK<1b>[0m
test-sirmixing.R.............. 5 tests <1b>[0;32mOK<1b>[0m
test-sirmixing.R.............. 6 tests <1b>[0;32mOK<1b>[0m
test-sirmixing.R.............. 7 tests <1b>[0;32mOK<1b>[0m
test-sirmixing.R.............. 8 tests <1b>[0;32mOK<1b>[0m
test-sirmixing.R.............. 9 tests <1b>[0;32mOK<1b>[0m
test-sirmixing.R.............. 10 tests <1b>[0;32mOK<1b>[0m
test-sirmixing.R.............. 11 tests <1b>[0;32mOK<1b>[0m <1b>[0;36m11ms<1b>[0m
test-sis.R.................... 1 tests <1b>[0;32mOK<1b>[0m
test-sis.R.................... 2 tests <1b>[0;32mOK<1b>[0m
test-sis.R.................... 3 tests <1b>[0;32mOK<1b>[0m
test-sis.R.................... 4 tests <1b>[0;32mOK<1b>[0m
test-sis.R.................... 5 tests <1b>[0;32mOK<1b>[0m
test-sis.R.................... 6 tests <1b>[0;32mOK<1b>[0m
test-sis.R.................... 7 tests <1b>[0;32mOK<1b>[0m
test-sis.R.................... 8 tests <1b>[0;32mOK<1b>[0m
test-sis.R.................... 9 tests <1b>[0;32mOK<1b>[0m
test-sis.R.................... 9 tests <1b>[0;32mOK<1b>[0m
test-sis.R.................... 9 tests <1b>[0;32mOK<1b>[0m
test-sis.R.................... 9 tests <1b>[0;32mOK<1b>[0m
test-sis.R.................... 9 tests <1b>[0;32mOK<1b>[0m
test-sis.R.................... 9 tests <1b>[0;32mOK<1b>[0m
test-sis.R.................... 9 tests <1b>[0;32mOK<1b>[0m
test-sis.R.................... 9 tests <1b>[0;32mOK<1b>[0m
test-sis.R.................... 9 tests <1b>[0;32mOK<1b>[0m
test-sis.R.................... 10 tests <1b>[0;32mOK<1b>[0m
test-sis.R.................... 11 tests <1b>[0;32mOK<1b>[0m
test-sis.R.................... 12 tests <1b>[0;32mOK<1b>[0m
test-sis.R.................... 13 tests <1b>[0;32mOK<1b>[0m <1b>[0;34m0.8s<1b>[0m
test-sisd.R................... 0 tests
test-sisd.R................... 0 tests
test-sisd.R................... 0 tests
test-sisd.R................... 0 tests
test-sisd.R................... 0 tests
test-sisd.R................... 1 tests <1b>[0;32mOK<1b>[0m
test-sisd.R................... 2 tests <1b>[0;32mOK<1b>[0m
test-sisd.R................... 3 tests <1b>[0;32mOK<1b>[0m
test-sisd.R................... 4 tests <1b>[0;32mOK<1b>[0m
test-sisd.R................... 4 tests <1b>[0;32mOK<1b>[0m
test-sisd.R................... 4 tests <1b>[0;32mOK<1b>[0m
test-sisd.R................... 4 tests <1b>[0;32mOK<1b>[0m
test-sisd.R................... 4 tests <1b>[0;32mOK<1b>[0m
test-sisd.R................... 5 tests <1b>[0;32mOK<1b>[0m
test-sisd.R................... 6 tests <1b>[0;32mOK<1b>[0m
test-sisd.R................... 7 tests <1b>[0;32mOK<1b>[0m
test-sisd.R................... 8 tests <1b>[0;32mOK<1b>[0m
test-sisd.R................... 9 tests <1b>[0;32mOK<1b>[0m <1b>[0;36m7ms<1b>[0m
test-surv.R................... 0 tests
test-surv.R................... 0 tests
test-surv.R................... 0 tests
test-surv.R................... 0 tests
test-surv.R................... 0 tests
test-surv.R................... 0 tests
test-surv.R................... 0 tests
test-surv.R................... 0 tests
test-surv.R................... 0 tests
test-surv.R................... 0 tests
test-surv.R................... 0 tests
test-surv.R................... 0 tests
test-surv.R................... 0 tests
test-surv.R................... 1 tests <1b>[0;32mOK<1b>[0m
test-surv.R................... 2 tests <1b>[0;32mOK<1b>[0m
test-surv.R................... 3 tests <1b>[0;32mOK<1b>[0m
test-surv.R................... 4 tests <1b>[0;32mOK<1b>[0m
test-surv.R................... 4 tests <1b>[0;32mOK<1b>[0m
test-surv.R................... 4 tests <1b>[0;32mOK<1b>[0m
test-surv.R................... 4 tests <1b>[0;32mOK<1b>[0m
test-surv.R................... 4 tests <1b>[0;32mOK<1b>[0m
test-surv.R................... 5 tests <1b>[0;32mOK<1b>[0m
test-surv.R................... 6 tests <1b>[0;32mOK<1b>[0m
test-surv.R................... 7 tests <1b>[0;32mOK<1b>[0m
test-surv.R................... 8 tests <1b>[0;32mOK<1b>[0m
test-surv.R................... 9 tests <1b>[0;32mOK<1b>[0m
test-surv.R................... 10 tests <1b>[0;32mOK<1b>[0m
test-surv.R................... 11 tests <1b>[0;32mOK<1b>[0m
test-surv.R................... 12 tests <1b>[0;32mOK<1b>[0m
test-surv.R................... 13 tests <1b>[0;32mOK<1b>[0m
test-surv.R................... 14 tests <1b>[0;32mOK<1b>[0m
test-surv.R................... 15 tests <1b>[0;32mOK<1b>[0m
test-surv.R................... 16 tests <1b>[0;32mOK<1b>[0m
test-surv.R................... 17 tests <1b>[0;32mOK<1b>[0m <1b>[0;36m13ms<1b>[0m
test-tool.R................... 0 tests
test-tool.R................... 1 tests <1b>[0;32mOK<1b>[0m
test-tool.R................... 2 tests <1b>[0;32mOK<1b>[0m
test-tool.R................... 3 tests <1b>[0;32mOK<1b>[0m
test-tool.R................... 4 tests <1b>[0;32mOK<1b>[0m
test-tool.R................... 5 tests <1b>[0;32mOK<1b>[0m
test-tool.R................... 5 tests <1b>[0;32mOK<1b>[0m
test-tool.R................... 6 tests <1b>[0;32mOK<1b>[0m
test-tool.R................... 7 tests <1b>[0;32mOK<1b>[0m
test-tool.R................... 8 tests <1b>[0;32mOK<1b>[0m
test-tool.R................... 8 tests <1b>[0;32mOK<1b>[0m
test-tool.R................... 9 tests <1b>[0;32mOK<1b>[0m
test-tool.R................... 10 tests <1b>[0;32mOK<1b>[0m
test-tool.R................... 11 tests <1b>[0;32mOK<1b>[0m
test-tool.R................... 12 tests <1b>[0;32mOK<1b>[0m
test-tool.R................... 13 tests <1b>[0;32mOK<1b>[0m
test-tool.R................... 14 tests <1b>[0;32mOK<1b>[0m
test-tool.R................... 15 tests <1b>[0;32mOK<1b>[0m
test-tool.R................... 16 tests <1b>[0;32mOK<1b>[0m
test-tool.R................... 17 tests <1b>[0;32mOK<1b>[0m
test-tool.R................... 18 tests <1b>[0;32mOK<1b>[0m <1b>[0;36m11ms<1b>[0m
test-virus.R.................. 1 tests <1b>[0;32mOK<1b>[0m
test-virus.R.................. 2 tests <1b>[0;32mOK<1b>[0m
test-virus.R.................. 3 tests <1b>[0;32mOK<1b>[0m
test-virus.R.................. 4 tests <1b>[0;32mOK<1b>[0m <1b>[0;36m4ms<1b>[0m
----- FAILED[xcpt]: test-model-methods.R<19--22>
call| expect_message(md_with_output <- draw_mermaid(model, output_file = "mermaid_diagram.txt"),
call| --> "Diagram written")
diff| No message was emitted
diff| Found 0 message(s), 0 warning(s), and 1 error(s):
diff|
diff| ERR: Could not open the file mermaid_diagram.txt for writing.
----- FAILED[data]: test-model-methods.R<25--25>
call| expect_true(file.exists("mermaid_diagram.txt"))
diff| Expected TRUE, got FALSE
Error: 2 out of 511 tests failed
In addition: Warning message:
In file.remove("mermaid_diagram.txt") :
cannot remove file 'mermaid_diagram.txt', reason 'Read-only file system'
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 0.10.0.0
Check: tests
Result: ERROR
Running ‘tinytest.R’ [21s/34s]
Running the tests in ‘tests/tinytest.R’ failed.
Complete output:
>
> if (requireNamespace("tinytest", quietly = TRUE)) {
+
+ test_tmat_matches_expected <- function(tmat) {
+ # Check for out of bounds values
+ tinytest::expect_false(any(tmat < 0))
+ tinytest::expect_false(any(tmat > 1))
+ }
+
+ tinytest::test_package("epiworldR")
+ }
Thank you for using epiworldR! Please consider citing it in your work.
You can find the citation information by running
citation("epiworldR")
test-agents-and-dist-virus-tool.R 0 tests
test-agents-and-dist-virus-tool.R 0 tests _________________________________________________________________________
Running the model...
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| done.
test-agents-and-dist-virus-tool.R 0 tests
test-agents-and-dist-virus-tool.R 0 tests
test-agents-and-dist-virus-tool.R 1 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 1 tests <1b>[0;32mOK<1b>[0m Starting multiple runs (100) using 2 thread(s)
_________________________________________________________________________
_________________________________________________________________________
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| done.
test-agents-and-dist-virus-tool.R 1 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 1 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 1 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 1 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 2 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 2 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 2 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 2 tests <1b>[0;32mOK<1b>[0m _________________________________________________________________________
Running the model...
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| done.
test-agents-and-dist-virus-tool.R 2 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 2 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 3 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 4 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 4 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 4 tests <1b>[0;32mOK<1b>[0m Starting multiple runs (100) using 2 thread(s)
_________________________________________________________________________
_________________________________________________________________________
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| done.
test-agents-and-dist-virus-tool.R 4 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 4 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 4 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 5 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 5 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 5 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 5 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 5 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 5 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 5 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 5 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 5 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 5 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 5 tests <1b>[0;32mOK<1b>[0m _________________________________________________________________________
Running the model...
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| done.
test-agents-and-dist-virus-tool.R 5 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 5 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 6 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 6 tests <1b>[0;32mOK<1b>[0m Starting multiple runs (100) using 2 thread(s)
_________________________________________________________________________
_________________________________________________________________________
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| done.
test-agents-and-dist-virus-tool.R 6 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 6 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 6 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 6 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 7 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 7 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 7 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 7 tests <1b>[0;32mOK<1b>[0m _________________________________________________________________________
Running the model...
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| done.
test-agents-and-dist-virus-tool.R 7 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 7 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 8 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 9 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 9 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 9 tests <1b>[0;32mOK<1b>[0m Starting multiple runs (100) using 2 thread(s)
_________________________________________________________________________
_________________________________________________________________________
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| done.
test-agents-and-dist-virus-tool.R 9 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 9 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 9 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 10 tests <1b>[0;32mOK<1b>[0m <1b>[0;34m4.0s<1b>[0m
test-diffnet.R................ 0 tests
test-diffnet.R................ 0 tests
test-diffnet.R................ 0 tests
test-diffnet.R................ 0 tests
test-diffnet.R................ 0 tests
test-diffnet.R................ 0 tests
test-diffnet.R................ 0 tests
test-diffnet.R................ 1 tests <1b>[0;32mOK<1b>[0m
test-diffnet.R................ 2 tests <1b>[0;32mOK<1b>[0m
test-diffnet.R................ 3 tests <1b>[0;32mOK<1b>[0m
test-diffnet.R................ 4 tests <1b>[0;32mOK<1b>[0m
test-diffnet.R................ 4 tests <1b>[0;32mOK<1b>[0m
test-diffnet.R................ 4 tests <1b>[0;32mOK<1b>[0m
test-diffnet.R................ 4 tests <1b>[0;32mOK<1b>[0m
test-diffnet.R................ 4 tests <1b>[0;32mOK<1b>[0m
test-diffnet.R................ 4 tests <1b>[0;32mOK<1b>[0m
test-diffnet.R................ 4 tests <1b>[0;32mOK<1b>[0m
test-diffnet.R................ 4 tests <1b>[0;32mOK<1b>[0m
test-diffnet.R................ 4 tests <1b>[0;32mOK<1b>[0m
test-diffnet.R................ 4 tests <1b>[0;32mOK<1b>[0m
test-diffnet.R................ 4 tests <1b>[0;32mOK<1b>[0m
test-diffnet.R................ 4 tests <1b>[0;32mOK<1b>[0m
test-diffnet.R................ 4 tests <1b>[0;32mOK<1b>[0m
test-diffnet.R................ 4 tests <1b>[0;32mOK<1b>[0m
test-diffnet.R................ 4 tests <1b>[0;32mOK<1b>[0m
test-diffnet.R................ 5 tests <1b>[0;32mOK<1b>[0m
test-diffnet.R................ 6 tests <1b>[0;32mOK<1b>[0m
test-diffnet.R................ 7 tests <1b>[0;32mOK<1b>[0m
test-diffnet.R................ 8 tests <1b>[0;32mOK<1b>[0m
test-diffnet.R................ 9 tests <1b>[0;32mOK<1b>[0m
test-diffnet.R................ 10 tests <1b>[0;32mOK<1b>[0m
test-diffnet.R................ 11 tests <1b>[0;32mOK<1b>[0m
test-diffnet.R................ 12 tests <1b>[0;32mOK<1b>[0m <1b>[0;36m13ms<1b>[0m
test-get.R.................... 0 tests
test-get.R.................... 0 tests
test-get.R.................... 1 tests <1b>[0;32mOK<1b>[0m
test-get.R.................... 2 tests <1b>[0;32mOK<1b>[0m
test-get.R.................... 3 tests <1b>[0;32mOK<1b>[0m
test-get.R.................... 4 tests <1b>[0;32mOK<1b>[0m
test-get.R.................... 5 tests <1b>[0;32mOK<1b>[0m
test-get.R.................... 6 tests <1b>[0;32mOK<1b>[0m
test-get.R.................... 6 tests <1b>[0;32mOK<1b>[0m <1b>[0;36m8ms<1b>[0m
test-lfmcmc.R................. 0 tests
test-lfmcmc.R................. 0 tests
test-lfmcmc.R................. 0 tests
test-lfmcmc.R................. 0 tests
test-lfmcmc.R................. 0 tests
test-lfmcmc.R................. 1 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 2 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 3 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 4 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 5 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 5 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 6 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 6 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 6 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 6 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 6 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 7 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 8 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 9 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 10 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 10 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 10 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 10 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 11 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 12 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 13 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 14 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 15 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 16 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 17 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 18 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 19 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 20 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 21 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 22 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 22 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 23 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 24 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 25 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 26 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 26 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 27 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 28 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 29 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 30 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 31 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 32 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 33 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 34 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 35 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 36 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 37 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 38 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 39 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 39 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 40 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 40 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 40 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 40 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 41 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 42 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 43 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 44 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 45 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 46 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 47 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 47 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 47 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 47 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 47 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 47 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 48 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 49 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 50 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 51 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 52 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 52 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 52 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 52 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 52 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 52 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 52 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 52 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 52 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 52 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 52 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 52 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 53 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 53 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 53 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 54 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 55 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 56 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 57 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 58 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 59 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 60 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 61 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 62 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 63 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 64 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 65 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 66 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 67 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 68 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 69 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 70 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 71 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 72 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 73 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 74 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 75 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 76 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 77 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 78 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 79 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 80 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 81 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 82 tests <1b>[0;32mOK<1b>[0m <1b>[0;34m19.1s<1b>[0m
test-measles-quarantine-errors.R 0 tests
test-measles-quarantine-errors.R 1 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 2 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 2 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 3 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 4 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 5 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 6 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 7 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 8 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 9 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 9 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 9 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 9 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 9 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 9 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 10 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 11 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 12 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 13 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 14 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 15 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 16 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 17 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 18 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 19 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 20 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 21 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 22 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 23 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 24 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 25 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 26 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 27 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 28 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 29 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 30 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 31 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 32 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 33 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 34 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 35 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 36 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 37 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 38 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 39 tests <1b>[0;32mOK<1b>[0m <1b>[0;36m52ms<1b>[0m
test-measles-quarantine-math.R 0 tests Starting multiple runs (200) using 2 thread(s)
_________________________________________________________________________
_________________________________________________________________________
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| done.
----- PASSED : test-measles-quarantine-math.R<4--39>
call| expect_equal(r0_obs, R0, tolerance = 0.1)
Starting multiple runs (200) using 2 thread(s)
_________________________________________________________________________
_________________________________________________________________________
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| done.
----- PASSED : test-measles-quarantine-math.R<4--39>
call| expect_equal(r0_obs, R0, tolerance = 0.1)
Starting multiple runs (200) using 2 thread(s)
_________________________________________________________________________
_________________________________________________________________________
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| done.
----- PASSED : test-measles-quarantine-math.R<4--39>
call| expect_equal(r0_obs, R0, tolerance = 0.1)
test-measles-quarantine-math.R 3 tests <1b>[0;32mOK<1b>[0m <1b>[0;34m3.2s<1b>[0m
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests _________________________________________________________________________
Running the model...
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| done.
test-measlesmixing.R.......... 0 tests ________________________________________________________________________________
________________________________________________________________________________
SIMULATION STUDY
Name of the model : Measles with Mixing and Quarantine
Population size : 9000
Agents' data : (none)
Number of entities : 3
Days (duration) : 100 (of 100)
Number of viruses : 1
Last run elapsed t : 41.00ms
Last run speed : 21.57 million agents x day / second
Rewiring : off
Global events:
- Update infected individuals (runs daily)
Virus(es):
- Measles
Tool(s):
- Vaccine
Model parameters:
- (IGNORED) Vax improved recovery : 0.8000
- Contact rate : 15.0000
- Contact tracing days prior : 4.0000
- Contact tracing success rate : 0.8000
- Days undetected : 2.0000
- Hospitalization period : 10.0000
- Hospitalization rate : 0.1000
- Incubation period : 10.0000
- Isolation period : 10.0000
- Isolation willingness : 0.8000
- Prodromal period : 3.0000
- Quarantine period : 14.0000
- Quarantine willingness : 0.9000
- Rash period : 7.0000
- Transmission rate : 0.9000
- Vaccination rate : 0.9500
- Vax efficacy : 0.9700
Distribution of the population at time 100:
- ( 0) Susceptible : 8999 -> 8999
- ( 1) Exposed : 1 -> 0
- ( 2) Prodromal : 0 -> 0
- ( 3) Rash : 0 -> 0
- ( 4) Isolated : 0 -> 0
- ( 5) Isolated Recovered : 0 -> 0
- ( 6) Detected Hospitalized : 0 -> 0
- ( 7) Quarantined Exposed : 0 -> 0
- ( 8) Quarantined Susceptible : 0 -> 0
- ( 9) Quarantined Prodromal : 0 -> 0
- (10) Quarantined Recovered : 0 -> 0
- (11) Hospitalized : 0 -> 0
- (12) Recovered : 0 -> 1
Transition Probabilities:
- Susceptible 1.00 0.00 - - - - - - - - - - -
- Exposed - 0.96 0.04 - - - - - - - - - -
- Prodromal - - - 1.00 - - - - - - - - -
- Rash - - - - - 1.00 - - - - - - -
- Isolated - - - - - - - - - - - - -
- Isolated Recovered - - - - - 0.89 - - - - - - 0.11
- Detected Hospitalized - - - - - - - - - - - - -
- Quarantined Exposed - - - - - - - - - - - - -
- Quarantined Susceptible - - - - - - - - - - - - -
- Quarantined Prodromal - - - - - - - - - - - - -
- Quarantined Recovered - - - - - - - - - - - - -
- Hospitalized - - - - - - - - - - - - -
- Recovered - - - - - - - - - - - - 1.00
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 1 tests <1b>[0;32mOK<1b>[0m
test-measlesmixing.R.......... 2 tests <1b>[0;32mOK<1b>[0m
test-measlesmixing.R.......... 3 tests <1b>[0;32mOK<1b>[0m
test-measlesmixing.R.......... 4 tests <1b>[0;32mOK<1b>[0m
test-measlesmixing.R.......... 5 tests <1b>[0;32mOK<1b>[0m
test-measlesmixing.R.......... 6 tests <1b>[0;32mOK<1b>[0m
test-measlesmixing.R.......... 7 tests <1b>[0;32mOK<1b>[0m
test-measlesmixing.R.......... 8 tests <1b>[0;32mOK<1b>[0m <1b>[0;36m88ms<1b>[0m
test-measlesmixingriskquarantine-multiple.R 0 tests
test-measlesmixingriskquarantine-multiple.R 0 tests
test-measlesmixingriskquarantine-multiple.R 0 tests
test-measlesmixingriskquarantine-multiple.R 0 tests
test-measlesmixingriskquarantine-multiple.R 0 tests
test-measlesmixingriskquarantine-multiple.R 0 tests
test-measlesmixingriskquarantine-multiple.R 0 tests
test-measlesmixingriskquarantine-multiple.R 0 tests
test-measlesmixingriskquarantine-multiple.R 0 tests
test-measlesmixingriskquarantine-multiple.R 0 tests Starting multiple runs (50) using 2 thread(s)
_________________________________________________________________________
_________________________________________________________________________
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| done.
test-measlesmixingriskquarantine-multiple.R 0 tests Starting multiple runs (50) using 2 thread(s)
_________________________________________________________________________
_________________________________________________________________________
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| done.
test-measlesmixingriskquarantine-multiple.R 0 tests Starting multiple runs (50) using 2 thread(s)
_________________________________________________________________________
_________________________________________________________________________
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| done.
test-measlesmixingriskquarantine-multiple.R 0 tests Starting multiple runs (50) using 2 thread(s)
_________________________________________________________________________
_________________________________________________________________________
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| done.
test-measlesmixingriskquarantine-multiple.R 0 tests Starting multiple runs (50) using 2 thread(s)
_________________________________________________________________________
_________________________________________________________________________
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| done.
test-measlesmixingriskquarantine-multiple.R 0 tests
test-measlesmixingriskquarantine-multiple.R 1 tests <1b>[0;32mOK<1b>[0m
test-measlesmixingriskquarantine-multiple.R 2 tests <1b>[0;32mOK<1b>[0m
test-measlesmixingriskquarantine-multiple.R 3 tests <1b>[0;32mOK<1b>[0m
test-measlesmixingriskquarantine-multiple.R 4 tests <1b>[0;32mOK<1b>[0m
test-measlesmixingriskquarantine-multiple.R 5 tests <1b>[0;32mOK<1b>[0m
test-measlesmixingriskquarantine-multiple.R 6 tests <1b>[0;32mOK<1b>[0m
test-measlesmixingriskquarantine-multiple.R 7 tests <1b>[0;32mOK<1b>[0m <1b>[0;34m1.2s<1b>[0m
test-measlesmixingriskquarantine.R 0 tests
test-measlesmixingriskquarantine.R 0 tests
test-measlesmixingriskquarantine.R 0 tests
test-measlesmixingriskquarantine.R 0 tests
test-measlesmixingriskquarantine.R 0 tests
test-measlesmixingriskquarantine.R 0 tests
test-measlesmixingriskquarantine.R 0 tests
test-measlesmixingriskquarantine.R 0 tests _________________________________________________________________________
Running the model...
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| done.
test-measlesmixingriskquarantine.R 0 tests ________________________________________________________________________________
________________________________________________________________________________
SIMULATION STUDY
Name of the model : Measles with Mixing and Risk-based Quarantine
Population size : 9000
Agents' data : (none)
Number of entities : 3
Days (duration) : 100 (of 100)
Number of viruses : 1
Last run elapsed t : 25.00ms
Last run speed : 35.56 million agents x day / second
Rewiring : off
Global events:
- Update infected individuals (runs daily)
Virus(es):
- Measles
Tool(s):
- Vaccine
Model parameters:
- Contact rate : 15.0000
- Contact tracing days prior : 4.0000
- Contact tracing success rate : 0.8000
- Days undetected : 2.0000
- Detection rate quarantine : 0.5000
- Hospitalization period : 10.0000
- Hospitalization rate : 0.1000
- Incubation period : 10.0000
- Isolation period : 10.0000
- Isolation willingness : 0.8000
- Prodromal period : 3.0000
- Quarantine period high : 21.0000
- Quarantine period low : 7.0000
- Quarantine period medium : 14.0000
- Quarantine willingness : 0.9000
- Rash period : 7.0000
- Transmission rate : 0.9000
- Vaccination rate : 0.9500
- Vax efficacy : 0.9700
Distribution of the population at time 100:
- ( 0) Susceptible : 8999 -> 8999
- ( 1) Exposed : 1 -> 0
- ( 2) Prodromal : 0 -> 0
- ( 3) Rash : 0 -> 0
- ( 4) Isolated : 0 -> 0
- ( 5) Isolated Recovered : 0 -> 0
- ( 6) Detected Hospitalized : 0 -> 0
- ( 7) Quarantined Exposed : 0 -> 0
- ( 8) Quarantined Susceptible : 0 -> 0
- ( 9) Quarantined Prodromal : 0 -> 0
- (10) Quarantined Recovered : 0 -> 0
- (11) Hospitalized : 0 -> 0
- (12) Recovered : 0 -> 1
Transition Probabilities:
- Susceptible 1.00 0.00 - - - - - - 0.00 - - - -
- Exposed - 0.96 0.04 - - - - - - - - - -
- Prodromal - - - 1.00 - - - - - - - - -
- Rash - - - - - 1.00 - - - - - - -
- Isolated - - - - - - - - - - - - -
- Isolated Recovered - - - - - 0.89 - - - - - - 0.11
- Detected Hospitalized - - - - - - - - - - - - -
- Quarantined Exposed - - - - - - - - - - - - -
- Quarantined Susceptible 0.09 - - - - - - - 0.91 - - - -
- Quarantined Prodromal - - - - - - - - - - - - -
- Quarantined Recovered - - - - - - - - - - - - -
- Hospitalized - - - - - - - - - - - - -
- Recovered - - - - - - - - - - - - 1.00
test-measlesmixingriskquarantine.R 0 tests
test-measlesmixingriskquarantine.R 0 tests
test-measlesmixingriskquarantine.R 0 tests
test-measlesmixingriskquarantine.R 0 tests
test-measlesmixingriskquarantine.R 0 tests
test-measlesmixingriskquarantine.R 0 tests
test-measlesmixingriskquarantine.R 0 tests
test-measlesmixingriskquarantine.R 0 tests
test-measlesmixingriskquarantine.R 0 tests
test-measlesmixingriskquarantine.R 0 tests
test-measlesmixingriskquarantine.R 0 tests
test-measlesmixingriskquarantine.R 0 tests
test-measlesmixingriskquarantine.R 0 tests
test-measlesmixingriskquarantine.R 0 tests
test-measlesmixingriskquarantine.R 0 tests
test-measlesmixingriskquarantine.R 0 tests
test-measlesmixingriskquarantine.R 1 tests <1b>[0;32mOK<1b>[0m
test-measlesmixingriskquarantine.R 2 tests <1b>[0;32mOK<1b>[0m
test-measlesmixingriskquarantine.R 3 tests <1b>[0;32mOK<1b>[0m
test-measlesmixingriskquarantine.R 4 tests <1b>[0;32mOK<1b>[0m
test-measlesmixingriskquarantine.R 5 tests <1b>[0;32mOK<1b>[0m
test-measlesmixingriskquarantine.R 6 tests <1b>[0;32mOK<1b>[0m
test-measlesmixingriskquarantine.R 7 tests <1b>[0;32mOK<1b>[0m
test-measlesmixingriskquarantine.R 8 tests <1b>[0;32mOK<1b>[0m
test-measlesmixingriskquarantine.R 9 tests <1b>[0;32mOK<1b>[0m
test-measlesmixingriskquarantine.R 10 tests <1b>[0;32mOK<1b>[0m
test-measlesmixingriskquarantine.R 11 tests <1b>[0;32mOK<1b>[0m
test-measlesmixingriskquarantine.R 12 tests <1b>[0;32mOK<1b>[0m
test-measlesmixingriskquarantine.R 13 tests <1b>[0;32mOK<1b>[0m
test-measlesmixingriskquarantine.R 14 tests <1b>[0;32mOK<1b>[0m
test-measlesmixingriskquarantine.R 15 tests <1b>[0;32mOK<1b>[0m
test-measlesmixingriskquarantine.R 16 tests <1b>[0;32mOK<1b>[0m
test-measlesmixingriskquarantine.R 17 tests <1b>[0;32mOK<1b>[0m
test-measlesmixingriskquarantine.R 18 tests <1b>[0;32mOK<1b>[0m
test-measlesmixingriskquarantine.R 19 tests <1b>[0;32mOK<1b>[0m
test-measlesmixingriskquarantine.R 20 tests <1b>[0;32mOK<1b>[0m
test-measlesmixingriskquarantine.R 21 tests <1b>[0;32mOK<1b>[0m
test-measlesmixingriskquarantine.R 22 tests <1b>[0;32mOK<1b>[0m
test-measlesmixingriskquarantine.R 23 tests <1b>[0;32mOK<1b>[0m
test-measlesmixingriskquarantine.R 24 tests <1b>[0;32mOK<1b>[0m
test-measlesmixingriskquarantine.R 25 tests <1b>[0;32mOK<1b>[0m
test-measlesmixingriskquarantine.R 26 tests <1b>[0;32mOK<1b>[0m <1b>[0;34m0.1s<1b>[0m
test-model-diagram.R.......... 0 tests
test-model-diagram.R.......... 0 tests
test-model-diagram.R.......... 0 tests
test-model-diagram.R.......... 0 tests
test-model-diagram.R.......... 1 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 2 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 3 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 4 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 5 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 6 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 7 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 8 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 9 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 10 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 11 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 12 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 12 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 13 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 14 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 15 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 16 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 17 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 18 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 18 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 19 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 19 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 20 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 21 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 22 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 23 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 24 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 25 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 25 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 26 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 27 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 28 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 29 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 30 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 31 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 31 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 32 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 32 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 33 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 34 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 35 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 36 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 37 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 38 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 39 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 40 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 41 tests <1b>[0;32mOK<1b>[0m <1b>[0;36m73ms<1b>[0m
test-model-methods.R.......... 0 tests
test-model-methods.R.......... 0 tests
test-model-methods.R.......... 0 tests
test-model-methods.R.......... 1 tests <1b>[0;32mOK<1b>[0m
test-model-methods.R.......... 2 tests <1b>[0;32mOK<1b>[0m
test-model-methods.R.......... 3 tests <1b>[0;31m1 fails<1b>[0m
test-model-methods.R.......... 4 tests <1b>[0;31m2 fails<1b>[0m
test-model-methods.R.......... 4 tests <1b>[0;31m2 fails<1b>[0m
test-model-methods.R.......... 5 tests <1b>[0;31m2 fails<1b>[0m
test-model-methods.R.......... 6 tests <1b>[0;31m2 fails<1b>[0m
test-model-methods.R.......... 7 tests <1b>[0;31m2 fails<1b>[0m
test-model-methods.R.......... 8 tests <1b>[0;31m2 fails<1b>[0m
test-model-methods.R.......... 9 tests <1b>[0;31m2 fails<1b>[0m <1b>[0;36m54ms<1b>[0m
test-multiple.R............... 0 tests
test-multiple.R............... 0 tests
test-multiple.R............... 0 tests
test-multiple.R............... 0 tests _________________________________________________________________________
|Running the model...
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| done.
|
test-multiple.R............... 0 tests
test-multiple.R............... 0 tests Starting multiple runs (50) using 2 thread(s)
_________________________________________________________________________
_________________________________________________________________________
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| done.
test-multiple.R............... 0 tests
test-multiple.R............... 0 tests
test-multiple.R............... 0 tests
test-multiple.R............... 0 tests
test-multiple.R............... 0 tests
test-multiple.R............... 1 tests <1b>[0;32mOK<1b>[0m
test-multiple.R............... 2 tests <1b>[0;32mOK<1b>[0m <1b>[0;34m3.5s<1b>[0m
test-seir.R................... 1 tests <1b>[0;32mOK<1b>[0m
test-seir.R................... 2 tests <1b>[0;32mOK<1b>[0m
test-seir.R................... 3 tests <1b>[0;32mOK<1b>[0m
test-seir.R................... 4 tests <1b>[0;32mOK<1b>[0m
test-seir.R................... 5 tests <1b>[0;32mOK<1b>[0m
test-seir.R................... 6 tests <1b>[0;32mOK<1b>[0m
test-seir.R................... 7 tests <1b>[0;32mOK<1b>[0m
test-seir.R................... 8 tests <1b>[0;32mOK<1b>[0m
test-seir.R................... 9 tests <1b>[0;32mOK<1b>[0m
test-seir.R................... 10 tests <1b>[0;32mOK<1b>[0m
test-seir.R................... 11 tests <1b>[0;32mOK<1b>[0m
test-seir.R................... 11 tests <1b>[0;32mOK<1b>[0m
test-seir.R................... 12 tests <1b>[0;32mOK<1b>[0m
test-seir.R................... 13 tests <1b>[0;32mOK<1b>[0m
test-seir.R................... 14 tests <1b>[0;32mOK<1b>[0m
test-seir.R................... 15 tests <1b>[0;32mOK<1b>[0m
test-seir.R................... 15 tests <1b>[0;32mOK<1b>[0m
test-seir.R................... 15 tests <1b>[0;32mOK<1b>[0m
test-seir.R................... 15 tests <1b>[0;32mOK<1b>[0m
test-seir.R................... 15 tests <1b>[0;32mOK<1b>[0m
test-seir.R................... 15 tests <1b>[0;32mOK<1b>[0m
test-seir.R................... 15 tests <1b>[0;32mOK<1b>[0m
test-seir.R................... 15 tests <1b>[0;32mOK<1b>[0m
test-seir.R................... 15 tests <1b>[0;32mOK<1b>[0m
test-seir.R................... 15 tests <1b>[0;32mOK<1b>[0m
test-seir.R................... 15 tests <1b>[0;32mOK<1b>[0m
test-seir.R................... 16 tests <1b>[0;32mOK<1b>[0m
test-seir.R................... 17 tests <1b>[0;32mOK<1b>[0m
test-seir.R................... 18 tests <1b>[0;32mOK<1b>[0m
test-seir.R................... 19 tests <1b>[0;32mOK<1b>[0m
test-seir.R................... 20 tests <1b>[0;32mOK<1b>[0m
test-seir.R................... 21 tests <1b>[0;32mOK<1b>[0m
test-seir.R................... 22 tests <1b>[0;32mOK<1b>[0m
test-seir.R................... 23 tests <1b>[0;32mOK<1b>[0m
test-seir.R................... 24 tests <1b>[0;32mOK<1b>[0m
test-seir.R................... 25 tests <1b>[0;32mOK<1b>[0m <1b>[0;36m71ms<1b>[0m
test-seirconn.R............... 0 tests
test-seirconn.R............... 0 tests
test-seirconn.R............... 0 tests
test-seirconn.R............... 0 tests
test-seirconn.R............... 0 tests
test-seirconn.R............... 0 tests
test-seirconn.R............... 0 tests
test-seirconn.R............... 1 tests <1b>[0;32mOK<1b>[0m
test-seirconn.R............... 2 tests <1b>[0;32mOK<1b>[0m
test-seirconn.R............... 3 tests <1b>[0;32mOK<1b>[0m
test-seirconn.R............... 4 tests <1b>[0;32mOK<1b>[0m
test-seirconn.R............... 4 tests <1b>[0;32mOK<1b>[0m
test-seirconn.R............... 4 tests <1b>[0;32mOK<1b>[0m
test-seirconn.R............... 4 tests <1b>[0;32mOK<1b>[0m
test-seirconn.R............... 4 tests <1b>[0;32mOK<1b>[0m
test-seirconn.R............... 4 tests <1b>[0;32mOK<1b>[0m
test-seirconn.R............... 4 tests <1b>[0;32mOK<1b>[0m
test-seirconn.R............... 5 tests <1b>[0;32mOK<1b>[0m
test-seirconn.R............... 6 tests <1b>[0;32mOK<1b>[0m
test-seirconn.R............... 7 tests <1b>[0;32mOK<1b>[0m
test-seirconn.R............... 8 tests <1b>[0;32mOK<1b>[0m
test-seirconn.R............... 9 tests <1b>[0;32mOK<1b>[0m
test-seirconn.R............... 10 tests <1b>[0;32mOK<1b>[0m
test-seirconn.R............... 11 tests <1b>[0;32mOK<1b>[0m
test-seirconn.R............... 12 tests <1b>[0;32mOK<1b>[0m
test-seirconn.R............... 13 tests <1b>[0;32mOK<1b>[0m
test-seirconn.R............... 14 tests <1b>[0;32mOK<1b>[0m
test-seirconn.R............... 15 tests <1b>[0;32mOK<1b>[0m
test-seirconn.R............... 16 tests <1b>[0;32mOK<1b>[0m
test-seirconn.R............... 17 tests <1b>[0;32mOK<1b>[0m
test-seirconn.R............... 18 tests <1b>[0;32mOK<1b>[0m <1b>[0;36m7ms<1b>[0m
test-seird.R.................. 0 tests
test-seird.R.................. 0 tests
test-seird.R.................. 0 tests
test-seird.R.................. 0 tests
test-seird.R.................. 0 tests
test-seird.R.................. 0 tests
test-seird.R.................. 1 tests <1b>[0;32mOK<1b>[0m
test-seird.R.................. 2 tests <1b>[0;32mOK<1b>[0m
test-seird.R.................. 3 tests <1b>[0;32mOK<1b>[0m
test-seird.R.................. 4 tests <1b>[0;32mOK<1b>[0m
test-seird.R.................. 4 tests <1b>[0;32mOK<1b>[0m
test-seird.R.................. 4 tests <1b>[0;32mOK<1b>[0m
test-seird.R.................. 4 tests <1b>[0;32mOK<1b>[0m
test-seird.R.................. 4 tests <1b>[0;32mOK<1b>[0m
test-seird.R.................. 4 tests <1b>[0;32mOK<1b>[0m
test-seird.R.................. 5 tests <1b>[0;32mOK<1b>[0m
test-seird.R.................. 6 tests <1b>[0;32mOK<1b>[0m
test-seird.R.................. 7 tests <1b>[0;32mOK<1b>[0m
test-seird.R.................. 8 tests <1b>[0;32mOK<1b>[0m
test-seird.R.................. 9 tests <1b>[0;32mOK<1b>[0m
test-seird.R.................. 10 tests <1b>[0;32mOK<1b>[0m
test-seird.R.................. 11 tests <1b>[0;32mOK<1b>[0m
test-seird.R.................. 12 tests <1b>[0;32mOK<1b>[0m
test-seird.R.................. 13 tests <1b>[0;32mOK<1b>[0m
test-seird.R.................. 14 tests <1b>[0;32mOK<1b>[0m
test-seird.R.................. 15 tests <1b>[0;32mOK<1b>[0m
test-seird.R.................. 16 tests <1b>[0;32mOK<1b>[0m <1b>[0;36m10ms<1b>[0m
test-seirdconn.R.............. 0 tests
test-seirdconn.R.............. 0 tests
test-seirdconn.R.............. 0 tests
test-seirdconn.R.............. 0 tests
test-seirdconn.R.............. 0 tests
test-seirdconn.R.............. 0 tests
test-seirdconn.R.............. 0 tests
test-seirdconn.R.............. 0 tests
test-seirdconn.R.............. 1 tests <1b>[0;32mOK<1b>[0m
test-seirdconn.R.............. 2 tests <1b>[0;32mOK<1b>[0m
test-seirdconn.R.............. 3 tests <1b>[0;32mOK<1b>[0m
test-seirdconn.R.............. 4 tests <1b>[0;32mOK<1b>[0m
test-seirdconn.R.............. 4 tests <1b>[0;32mOK<1b>[0m
test-seirdconn.R.............. 4 tests <1b>[0;32mOK<1b>[0m
test-seirdconn.R.............. 4 tests <1b>[0;32mOK<1b>[0m
test-seirdconn.R.............. 4 tests <1b>[0;32mOK<1b>[0m
test-seirdconn.R.............. 4 tests <1b>[0;32mOK<1b>[0m
test-seirdconn.R.............. 4 tests <1b>[0;32mOK<1b>[0m
test-seirdconn.R.............. 5 tests <1b>[0;32mOK<1b>[0m
test-seirdconn.R.............. 6 tests <1b>[0;32mOK<1b>[0m
test-seirdconn.R.............. 7 tests <1b>[0;32mOK<1b>[0m
test-seirdconn.R.............. 8 tests <1b>[0;32mOK<1b>[0m
test-seirdconn.R.............. 9 tests <1b>[0;32mOK<1b>[0m
test-seirdconn.R.............. 10 tests <1b>[0;32mOK<1b>[0m
test-seirdconn.R.............. 11 tests <1b>[0;32mOK<1b>[0m
test-seirdconn.R.............. 12 tests <1b>[0;32mOK<1b>[0m
test-seirdconn.R.............. 13 tests <1b>[0;32mOK<1b>[0m
test-seirdconn.R.............. 14 tests <1b>[0;32mOK<1b>[0m
test-seirdconn.R.............. 15 tests <1b>[0;32mOK<1b>[0m
test-seirdconn.R.............. 16 tests <1b>[0;32mOK<1b>[0m
test-seirdconn.R.............. 17 tests <1b>[0;32mOK<1b>[0m
test-seirdconn.R.............. 18 tests <1b>[0;32mOK<1b>[0m
test-seirdconn.R.............. 19 tests <1b>[0;32mOK<1b>[0m
test-seirdconn.R.............. 20 tests <1b>[0;32mOK<1b>[0m <1b>[0;36m13ms<1b>[0m
test-seirmixing.R............. 0 tests
test-seirmixing.R............. 0 tests
test-seirmixing.R............. 0 tests
test-seirmixing.R............. 0 tests
test-seirmixing.R............. 0 tests
test-seirmixing.R............. 0 tests
test-seirmixing.R............. 0 tests
test-seirmixing.R............. 0 tests _________________________________________________________________________
Running the model...
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| done.
test-seirmixing.R............. 0 tests ________________________________________________________________________________
________________________________________________________________________________
SIMULATION STUDY
Name of the model : Susceptible-Exposed-Infected-Removed (SEIR) with Mixing
Population size : 9000
Agents' data : (none)
Number of entities : 3
Days (duration) : 100 (of 100)
Number of viruses : 1
Last run elapsed t : 53.00ms
Last run speed : 16.95 million agents x day / second
Rewiring : off
Global events:
- Update infected individuals (runs daily)
Virus(es):
- Flu
Tool(s):
(none)
Model parameters:
- Avg. Incubation days : 0.0090
- Contact rate : 40.0000
- Prob. Recovery : 0.1000
- Prob. Transmission : 1.0000
Distribution of the population at time 100:
- (0) Susceptible : 8999 -> 6000
- (1) Exposed : 1 -> 0
- (2) Infected : 0 -> 0
- (3) Recovered : 0 -> 3000
Transition Probabilities:
- Susceptible 1.00 0.00 - -
- Exposed - - 1.00 -
- Infected - - 0.90 0.10
- Recovered - - - 1.00
test-seirmixing.R............. 0 tests
test-seirmixing.R............. 0 tests
test-seirmixing.R............. 0 tests
test-seirmixing.R............. 0 tests
test-seirmixing.R............. 0 tests
test-seirmixing.R............. 0 tests
test-seirmixing.R............. 0 tests
test-seirmixing.R............. 0 tests
test-seirmixing.R............. 0 tests
test-seirmixing.R............. 0 tests
test-seirmixing.R............. 0 tests
test-seirmixing.R............. 0 tests
test-seirmixing.R............. 0 tests
test-seirmixing.R............. 0 tests
test-seirmixing.R............. 0 tests
test-seirmixing.R............. 0 tests
test-seirmixing.R............. 0 tests
test-seirmixing.R............. 0 tests
test-seirmixing.R............. 0 tests
test-seirmixing.R............. 0 tests
test-seirmixing.R............. 0 tests
test-seirmixing.R............. 0 tests
test-seirmixing.R............. 0 tests
test-seirmixing.R............. 0 tests
test-seirmixing.R............. 1 tests <1b>[0;32mOK<1b>[0m
test-seirmixing.R............. 2 tests <1b>[0;32mOK<1b>[0m
test-seirmixing.R............. 3 tests <1b>[0;32mOK<1b>[0m
test-seirmixing.R............. 4 tests <1b>[0;32mOK<1b>[0m
test-seirmixing.R............. 5 tests <1b>[0;32mOK<1b>[0m
test-seirmixing.R............. 6 tests <1b>[0;32mOK<1b>[0m
test-seirmixing.R............. 7 tests <1b>[0;32mOK<1b>[0m
test-seirmixing.R............. 8 tests <1b>[0;32mOK<1b>[0m
test-seirmixing.R............. 9 tests <1b>[0;32mOK<1b>[0m
test-seirmixing.R............. 10 tests <1b>[0;32mOK<1b>[0m
test-seirmixing.R............. 11 tests <1b>[0;32mOK<1b>[0m
test-seirmixing.R............. 12 tests <1b>[0;32mOK<1b>[0m
test-seirmixing.R............. 13 tests <1b>[0;32mOK<1b>[0m
test-seirmixing.R............. 14 tests <1b>[0;32mOK<1b>[0m
test-seirmixing.R............. 15 tests <1b>[0;32mOK<1b>[0m
test-seirmixing.R............. 16 tests <1b>[0;32mOK<1b>[0m <1b>[0;34m0.2s<1b>[0m
test-seirmixingquarantine.R... 0 tests
test-seirmixingquarantine.R... 0 tests
test-seirmixingquarantine.R... 0 tests
test-seirmixingquarantine.R... 0 tests
test-seirmixingquarantine.R... 0 tests
test-seirmixingquarantine.R... 0 tests
test-seirmixingquarantine.R... 0 tests
test-seirmixingquarantine.R... 0 tests _________________________________________________________________________
Running the model...
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| done.
test-seirmixingquarantine.R... 0 tests ________________________________________________________________________________
________________________________________________________________________________
SIMULATION STUDY
Name of the model : SEIR with Mixing and Quarantine
Population size : 9000
Agents' data : (none)
Number of entities : 3
Days (duration) : 100 (of 100)
Number of viruses : 1
Last run elapsed t : 94.00ms
Last run speed : 9.49 million agents x day / second
Rewiring : off
Global events:
- Update infected individuals (runs daily)
Virus(es):
- Flu
Tool(s):
(none)
Model parameters:
- Avg. Incubation days : 0.0090
- Contact rate : 40.0000
- Contact tracing days prior : 3.0000
- Contact tracing success rate : 0.7000
- Days undetected : 3.0000
- Hospitalization period : 7.0000
- Hospitalization rate : 0.0500
- Isolation period : 7.0000
- Isolation willingness : 0.5000
- Prob. Recovery : 0.1000
- Prob. Transmission : 1.0000
- Quarantine period : 14.0000
- Quarantine willingness : 0.8000
Distribution of the population at time 100:
- ( 0) Susceptible : 8999 -> 6000
- ( 1) Exposed : 1 -> 0
- ( 2) Infected : 0 -> 0
- ( 3) Isolated : 0 -> 0
- ( 4) Detected Hospitalized : 0 -> 0
- ( 5) Quarantined Susceptible : 0 -> 0
- ( 6) Quarantined Exposed : 0 -> 0
- ( 7) Isolated Recovered : 0 -> 0
- ( 8) Hospitalized : 0 -> 0
- ( 9) Recovered : 0 -> 3000
Transition Probabilities:
- Susceptible 1.00 0.00 - - - - 0.00 - - -
- Exposed - - 0.92 0.08 - - - - - -
- Infected - - 0.73 0.11 0.02 - - 0.01 0.03 0.09
- Isolated - - 0.15 0.71 0.04 - - 0.08 0.01 0.02
- Detected Hospitalized - - - - 0.86 - - - - 0.14
- Quarantined Susceptible - - - - - - - - - -
- Quarantined Exposed - - - 1.00 - - - - - -
- Isolated Recovered - - - - - - - 0.72 - 0.28
- Hospitalized - - - - - - - - 0.85 0.15
- Recovered - - - - - - - - - 1.00
test-seirmixingquarantine.R... 0 tests
test-seirmixingquarantine.R... 0 tests
test-seirmixingquarantine.R... 0 tests
test-seirmixingquarantine.R... 0 tests
test-seirmixingquarantine.R... 0 tests
test-seirmixingquarantine.R... 0 tests
test-seirmixingquarantine.R... 0 tests
test-seirmixingquarantine.R... 0 tests
test-seirmixingquarantine.R... 0 tests
test-seirmixingquarantine.R... 0 tests
test-seirmixingquarantine.R... 0 tests
test-seirmixingquarantine.R... 0 tests
test-seirmixingquarantine.R... 0 tests
test-seirmixingquarantine.R... 0 tests
test-seirmixingquarantine.R... 0 tests
test-seirmixingquarantine.R... 0 tests
test-seirmixingquarantine.R... 0 tests
test-seirmixingquarantine.R... 0 tests
test-seirmixingquarantine.R... 1 tests <1b>[0;32mOK<1b>[0m
test-seirmixingquarantine.R... 2 tests <1b>[0;32mOK<1b>[0m
test-seirmixingquarantine.R... 3 tests <1b>[0;32mOK<1b>[0m
test-seirmixingquarantine.R... 4 tests <1b>[0;32mOK<1b>[0m
test-seirmixingquarantine.R... 5 tests <1b>[0;32mOK<1b>[0m
test-seirmixingquarantine.R... 6 tests <1b>[0;32mOK<1b>[0m
test-seirmixingquarantine.R... 7 tests <1b>[0;32mOK<1b>[0m
test-seirmixingquarantine.R... 8 tests <1b>[0;32mOK<1b>[0m
test-seirmixingquarantine.R... 9 tests <1b>[0;32mOK<1b>[0m
test-seirmixingquarantine.R... 10 tests <1b>[0;32mOK<1b>[0m
test-seirmixingquarantine.R... 11 tests <1b>[0;32mOK<1b>[0m
test-seirmixingquarantine.R... 12 tests <1b>[0;32mOK<1b>[0m
test-seirmixingquarantine.R... 13 tests <1b>[0;32mOK<1b>[0m
test-seirmixingquarantine.R... 14 tests <1b>[0;32mOK<1b>[0m
test-seirmixingquarantine.R... 15 tests <1b>[0;32mOK<1b>[0m
test-seirmixingquarantine.R... 16 tests <1b>[0;32mOK<1b>[0m
test-seirmixingquarantine.R... 17 tests <1b>[0;32mOK<1b>[0m
test-seirmixingquarantine.R... 18 tests <1b>[0;32mOK<1b>[0m
test-seirmixingquarantine.R... 19 tests <1b>[0;32mOK<1b>[0m <1b>[0;34m0.2s<1b>[0m
test-sir.R.................... 1 tests <1b>[0;32mOK<1b>[0m
test-sir.R.................... 2 tests <1b>[0;32mOK<1b>[0m
test-sir.R.................... 3 tests <1b>[0;32mOK<1b>[0m
test-sir.R.................... 4 tests <1b>[0;32mOK<1b>[0m
test-sir.R.................... 5 tests <1b>[0;32mOK<1b>[0m
test-sir.R.................... 6 tests <1b>[0;32mOK<1b>[0m
test-sir.R.................... 7 tests <1b>[0;32mOK<1b>[0m
test-sir.R.................... 8 tests <1b>[0;32mOK<1b>[0m
test-sir.R.................... 9 tests <1b>[0;32mOK<1b>[0m
test-sir.R.................... 9 tests <1b>[0;32mOK<1b>[0m
test-sir.R.................... 9 tests <1b>[0;32mOK<1b>[0m
test-sir.R.................... 10 tests <1b>[0;32mOK<1b>[0m
test-sir.R.................... 10 tests <1b>[0;32mOK<1b>[0m
test-sir.R.................... 10 tests <1b>[0;32mOK<1b>[0m
test-sir.R.................... 11 tests <1b>[0;32mOK<1b>[0m
test-sir.R.................... 11 tests <1b>[0;32mOK<1b>[0m
test-sir.R.................... 11 tests <1b>[0;32mOK<1b>[0m
test-sir.R.................... 11 tests <1b>[0;32mOK<1b>[0m
test-sir.R.................... 12 tests <1b>[0;32mOK<1b>[0m
test-sir.R.................... 12 tests <1b>[0;32mOK<1b>[0m
test-sir.R.................... 12 tests <1b>[0;32mOK<1b>[0m
test-sir.R.................... 12 tests <1b>[0;32mOK<1b>[0m
test-sir.R.................... 12 tests <1b>[0;32mOK<1b>[0m
test-sir.R.................... 12 tests <1b>[0;32mOK<1b>[0m
test-sir.R.................... 12 tests <1b>[0;32mOK<1b>[0m
test-sir.R.................... 12 tests <1b>[0;32mOK<1b>[0m
test-sir.R.................... 12 tests <1b>[0;32mOK<1b>[0m
test-sir.R.................... 12 tests <1b>[0;32mOK<1b>[0m
test-sir.R.................... 13 tests <1b>[0;32mOK<1b>[0m
test-sir.R.................... 14 tests <1b>[0;32mOK<1b>[0m
test-sir.R.................... 15 tests <1b>[0;32mOK<1b>[0m
test-sir.R.................... 16 tests <1b>[0;32mOK<1b>[0m
test-sir.R.................... 17 tests <1b>[0;32mOK<1b>[0m
test-sir.R.................... 18 tests <1b>[0;32mOK<1b>[0m
test-sir.R.................... 19 tests <1b>[0;32mOK<1b>[0m
test-sir.R.................... 20 tests <1b>[0;32mOK<1b>[0m <1b>[0;34m0.7s<1b>[0m
test-sirconn.R................ 1 tests <1b>[0;32mOK<1b>[0m
test-sirconn.R................ 2 tests <1b>[0;32mOK<1b>[0m
test-sirconn.R................ 3 tests <1b>[0;32mOK<1b>[0m
test-sirconn.R................ 4 tests <1b>[0;32mOK<1b>[0m
test-sirconn.R................ 5 tests <1b>[0;32mOK<1b>[0m
test-sirconn.R................ 6 tests <1b>[0;32mOK<1b>[0m
test-sirconn.R................ 7 tests <1b>[0;32mOK<1b>[0m
test-sirconn.R................ 8 tests <1b>[0;32mOK<1b>[0m
test-sirconn.R................ 9 tests <1b>[0;32mOK<1b>[0m
test-sirconn.R................ 9 tests <1b>[0;32mOK<1b>[0m
test-sirconn.R................ 9 tests <1b>[0;32mOK<1b>[0m
test-sirconn.R................ 9 tests <1b>[0;32mOK<1b>[0m
test-sirconn.R................ 10 tests <1b>[0;32mOK<1b>[0m
test-sirconn.R................ 10 tests <1b>[0;32mOK<1b>[0m
test-sirconn.R................ 10 tests <1b>[0;32mOK<1b>[0m
test-sirconn.R................ 10 tests <1b>[0;32mOK<1b>[0m
test-sirconn.R................ 11 tests <1b>[0;32mOK<1b>[0m
test-sirconn.R................ 12 tests <1b>[0;32mOK<1b>[0m
test-sirconn.R................ 12 tests <1b>[0;32mOK<1b>[0m
test-sirconn.R................ 12 tests <1b>[0;32mOK<1b>[0m
test-sirconn.R................ 12 tests <1b>[0;32mOK<1b>[0m
test-sirconn.R................ 12 tests <1b>[0;32mOK<1b>[0m
test-sirconn.R................ 12 tests <1b>[0;32mOK<1b>[0m
test-sirconn.R................ 12 tests <1b>[0;32mOK<1b>[0m
test-sirconn.R................ 12 tests <1b>[0;32mOK<1b>[0m
test-sirconn.R................ 12 tests <1b>[0;32mOK<1b>[0m
test-sirconn.R................ 12 tests <1b>[0;32mOK<1b>[0m
test-sirconn.R................ 12 tests <1b>[0;32mOK<1b>[0m
test-sirconn.R................ 12 tests <1b>[0;32mOK<1b>[0m
test-sirconn.R................ 12 tests <1b>[0;32mOK<1b>[0m
test-sirconn.R................ 13 tests <1b>[0;32mOK<1b>[0m
test-sirconn.R................ 14 tests <1b>[0;32mOK<1b>[0m
test-sirconn.R................ 15 tests <1b>[0;32mOK<1b>[0m
test-sirconn.R................ 16 tests <1b>[0;32mOK<1b>[0m
test-sirconn.R................ 17 tests <1b>[0;32mOK<1b>[0m
test-sirconn.R................ 18 tests <1b>[0;32mOK<1b>[0m <1b>[0;36m61ms<1b>[0m
test-sird.R................... 1 tests <1b>[0;32mOK<1b>[0m
test-sird.R................... 2 tests <1b>[0;32mOK<1b>[0m
test-sird.R................... 3 tests <1b>[0;32mOK<1b>[0m
test-sird.R................... 4 tests <1b>[0;32mOK<1b>[0m
test-sird.R................... 5 tests <1b>[0;32mOK<1b>[0m
test-sird.R................... 6 tests <1b>[0;32mOK<1b>[0m
test-sird.R................... 7 tests <1b>[0;32mOK<1b>[0m
test-sird.R................... 8 tests <1b>[0;32mOK<1b>[0m
test-sird.R................... 9 tests <1b>[0;32mOK<1b>[0m
test-sird.R................... 10 tests <1b>[0;32mOK<1b>[0m
test-sird.R................... 10 tests <1b>[0;32mOK<1b>[0m
test-sird.R................... 11 tests <1b>[0;32mOK<1b>[0m
test-sird.R................... 12 tests <1b>[0;32mOK<1b>[0m
test-sird.R................... 13 tests <1b>[0;32mOK<1b>[0m
test-sird.R................... 14 tests <1b>[0;32mOK<1b>[0m
test-sird.R................... 14 tests <1b>[0;32mOK<1b>[0m
test-sird.R................... 14 tests <1b>[0;32mOK<1b>[0m
test-sird.R................... 14 tests <1b>[0;32mOK<1b>[0m
test-sird.R................... 14 tests <1b>[0;32mOK<1b>[0m
test-sird.R................... 14 tests <1b>[0;32mOK<1b>[0m
test-sird.R................... 14 tests <1b>[0;32mOK<1b>[0m
test-sird.R................... 14 tests <1b>[0;32mOK<1b>[0m
test-sird.R................... 14 tests <1b>[0;32mOK<1b>[0m
test-sird.R................... 14 tests <1b>[0;32mOK<1b>[0m
test-sird.R................... 15 tests <1b>[0;32mOK<1b>[0m
test-sird.R................... 16 tests <1b>[0;32mOK<1b>[0m
test-sird.R................... 17 tests <1b>[0;32mOK<1b>[0m
test-sird.R................... 18 tests <1b>[0;32mOK<1b>[0m
test-sird.R................... 19 tests <1b>[0;32mOK<1b>[0m <1b>[0;36m31ms<1b>[0m
test-sirdconn.R............... 0 tests
test-sirdconn.R............... 0 tests
test-sirdconn.R............... 0 tests
test-sirdconn.R............... 0 tests
test-sirdconn.R............... 0 tests
test-sirdconn.R............... 0 tests
test-sirdconn.R............... 0 tests
test-sirdconn.R............... 1 tests <1b>[0;32mOK<1b>[0m
test-sirdconn.R............... 2 tests <1b>[0;32mOK<1b>[0m
test-sirdconn.R............... 3 tests <1b>[0;32mOK<1b>[0m
test-sirdconn.R............... 4 tests <1b>[0;32mOK<1b>[0m
test-sirdconn.R............... 4 tests <1b>[0;32mOK<1b>[0m
test-sirdconn.R............... 4 tests <1b>[0;32mOK<1b>[0m
test-sirdconn.R............... 4 tests <1b>[0;32mOK<1b>[0m
test-sirdconn.R............... 4 tests <1b>[0;32mOK<1b>[0m
test-sirdconn.R............... 4 tests <1b>[0;32mOK<1b>[0m
test-sirdconn.R............... 5 tests <1b>[0;32mOK<1b>[0m
test-sirdconn.R............... 6 tests <1b>[0;32mOK<1b>[0m
test-sirdconn.R............... 7 tests <1b>[0;32mOK<1b>[0m
test-sirdconn.R............... 8 tests <1b>[0;32mOK<1b>[0m
test-sirdconn.R............... 9 tests <1b>[0;32mOK<1b>[0m
test-sirdconn.R............... 10 tests <1b>[0;32mOK<1b>[0m
test-sirdconn.R............... 11 tests <1b>[0;32mOK<1b>[0m <1b>[0;36m4ms<1b>[0m
test-sirlogit.R............... 0 tests
test-sirlogit.R............... 0 tests
test-sirlogit.R............... 0 tests
test-sirlogit.R............... 0 tests
test-sirlogit.R............... 0 tests
test-sirlogit.R............... 0 tests
test-sirlogit.R............... 0 tests
test-sirlogit.R............... 0 tests
test-sirlogit.R............... 0 tests
test-sirlogit.R............... 0 tests
test-sirlogit.R............... 1 tests <1b>[0;32mOK<1b>[0m
test-sirlogit.R............... 2 tests <1b>[0;32mOK<1b>[0m
test-sirlogit.R............... 3 tests <1b>[0;32mOK<1b>[0m
test-sirlogit.R............... 3 tests <1b>[0;32mOK<1b>[0m
test-sirlogit.R............... 3 tests <1b>[0;32mOK<1b>[0m
test-sirlogit.R............... 3 tests <1b>[0;32mOK<1b>[0m
test-sirlogit.R............... 3 tests <1b>[0;32mOK<1b>[0m
test-sirlogit.R............... 3 tests <1b>[0;32mOK<1b>[0m
test-sirlogit.R............... 3 tests <1b>[0;32mOK<1b>[0m
test-sirlogit.R............... 3 tests <1b>[0;32mOK<1b>[0m
test-sirlogit.R............... 3 tests <1b>[0;32mOK<1b>[0m
test-sirlogit.R............... 3 tests <1b>[0;32mOK<1b>[0m
test-sirlogit.R............... 3 tests <1b>[0;32mOK<1b>[0m
test-sirlogit.R............... 3 tests <1b>[0;32mOK<1b>[0m
test-sirlogit.R............... 4 tests <1b>[0;32mOK<1b>[0m
test-sirlogit.R............... 5 tests <1b>[0;32mOK<1b>[0m
test-sirlogit.R............... 6 tests <1b>[0;32mOK<1b>[0m
test-sirlogit.R............... 7 tests <1b>[0;32mOK<1b>[0m
test-sirlogit.R............... 8 tests <1b>[0;32mOK<1b>[0m
test-sirlogit.R............... 9 tests <1b>[0;32mOK<1b>[0m
test-sirlogit.R............... 10 tests <1b>[0;32mOK<1b>[0m
test-sirlogit.R............... 11 tests <1b>[0;32mOK<1b>[0m
test-sirlogit.R............... 12 tests <1b>[0;32mOK<1b>[0m <1b>[0;36m30ms<1b>[0m
test-sirmixing.R.............. 0 tests
test-sirmixing.R.............. 0 tests
test-sirmixing.R.............. 0 tests
test-sirmixing.R.............. 0 tests
test-sirmixing.R.............. 0 tests
test-sirmixing.R.............. 0 tests
test-sirmixing.R.............. 0 tests
test-sirmixing.R.............. 1 tests <1b>[0;32mOK<1b>[0m
test-sirmixing.R.............. 2 tests <1b>[0;32mOK<1b>[0m
test-sirmixing.R.............. 3 tests <1b>[0;32mOK<1b>[0m
test-sirmixing.R.............. 4 tests <1b>[0;32mOK<1b>[0m
test-sirmixing.R.............. 4 tests <1b>[0;32mOK<1b>[0m
test-sirmixing.R.............. 4 tests <1b>[0;32mOK<1b>[0m
test-sirmixing.R.............. 4 tests <1b>[0;32mOK<1b>[0m
test-sirmixing.R.............. 4 tests <1b>[0;32mOK<1b>[0m
test-sirmixing.R.............. 4 tests <1b>[0;32mOK<1b>[0m
test-sirmixing.R.............. 4 tests <1b>[0;32mOK<1b>[0m
test-sirmixing.R.............. 4 tests <1b>[0;32mOK<1b>[0m
test-sirmixing.R.............. 5 tests <1b>[0;32mOK<1b>[0m
test-sirmixing.R.............. 6 tests <1b>[0;32mOK<1b>[0m
test-sirmixing.R.............. 7 tests <1b>[0;32mOK<1b>[0m
test-sirmixing.R.............. 8 tests <1b>[0;32mOK<1b>[0m
test-sirmixing.R.............. 9 tests <1b>[0;32mOK<1b>[0m
test-sirmixing.R.............. 10 tests <1b>[0;32mOK<1b>[0m
test-sirmixing.R.............. 11 tests <1b>[0;32mOK<1b>[0m <1b>[0;36m9ms<1b>[0m
test-sis.R.................... 1 tests <1b>[0;32mOK<1b>[0m
test-sis.R.................... 2 tests <1b>[0;32mOK<1b>[0m
test-sis.R.................... 3 tests <1b>[0;32mOK<1b>[0m
test-sis.R.................... 4 tests <1b>[0;32mOK<1b>[0m
test-sis.R.................... 5 tests <1b>[0;32mOK<1b>[0m
test-sis.R.................... 6 tests <1b>[0;32mOK<1b>[0m
test-sis.R.................... 7 tests <1b>[0;32mOK<1b>[0m
test-sis.R.................... 8 tests <1b>[0;32mOK<1b>[0m
test-sis.R.................... 9 tests <1b>[0;32mOK<1b>[0m
test-sis.R.................... 9 tests <1b>[0;32mOK<1b>[0m
test-sis.R.................... 9 tests <1b>[0;32mOK<1b>[0m
test-sis.R.................... 9 tests <1b>[0;32mOK<1b>[0m
test-sis.R.................... 9 tests <1b>[0;32mOK<1b>[0m
test-sis.R.................... 9 tests <1b>[0;32mOK<1b>[0m
test-sis.R.................... 9 tests <1b>[0;32mOK<1b>[0m
test-sis.R.................... 9 tests <1b>[0;32mOK<1b>[0m
test-sis.R.................... 9 tests <1b>[0;32mOK<1b>[0m
test-sis.R.................... 10 tests <1b>[0;32mOK<1b>[0m
test-sis.R.................... 11 tests <1b>[0;32mOK<1b>[0m
test-sis.R.................... 12 tests <1b>[0;32mOK<1b>[0m
test-sis.R.................... 13 tests <1b>[0;32mOK<1b>[0m <1b>[0;34m0.5s<1b>[0m
test-sisd.R................... 0 tests
test-sisd.R................... 0 tests
test-sisd.R................... 0 tests
test-sisd.R................... 0 tests
test-sisd.R................... 0 tests
test-sisd.R................... 1 tests <1b>[0;32mOK<1b>[0m
test-sisd.R................... 2 tests <1b>[0;32mOK<1b>[0m
test-sisd.R................... 3 tests <1b>[0;32mOK<1b>[0m
test-sisd.R................... 4 tests <1b>[0;32mOK<1b>[0m
test-sisd.R................... 4 tests <1b>[0;32mOK<1b>[0m
test-sisd.R................... 4 tests <1b>[0;32mOK<1b>[0m
test-sisd.R................... 4 tests <1b>[0;32mOK<1b>[0m
test-sisd.R................... 4 tests <1b>[0;32mOK<1b>[0m
test-sisd.R................... 5 tests <1b>[0;32mOK<1b>[0m
test-sisd.R................... 6 tests <1b>[0;32mOK<1b>[0m
test-sisd.R................... 7 tests <1b>[0;32mOK<1b>[0m
test-sisd.R................... 8 tests <1b>[0;32mOK<1b>[0m
test-sisd.R................... 9 tests <1b>[0;32mOK<1b>[0m <1b>[0;36m4ms<1b>[0m
test-surv.R................... 0 tests
test-surv.R................... 0 tests
test-surv.R................... 0 tests
test-surv.R................... 0 tests
test-surv.R................... 0 tests
test-surv.R................... 0 tests
test-surv.R................... 0 tests
test-surv.R................... 0 tests
test-surv.R................... 0 tests
test-surv.R................... 0 tests
test-surv.R................... 0 tests
test-surv.R................... 0 tests
test-surv.R................... 0 tests
test-surv.R................... 1 tests <1b>[0;32mOK<1b>[0m
test-surv.R................... 2 tests <1b>[0;32mOK<1b>[0m
test-surv.R................... 3 tests <1b>[0;32mOK<1b>[0m
test-surv.R................... 4 tests <1b>[0;32mOK<1b>[0m
test-surv.R................... 4 tests <1b>[0;32mOK<1b>[0m
test-surv.R................... 4 tests <1b>[0;32mOK<1b>[0m
test-surv.R................... 4 tests <1b>[0;32mOK<1b>[0m
test-surv.R................... 4 tests <1b>[0;32mOK<1b>[0m
test-surv.R................... 5 tests <1b>[0;32mOK<1b>[0m
test-surv.R................... 6 tests <1b>[0;32mOK<1b>[0m
test-surv.R................... 7 tests <1b>[0;32mOK<1b>[0m
test-surv.R................... 8 tests <1b>[0;32mOK<1b>[0m
test-surv.R................... 9 tests <1b>[0;32mOK<1b>[0m
test-surv.R................... 10 tests <1b>[0;32mOK<1b>[0m
test-surv.R................... 11 tests <1b>[0;32mOK<1b>[0m
test-surv.R................... 12 tests <1b>[0;32mOK<1b>[0m
test-surv.R................... 13 tests <1b>[0;32mOK<1b>[0m
test-surv.R................... 14 tests <1b>[0;32mOK<1b>[0m
test-surv.R................... 15 tests <1b>[0;32mOK<1b>[0m
test-surv.R................... 16 tests <1b>[0;32mOK<1b>[0m
test-surv.R................... 17 tests <1b>[0;32mOK<1b>[0m <1b>[0;36m7ms<1b>[0m
test-tool.R................... 0 tests
test-tool.R................... 1 tests <1b>[0;32mOK<1b>[0m
test-tool.R................... 2 tests <1b>[0;32mOK<1b>[0m
test-tool.R................... 3 tests <1b>[0;32mOK<1b>[0m
test-tool.R................... 4 tests <1b>[0;32mOK<1b>[0m
test-tool.R................... 5 tests <1b>[0;32mOK<1b>[0m
test-tool.R................... 5 tests <1b>[0;32mOK<1b>[0m
test-tool.R................... 6 tests <1b>[0;32mOK<1b>[0m
test-tool.R................... 7 tests <1b>[0;32mOK<1b>[0m
test-tool.R................... 8 tests <1b>[0;32mOK<1b>[0m
test-tool.R................... 8 tests <1b>[0;32mOK<1b>[0m
test-tool.R................... 9 tests <1b>[0;32mOK<1b>[0m
test-tool.R................... 10 tests <1b>[0;32mOK<1b>[0m
test-tool.R................... 11 tests <1b>[0;32mOK<1b>[0m
test-tool.R................... 12 tests <1b>[0;32mOK<1b>[0m
test-tool.R................... 13 tests <1b>[0;32mOK<1b>[0m
test-tool.R................... 14 tests <1b>[0;32mOK<1b>[0m
test-tool.R................... 15 tests <1b>[0;32mOK<1b>[0m
test-tool.R................... 16 tests <1b>[0;32mOK<1b>[0m
test-tool.R................... 17 tests <1b>[0;32mOK<1b>[0m
test-tool.R................... 18 tests <1b>[0;32mOK<1b>[0m <1b>[0;36m6ms<1b>[0m
test-virus.R.................. 1 tests <1b>[0;32mOK<1b>[0m
test-virus.R.................. 2 tests <1b>[0;32mOK<1b>[0m
test-virus.R.................. 3 tests <1b>[0;32mOK<1b>[0m
test-virus.R.................. 4 tests <1b>[0;32mOK<1b>[0m <1b>[0;36m2ms<1b>[0m
----- FAILED[xcpt]: test-model-methods.R<19--22>
call| expect_message(md_with_output <- draw_mermaid(model, output_file = "mermaid_diagram.txt"),
call| --> "Diagram written")
diff| No message was emitted
diff| Found 0 message(s), 0 warning(s), and 1 error(s):
diff|
diff| ERR: Could not open the file mermaid_diagram.txt for writing.
----- FAILED[data]: test-model-methods.R<25--25>
call| expect_true(file.exists("mermaid_diagram.txt"))
diff| Expected TRUE, got FALSE
Error: 2 out of 511 tests failed
In addition: Warning message:
In file.remove("mermaid_diagram.txt") :
cannot remove file 'mermaid_diagram.txt', reason 'Read-only file system'
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.10.0.0
Check: tests
Result: ERROR
Running ‘tinytest.R’ [33s/45s]
Running the tests in ‘tests/tinytest.R’ failed.
Complete output:
>
> if (requireNamespace("tinytest", quietly = TRUE)) {
+
+ test_tmat_matches_expected <- function(tmat) {
+ # Check for out of bounds values
+ tinytest::expect_false(any(tmat < 0))
+ tinytest::expect_false(any(tmat > 1))
+ }
+
+ tinytest::test_package("epiworldR")
+ }
Thank you for using epiworldR! Please consider citing it in your work.
You can find the citation information by running
citation("epiworldR")
test-agents-and-dist-virus-tool.R 0 tests
test-agents-and-dist-virus-tool.R 0 tests _________________________________________________________________________
Running the model...
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| done.
test-agents-and-dist-virus-tool.R 0 tests
test-agents-and-dist-virus-tool.R 0 tests
test-agents-and-dist-virus-tool.R 1 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 1 tests <1b>[0;32mOK<1b>[0m Starting multiple runs (100) using 2 thread(s)
_________________________________________________________________________
_________________________________________________________________________
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| done.
test-agents-and-dist-virus-tool.R 1 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 1 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 1 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 1 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 2 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 2 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 2 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 2 tests <1b>[0;32mOK<1b>[0m _________________________________________________________________________
Running the model...
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| done.
test-agents-and-dist-virus-tool.R 2 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 2 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 3 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 4 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 4 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 4 tests <1b>[0;32mOK<1b>[0m Starting multiple runs (100) using 2 thread(s)
_________________________________________________________________________
_________________________________________________________________________
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| done.
test-agents-and-dist-virus-tool.R 4 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 4 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 4 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 5 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 5 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 5 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 5 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 5 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 5 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 5 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 5 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 5 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 5 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 5 tests <1b>[0;32mOK<1b>[0m _________________________________________________________________________
Running the model...
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| done.
test-agents-and-dist-virus-tool.R 5 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 5 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 6 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 6 tests <1b>[0;32mOK<1b>[0m Starting multiple runs (100) using 2 thread(s)
_________________________________________________________________________
_________________________________________________________________________
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| done.
test-agents-and-dist-virus-tool.R 6 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 6 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 6 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 6 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 7 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 7 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 7 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 7 tests <1b>[0;32mOK<1b>[0m _________________________________________________________________________
Running the model...
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| done.
test-agents-and-dist-virus-tool.R 7 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 7 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 8 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 9 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 9 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 9 tests <1b>[0;32mOK<1b>[0m Starting multiple runs (100) using 2 thread(s)
_________________________________________________________________________
_________________________________________________________________________
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| done.
test-agents-and-dist-virus-tool.R 9 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 9 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 9 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 10 tests <1b>[0;32mOK<1b>[0m <1b>[0;34m4.8s<1b>[0m
test-diffnet.R................ 0 tests
test-diffnet.R................ 0 tests
test-diffnet.R................ 0 tests
test-diffnet.R................ 0 tests
test-diffnet.R................ 0 tests
test-diffnet.R................ 0 tests
test-diffnet.R................ 0 tests
test-diffnet.R................ 1 tests <1b>[0;32mOK<1b>[0m
test-diffnet.R................ 2 tests <1b>[0;32mOK<1b>[0m
test-diffnet.R................ 3 tests <1b>[0;32mOK<1b>[0m
test-diffnet.R................ 4 tests <1b>[0;32mOK<1b>[0m
test-diffnet.R................ 4 tests <1b>[0;32mOK<1b>[0m
test-diffnet.R................ 4 tests <1b>[0;32mOK<1b>[0m
test-diffnet.R................ 4 tests <1b>[0;32mOK<1b>[0m
test-diffnet.R................ 4 tests <1b>[0;32mOK<1b>[0m
test-diffnet.R................ 4 tests <1b>[0;32mOK<1b>[0m
test-diffnet.R................ 4 tests <1b>[0;32mOK<1b>[0m
test-diffnet.R................ 4 tests <1b>[0;32mOK<1b>[0m
test-diffnet.R................ 4 tests <1b>[0;32mOK<1b>[0m
test-diffnet.R................ 4 tests <1b>[0;32mOK<1b>[0m
test-diffnet.R................ 4 tests <1b>[0;32mOK<1b>[0m
test-diffnet.R................ 4 tests <1b>[0;32mOK<1b>[0m
test-diffnet.R................ 4 tests <1b>[0;32mOK<1b>[0m
test-diffnet.R................ 4 tests <1b>[0;32mOK<1b>[0m
test-diffnet.R................ 4 tests <1b>[0;32mOK<1b>[0m
test-diffnet.R................ 5 tests <1b>[0;32mOK<1b>[0m
test-diffnet.R................ 6 tests <1b>[0;32mOK<1b>[0m
test-diffnet.R................ 7 tests <1b>[0;32mOK<1b>[0m
test-diffnet.R................ 8 tests <1b>[0;32mOK<1b>[0m
test-diffnet.R................ 9 tests <1b>[0;32mOK<1b>[0m
test-diffnet.R................ 10 tests <1b>[0;32mOK<1b>[0m
test-diffnet.R................ 11 tests <1b>[0;32mOK<1b>[0m
test-diffnet.R................ 12 tests <1b>[0;32mOK<1b>[0m <1b>[0;36m18ms<1b>[0m
test-get.R.................... 0 tests
test-get.R.................... 0 tests
test-get.R.................... 1 tests <1b>[0;32mOK<1b>[0m
test-get.R.................... 2 tests <1b>[0;32mOK<1b>[0m
test-get.R.................... 3 tests <1b>[0;32mOK<1b>[0m
test-get.R.................... 4 tests <1b>[0;32mOK<1b>[0m
test-get.R.................... 5 tests <1b>[0;32mOK<1b>[0m
test-get.R.................... 6 tests <1b>[0;32mOK<1b>[0m
test-get.R.................... 6 tests <1b>[0;32mOK<1b>[0m <1b>[0;36m12ms<1b>[0m
test-lfmcmc.R................. 0 tests
test-lfmcmc.R................. 0 tests
test-lfmcmc.R................. 0 tests
test-lfmcmc.R................. 0 tests
test-lfmcmc.R................. 0 tests
test-lfmcmc.R................. 1 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 2 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 3 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 4 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 5 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 5 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 6 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 6 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 6 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 6 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 6 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 7 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 8 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 9 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 10 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 10 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 10 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 10 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 11 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 12 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 13 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 14 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 15 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 16 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 17 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 18 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 19 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 20 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 21 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 22 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 22 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 23 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 24 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 25 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 26 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 26 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 27 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 28 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 29 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 30 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 31 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 32 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 33 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 34 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 35 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 36 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 37 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 38 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 39 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 39 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 40 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 40 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 40 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 40 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 41 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 42 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 43 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 44 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 45 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 46 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 47 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 47 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 47 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 47 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 47 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 47 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 48 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 49 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 50 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 51 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 52 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 52 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 52 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 52 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 52 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 52 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 52 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 52 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 52 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 52 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 52 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 52 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 53 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 53 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 53 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 54 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 55 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 56 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 57 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 58 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 59 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 60 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 61 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 62 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 63 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 64 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 65 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 66 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 67 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 68 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 69 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 70 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 71 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 72 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 73 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 74 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 75 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 76 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 77 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 78 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 79 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 80 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 81 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 82 tests <1b>[0;32mOK<1b>[0m <1b>[0;34m24.4s<1b>[0m
test-measles-quarantine-errors.R 0 tests
test-measles-quarantine-errors.R 1 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 2 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 2 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 3 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 4 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 5 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 6 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 7 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 8 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 9 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 9 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 9 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 9 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 9 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 9 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 10 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 11 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 12 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 13 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 14 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 15 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 16 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 17 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 18 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 19 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 20 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 21 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 22 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 23 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 24 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 25 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 26 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 27 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 28 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 29 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 30 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 31 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 32 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 33 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 34 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 35 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 36 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 37 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 38 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 39 tests <1b>[0;32mOK<1b>[0m <1b>[0;36m80ms<1b>[0m
test-measles-quarantine-math.R 0 tests Starting multiple runs (200) using 2 thread(s)
_________________________________________________________________________
_________________________________________________________________________
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| done.
----- PASSED : test-measles-quarantine-math.R<4--39>
call| expect_equal(r0_obs, R0, tolerance = 0.1)
Starting multiple runs (200) using 2 thread(s)
_________________________________________________________________________
_________________________________________________________________________
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| done.
----- PASSED : test-measles-quarantine-math.R<4--39>
call| expect_equal(r0_obs, R0, tolerance = 0.1)
Starting multiple runs (200) using 2 thread(s)
_________________________________________________________________________
_________________________________________________________________________
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| done.
----- PASSED : test-measles-quarantine-math.R<4--39>
call| expect_equal(r0_obs, R0, tolerance = 0.1)
test-measles-quarantine-math.R 3 tests <1b>[0;32mOK<1b>[0m <1b>[0;34m3.8s<1b>[0m
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests _________________________________________________________________________
Running the model...
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| done.
test-measlesmixing.R.......... 0 tests ________________________________________________________________________________
________________________________________________________________________________
SIMULATION STUDY
Name of the model : Measles with Mixing and Quarantine
Population size : 9000
Agents' data : (none)
Number of entities : 3
Days (duration) : 100 (of 100)
Number of viruses : 1
Last run elapsed t : 47.00ms
Last run speed : 19.13 million agents x day / second
Rewiring : off
Global events:
- Update infected individuals (runs daily)
Virus(es):
- Measles
Tool(s):
- Vaccine
Model parameters:
- (IGNORED) Vax improved recovery : 0.8000
- Contact rate : 15.0000
- Contact tracing days prior : 4.0000
- Contact tracing success rate : 0.8000
- Days undetected : 2.0000
- Hospitalization period : 10.0000
- Hospitalization rate : 0.1000
- Incubation period : 10.0000
- Isolation period : 10.0000
- Isolation willingness : 0.8000
- Prodromal period : 3.0000
- Quarantine period : 14.0000
- Quarantine willingness : 0.9000
- Rash period : 7.0000
- Transmission rate : 0.9000
- Vaccination rate : 0.9500
- Vax efficacy : 0.9700
Distribution of the population at time 100:
- ( 0) Susceptible : 8999 -> 8999
- ( 1) Exposed : 1 -> 0
- ( 2) Prodromal : 0 -> 0
- ( 3) Rash : 0 -> 0
- ( 4) Isolated : 0 -> 0
- ( 5) Isolated Recovered : 0 -> 0
- ( 6) Detected Hospitalized : 0 -> 0
- ( 7) Quarantined Exposed : 0 -> 0
- ( 8) Quarantined Susceptible : 0 -> 0
- ( 9) Quarantined Prodromal : 0 -> 0
- (10) Quarantined Recovered : 0 -> 0
- (11) Hospitalized : 0 -> 0
- (12) Recovered : 0 -> 1
Transition Probabilities:
- Susceptible 1.00 0.00 - - - - - - - - - - -
- Exposed - 0.96 0.04 - - - - - - - - - -
- Prodromal - - - 1.00 - - - - - - - - -
- Rash - - - - - 1.00 - - - - - - -
- Isolated - - - - - - - - - - - - -
- Isolated Recovered - - - - - 0.89 - - - - - - 0.11
- Detected Hospitalized - - - - - - - - - - - - -
- Quarantined Exposed - - - - - - - - - - - - -
- Quarantined Susceptible - - - - - - - - - - - - -
- Quarantined Prodromal - - - - - - - - - - - - -
- Quarantined Recovered - - - - - - - - - - - - -
- Hospitalized - - - - - - - - - - - - -
- Recovered - - - - - - - - - - - - 1.00
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 1 tests <1b>[0;32mOK<1b>[0m
test-measlesmixing.R.......... 2 tests <1b>[0;32mOK<1b>[0m
test-measlesmixing.R.......... 3 tests <1b>[0;32mOK<1b>[0m
test-measlesmixing.R.......... 4 tests <1b>[0;32mOK<1b>[0m
test-measlesmixing.R.......... 5 tests <1b>[0;32mOK<1b>[0m
test-measlesmixing.R.......... 6 tests <1b>[0;32mOK<1b>[0m
test-measlesmixing.R.......... 7 tests <1b>[0;32mOK<1b>[0m
test-measlesmixing.R.......... 8 tests <1b>[0;32mOK<1b>[0m <1b>[0;34m0.2s<1b>[0m
test-measlesmixingriskquarantine-multiple.R 0 tests
test-measlesmixingriskquarantine-multiple.R 0 tests
test-measlesmixingriskquarantine-multiple.R 0 tests
test-measlesmixingriskquarantine-multiple.R 0 tests
test-measlesmixingriskquarantine-multiple.R 0 tests
test-measlesmixingriskquarantine-multiple.R 0 tests
test-measlesmixingriskquarantine-multiple.R 0 tests
test-measlesmixingriskquarantine-multiple.R 0 tests
test-measlesmixingriskquarantine-multiple.R 0 tests
test-measlesmixingriskquarantine-multiple.R 0 tests Starting multiple runs (50) using 2 thread(s)
_________________________________________________________________________
_________________________________________________________________________
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| done.
test-measlesmixingriskquarantine-multiple.R 0 tests Starting multiple runs (50) using 2 thread(s)
_________________________________________________________________________
_________________________________________________________________________
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| done.
test-measlesmixingriskquarantine-multiple.R 0 tests Starting multiple runs (50) using 2 thread(s)
_________________________________________________________________________
_________________________________________________________________________
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| done.
test-measlesmixingriskquarantine-multiple.R 0 tests Starting multiple runs (50) using 2 thread(s)
_________________________________________________________________________
_________________________________________________________________________
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| done.
test-measlesmixingriskquarantine-multiple.R 0 tests Starting multiple runs (50) using 2 thread(s)
_________________________________________________________________________
_________________________________________________________________________
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| done.
test-measlesmixingriskquarantine-multiple.R 0 tests
test-measlesmixingriskquarantine-multiple.R 1 tests <1b>[0;32mOK<1b>[0m
test-measlesmixingriskquarantine-multiple.R 2 tests <1b>[0;32mOK<1b>[0m
test-measlesmixingriskquarantine-multiple.R 3 tests <1b>[0;32mOK<1b>[0m
test-measlesmixingriskquarantine-multiple.R 4 tests <1b>[0;32mOK<1b>[0m
test-measlesmixingriskquarantine-multiple.R 5 tests <1b>[0;32mOK<1b>[0m
test-measlesmixingriskquarantine-multiple.R 6 tests <1b>[0;32mOK<1b>[0m
test-measlesmixingriskquarantine-multiple.R 7 tests <1b>[0;32mOK<1b>[0m <1b>[0;34m2.4s<1b>[0m
test-measlesmixingriskquarantine.R 0 tests
test-measlesmixingriskquarantine.R 0 tests
test-measlesmixingriskquarantine.R 0 tests
test-measlesmixingriskquarantine.R 0 tests
test-measlesmixingriskquarantine.R 0 tests
test-measlesmixingriskquarantine.R 0 tests
test-measlesmixingriskquarantine.R 0 tests
test-measlesmixingriskquarantine.R 0 tests _________________________________________________________________________
Running the model...
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| done.
test-measlesmixingriskquarantine.R 0 tests ________________________________________________________________________________
________________________________________________________________________________
SIMULATION STUDY
Name of the model : Measles with Mixing and Risk-based Quarantine
Population size : 9000
Agents' data : (none)
Number of entities : 3
Days (duration) : 100 (of 100)
Number of viruses : 1
Last run elapsed t : 109.00ms
Last run speed : 8.25 million agents x day / second
Rewiring : off
Global events:
- Update infected individuals (runs daily)
Virus(es):
- Measles
Tool(s):
- Vaccine
Model parameters:
- Contact rate : 15.0000
- Contact tracing days prior : 4.0000
- Contact tracing success rate : 0.8000
- Days undetected : 2.0000
- Detection rate quarantine : 0.5000
- Hospitalization period : 10.0000
- Hospitalization rate : 0.1000
- Incubation period : 10.0000
- Isolation period : 10.0000
- Isolation willingness : 0.8000
- Prodromal period : 3.0000
- Quarantine period high : 21.0000
- Quarantine period low : 7.0000
- Quarantine period medium : 14.0000
- Quarantine willingness : 0.9000
- Rash period : 7.0000
- Transmission rate : 0.9000
- Vaccination rate : 0.9500
- Vax efficacy : 0.9700
Distribution of the population at time 100:
- ( 0) Susceptible : 8999 -> 8999
- ( 1) Exposed : 1 -> 0
- ( 2) Prodromal : 0 -> 0
- ( 3) Rash : 0 -> 0
- ( 4) Isolated : 0 -> 0
- ( 5) Isolated Recovered : 0 -> 0
- ( 6) Detected Hospitalized : 0 -> 0
- ( 7) Quarantined Exposed : 0 -> 0
- ( 8) Quarantined Susceptible : 0 -> 0
- ( 9) Quarantined Prodromal : 0 -> 0
- (10) Quarantined Recovered : 0 -> 0
- (11) Hospitalized : 0 -> 0
- (12) Recovered : 0 -> 1
Transition Probabilities:
- Susceptible 1.00 0.00 - - - - - - 0.00 - - - -
- Exposed - 0.96 0.04 - - - - - - - - - -
- Prodromal - - - 1.00 - - - - - - - - -
- Rash - - - - - 1.00 - - - - - - -
- Isolated - - - - - - - - - - - - -
- Isolated Recovered - - - - - 0.89 - - - - - - 0.11
- Detected Hospitalized - - - - - - - - - - - - -
- Quarantined Exposed - - - - - - - - - - - - -
- Quarantined Susceptible 0.09 - - - - - - - 0.91 - - - -
- Quarantined Prodromal - - - - - - - - - - - - -
- Quarantined Recovered - - - - - - - - - - - - -
- Hospitalized - - - - - - - - - - - - -
- Recovered - - - - - - - - - - - - 1.00
test-measlesmixingriskquarantine.R 0 tests
test-measlesmixingriskquarantine.R 0 tests
test-measlesmixingriskquarantine.R 0 tests
test-measlesmixingriskquarantine.R 0 tests
test-measlesmixingriskquarantine.R 0 tests
test-measlesmixingriskquarantine.R 0 tests
test-measlesmixingriskquarantine.R 0 tests
test-measlesmixingriskquarantine.R 0 tests
test-measlesmixingriskquarantine.R 0 tests
test-measlesmixingriskquarantine.R 0 tests
test-measlesmixingriskquarantine.R 0 tests
test-measlesmixingriskquarantine.R 0 tests
test-measlesmixingriskquarantine.R 0 tests
test-measlesmixingriskquarantine.R 0 tests
test-measlesmixingriskquarantine.R 0 tests
test-measlesmixingriskquarantine.R 0 tests
test-measlesmixingriskquarantine.R 1 tests <1b>[0;32mOK<1b>[0m
test-measlesmixingriskquarantine.R 2 tests <1b>[0;32mOK<1b>[0m
test-measlesmixingriskquarantine.R 3 tests <1b>[0;32mOK<1b>[0m
test-measlesmixingriskquarantine.R 4 tests <1b>[0;32mOK<1b>[0m
test-measlesmixingriskquarantine.R 5 tests <1b>[0;32mOK<1b>[0m
test-measlesmixingriskquarantine.R 6 tests <1b>[0;32mOK<1b>[0m
test-measlesmixingriskquarantine.R 7 tests <1b>[0;32mOK<1b>[0m
test-measlesmixingriskquarantine.R 8 tests <1b>[0;32mOK<1b>[0m
test-measlesmixingriskquarantine.R 9 tests <1b>[0;32mOK<1b>[0m
test-measlesmixingriskquarantine.R 10 tests <1b>[0;32mOK<1b>[0m
test-measlesmixingriskquarantine.R 11 tests <1b>[0;32mOK<1b>[0m
test-measlesmixingriskquarantine.R 12 tests <1b>[0;32mOK<1b>[0m
test-measlesmixingriskquarantine.R 13 tests <1b>[0;32mOK<1b>[0m
test-measlesmixingriskquarantine.R 14 tests <1b>[0;32mOK<1b>[0m
test-measlesmixingriskquarantine.R 15 tests <1b>[0;32mOK<1b>[0m
test-measlesmixingriskquarantine.R 16 tests <1b>[0;32mOK<1b>[0m
test-measlesmixingriskquarantine.R 17 tests <1b>[0;32mOK<1b>[0m
test-measlesmixingriskquarantine.R 18 tests <1b>[0;32mOK<1b>[0m
test-measlesmixingriskquarantine.R 19 tests <1b>[0;32mOK<1b>[0m
test-measlesmixingriskquarantine.R 20 tests <1b>[0;32mOK<1b>[0m
test-measlesmixingriskquarantine.R 21 tests <1b>[0;32mOK<1b>[0m
test-measlesmixingriskquarantine.R 22 tests <1b>[0;32mOK<1b>[0m
test-measlesmixingriskquarantine.R 23 tests <1b>[0;32mOK<1b>[0m
test-measlesmixingriskquarantine.R 24 tests <1b>[0;32mOK<1b>[0m
test-measlesmixingriskquarantine.R 25 tests <1b>[0;32mOK<1b>[0m
test-measlesmixingriskquarantine.R 26 tests <1b>[0;32mOK<1b>[0m <1b>[0;34m0.2s<1b>[0m
test-model-diagram.R.......... 0 tests
test-model-diagram.R.......... 0 tests
test-model-diagram.R.......... 0 tests
test-model-diagram.R.......... 0 tests
test-model-diagram.R.......... 1 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 2 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 3 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 4 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 5 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 6 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 7 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 8 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 9 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 10 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 11 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 12 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 12 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 13 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 14 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 15 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 16 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 17 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 18 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 18 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 19 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 19 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 20 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 21 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 22 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 23 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 24 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 25 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 25 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 26 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 27 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 28 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 29 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 30 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 31 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 31 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 32 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 32 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 33 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 34 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 35 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 36 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 37 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 38 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 39 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 40 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 41 tests <1b>[0;32mOK<1b>[0m <1b>[0;34m0.1s<1b>[0m
test-model-methods.R.......... 0 tests
test-model-methods.R.......... 0 tests
test-model-methods.R.......... 0 tests
test-model-methods.R.......... 1 tests <1b>[0;32mOK<1b>[0m
test-model-methods.R.......... 2 tests <1b>[0;32mOK<1b>[0m
test-model-methods.R.......... 3 tests <1b>[0;31m1 fails<1b>[0m
test-model-methods.R.......... 4 tests <1b>[0;31m2 fails<1b>[0m
test-model-methods.R.......... 4 tests <1b>[0;31m2 fails<1b>[0m
test-model-methods.R.......... 5 tests <1b>[0;31m2 fails<1b>[0m
test-model-methods.R.......... 6 tests <1b>[0;31m2 fails<1b>[0m
test-model-methods.R.......... 7 tests <1b>[0;31m2 fails<1b>[0m
test-model-methods.R.......... 8 tests <1b>[0;31m2 fails<1b>[0m
test-model-methods.R.......... 9 tests <1b>[0;31m2 fails<1b>[0m <1b>[0;36m73ms<1b>[0m
test-multiple.R............... 0 tests
test-multiple.R............... 0 tests
test-multiple.R............... 0 tests
test-multiple.R............... 0 tests _________________________________________________________________________
|Running the model...
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| done.
|
test-multiple.R............... 0 tests
test-multiple.R............... 0 tests Starting multiple runs (50) using 2 thread(s)
_________________________________________________________________________
_________________________________________________________________________
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| done.
test-multiple.R............... 0 tests
test-multiple.R............... 0 tests
test-multiple.R............... 0 tests
test-multiple.R............... 0 tests
test-multiple.R............... 0 tests
test-multiple.R............... 1 tests <1b>[0;32mOK<1b>[0m
test-multiple.R............... 2 tests <1b>[0;32mOK<1b>[0m <1b>[0;34m5.0s<1b>[0m
test-seir.R................... 1 tests <1b>[0;32mOK<1b>[0m
test-seir.R................... 2 tests <1b>[0;32mOK<1b>[0m
test-seir.R................... 3 tests <1b>[0;32mOK<1b>[0m
test-seir.R................... 4 tests <1b>[0;32mOK<1b>[0m
test-seir.R................... 5 tests <1b>[0;32mOK<1b>[0m
test-seir.R................... 6 tests <1b>[0;32mOK<1b>[0m
test-seir.R................... 7 tests <1b>[0;32mOK<1b>[0m
test-seir.R................... 8 tests <1b>[0;32mOK<1b>[0m
test-seir.R................... 9 tests <1b>[0;32mOK<1b>[0m
test-seir.R................... 10 tests <1b>[0;32mOK<1b>[0m
test-seir.R................... 11 tests <1b>[0;32mOK<1b>[0m
test-seir.R................... 11 tests <1b>[0;32mOK<1b>[0m
test-seir.R................... 12 tests <1b>[0;32mOK<1b>[0m
test-seir.R................... 13 tests <1b>[0;32mOK<1b>[0m
test-seir.R................... 14 tests <1b>[0;32mOK<1b>[0m
test-seir.R................... 15 tests <1b>[0;32mOK<1b>[0m
test-seir.R................... 15 tests <1b>[0;32mOK<1b>[0m
test-seir.R................... 15 tests <1b>[0;32mOK<1b>[0m
test-seir.R................... 15 tests <1b>[0;32mOK<1b>[0m
test-seir.R................... 15 tests <1b>[0;32mOK<1b>[0m
test-seir.R................... 15 tests <1b>[0;32mOK<1b>[0m
test-seir.R................... 15 tests <1b>[0;32mOK<1b>[0m
test-seir.R................... 15 tests <1b>[0;32mOK<1b>[0m
test-seir.R................... 15 tests <1b>[0;32mOK<1b>[0m
test-seir.R................... 15 tests <1b>[0;32mOK<1b>[0m
test-seir.R................... 15 tests <1b>[0;32mOK<1b>[0m
test-seir.R................... 16 tests <1b>[0;32mOK<1b>[0m
test-seir.R................... 17 tests <1b>[0;32mOK<1b>[0m
test-seir.R................... 18 tests <1b>[0;32mOK<1b>[0m
test-seir.R................... 19 tests <1b>[0;32mOK<1b>[0m
test-seir.R................... 20 tests <1b>[0;32mOK<1b>[0m
test-seir.R................... 21 tests <1b>[0;32mOK<1b>[0m
test-seir.R................... 22 tests <1b>[0;32mOK<1b>[0m
test-seir.R................... 23 tests <1b>[0;32mOK<1b>[0m
test-seir.R................... 24 tests <1b>[0;32mOK<1b>[0m
test-seir.R................... 25 tests <1b>[0;32mOK<1b>[0m <1b>[0;34m0.2s<1b>[0m
test-seirconn.R............... 0 tests
test-seirconn.R............... 0 tests
test-seirconn.R............... 0 tests
test-seirconn.R............... 0 tests
test-seirconn.R............... 0 tests
test-seirconn.R............... 0 tests
test-seirconn.R............... 0 tests
test-seirconn.R............... 1 tests <1b>[0;32mOK<1b>[0m
test-seirconn.R............... 2 tests <1b>[0;32mOK<1b>[0m
test-seirconn.R............... 3 tests <1b>[0;32mOK<1b>[0m
test-seirconn.R............... 4 tests <1b>[0;32mOK<1b>[0m
test-seirconn.R............... 4 tests <1b>[0;32mOK<1b>[0m
test-seirconn.R............... 4 tests <1b>[0;32mOK<1b>[0m
test-seirconn.R............... 4 tests <1b>[0;32mOK<1b>[0m
test-seirconn.R............... 4 tests <1b>[0;32mOK<1b>[0m
test-seirconn.R............... 4 tests <1b>[0;32mOK<1b>[0m
test-seirconn.R............... 4 tests <1b>[0;32mOK<1b>[0m
test-seirconn.R............... 5 tests <1b>[0;32mOK<1b>[0m
test-seirconn.R............... 6 tests <1b>[0;32mOK<1b>[0m
test-seirconn.R............... 7 tests <1b>[0;32mOK<1b>[0m
test-seirconn.R............... 8 tests <1b>[0;32mOK<1b>[0m
test-seirconn.R............... 9 tests <1b>[0;32mOK<1b>[0m
test-seirconn.R............... 10 tests <1b>[0;32mOK<1b>[0m
test-seirconn.R............... 11 tests <1b>[0;32mOK<1b>[0m
test-seirconn.R............... 12 tests <1b>[0;32mOK<1b>[0m
test-seirconn.R............... 13 tests <1b>[0;32mOK<1b>[0m
test-seirconn.R............... 14 tests <1b>[0;32mOK<1b>[0m
test-seirconn.R............... 15 tests <1b>[0;32mOK<1b>[0m
test-seirconn.R............... 16 tests <1b>[0;32mOK<1b>[0m
test-seirconn.R............... 17 tests <1b>[0;32mOK<1b>[0m
test-seirconn.R............... 18 tests <1b>[0;32mOK<1b>[0m <1b>[0;36m26ms<1b>[0m
test-seird.R.................. 0 tests
test-seird.R.................. 0 tests
test-seird.R.................. 0 tests
test-seird.R.................. 0 tests
test-seird.R.................. 0 tests
test-seird.R.................. 0 tests
test-seird.R.................. 1 tests <1b>[0;32mOK<1b>[0m
test-seird.R.................. 2 tests <1b>[0;32mOK<1b>[0m
test-seird.R.................. 3 tests <1b>[0;32mOK<1b>[0m
test-seird.R.................. 4 tests <1b>[0;32mOK<1b>[0m
test-seird.R.................. 4 tests <1b>[0;32mOK<1b>[0m
test-seird.R.................. 4 tests <1b>[0;32mOK<1b>[0m
test-seird.R.................. 4 tests <1b>[0;32mOK<1b>[0m
test-seird.R.................. 4 tests <1b>[0;32mOK<1b>[0m
test-seird.R.................. 4 tests <1b>[0;32mOK<1b>[0m
test-seird.R.................. 5 tests <1b>[0;32mOK<1b>[0m
test-seird.R.................. 6 tests <1b>[0;32mOK<1b>[0m
test-seird.R.................. 7 tests <1b>[0;32mOK<1b>[0m
test-seird.R.................. 8 tests <1b>[0;32mOK<1b>[0m
test-seird.R.................. 9 tests <1b>[0;32mOK<1b>[0m
test-seird.R.................. 10 tests <1b>[0;32mOK<1b>[0m
test-seird.R.................. 11 tests <1b>[0;32mOK<1b>[0m
test-seird.R.................. 12 tests <1b>[0;32mOK<1b>[0m
test-seird.R.................. 13 tests <1b>[0;32mOK<1b>[0m
test-seird.R.................. 14 tests <1b>[0;32mOK<1b>[0m
test-seird.R.................. 15 tests <1b>[0;32mOK<1b>[0m
test-seird.R.................. 16 tests <1b>[0;32mOK<1b>[0m <1b>[0;36m13ms<1b>[0m
test-seirdconn.R.............. 0 tests
test-seirdconn.R.............. 0 tests
test-seirdconn.R.............. 0 tests
test-seirdconn.R.............. 0 tests
test-seirdconn.R.............. 0 tests
test-seirdconn.R.............. 0 tests
test-seirdconn.R.............. 0 tests
test-seirdconn.R.............. 0 tests
test-seirdconn.R.............. 1 tests <1b>[0;32mOK<1b>[0m
test-seirdconn.R.............. 2 tests <1b>[0;32mOK<1b>[0m
test-seirdconn.R.............. 3 tests <1b>[0;32mOK<1b>[0m
test-seirdconn.R.............. 4 tests <1b>[0;32mOK<1b>[0m
test-seirdconn.R.............. 4 tests <1b>[0;32mOK<1b>[0m
test-seirdconn.R.............. 4 tests <1b>[0;32mOK<1b>[0m
test-seirdconn.R.............. 4 tests <1b>[0;32mOK<1b>[0m
test-seirdconn.R.............. 4 tests <1b>[0;32mOK<1b>[0m
test-seirdconn.R.............. 4 tests <1b>[0;32mOK<1b>[0m
test-seirdconn.R.............. 4 tests <1b>[0;32mOK<1b>[0m
test-seirdconn.R.............. 5 tests <1b>[0;32mOK<1b>[0m
test-seirdconn.R.............. 6 tests <1b>[0;32mOK<1b>[0m
test-seirdconn.R.............. 7 tests <1b>[0;32mOK<1b>[0m
test-seirdconn.R.............. 8 tests <1b>[0;32mOK<1b>[0m
test-seirdconn.R.............. 9 tests <1b>[0;32mOK<1b>[0m
test-seirdconn.R.............. 10 tests <1b>[0;32mOK<1b>[0m
test-seirdconn.R.............. 11 tests <1b>[0;32mOK<1b>[0m
test-seirdconn.R.............. 12 tests <1b>[0;32mOK<1b>[0m
test-seirdconn.R.............. 13 tests <1b>[0;32mOK<1b>[0m
test-seirdconn.R.............. 14 tests <1b>[0;32mOK<1b>[0m
test-seirdconn.R.............. 15 tests <1b>[0;32mOK<1b>[0m
test-seirdconn.R.............. 16 tests <1b>[0;32mOK<1b>[0m
test-seirdconn.R.............. 17 tests <1b>[0;32mOK<1b>[0m
test-seirdconn.R.............. 18 tests <1b>[0;32mOK<1b>[0m
test-seirdconn.R.............. 19 tests <1b>[0;32mOK<1b>[0m
test-seirdconn.R.............. 20 tests <1b>[0;32mOK<1b>[0m <1b>[0;36m27ms<1b>[0m
test-seirmixing.R............. 0 tests
test-seirmixing.R............. 0 tests
test-seirmixing.R............. 0 tests
test-seirmixing.R............. 0 tests
test-seirmixing.R............. 0 tests
test-seirmixing.R............. 0 tests
test-seirmixing.R............. 0 tests
test-seirmixing.R............. 0 tests _________________________________________________________________________
Running the model...
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| done.
test-seirmixing.R............. 0 tests ________________________________________________________________________________
________________________________________________________________________________
SIMULATION STUDY
Name of the model : Susceptible-Exposed-Infected-Removed (SEIR) with Mixing
Population size : 9000
Agents' data : (none)
Number of entities : 3
Days (duration) : 100 (of 100)
Number of viruses : 1
Last run elapsed t : 95.00ms
Last run speed : 9.45 million agents x day / second
Rewiring : off
Global events:
- Update infected individuals (runs daily)
Virus(es):
- Flu
Tool(s):
(none)
Model parameters:
- Avg. Incubation days : 0.0090
- Contact rate : 40.0000
- Prob. Recovery : 0.1000
- Prob. Transmission : 1.0000
Distribution of the population at time 100:
- (0) Susceptible : 8999 -> 6000
- (1) Exposed : 1 -> 0
- (2) Infected : 0 -> 0
- (3) Recovered : 0 -> 3000
Transition Probabilities:
- Susceptible 1.00 0.00 - -
- Exposed - - 1.00 -
- Infected - - 0.90 0.10
- Recovered - - - 1.00
test-seirmixing.R............. 0 tests
test-seirmixing.R............. 0 tests
test-seirmixing.R............. 0 tests
test-seirmixing.R............. 0 tests
test-seirmixing.R............. 0 tests
test-seirmixing.R............. 0 tests
test-seirmixing.R............. 0 tests
test-seirmixing.R............. 0 tests
test-seirmixing.R............. 0 tests
test-seirmixing.R............. 0 tests
test-seirmixing.R............. 0 tests
test-seirmixing.R............. 0 tests
test-seirmixing.R............. 0 tests
test-seirmixing.R............. 0 tests
test-seirmixing.R............. 0 tests
test-seirmixing.R............. 0 tests
test-seirmixing.R............. 0 tests
test-seirmixing.R............. 0 tests
test-seirmixing.R............. 0 tests
test-seirmixing.R............. 0 tests
test-seirmixing.R............. 0 tests
test-seirmixing.R............. 0 tests
test-seirmixing.R............. 0 tests
test-seirmixing.R............. 0 tests
test-seirmixing.R............. 1 tests <1b>[0;32mOK<1b>[0m
test-seirmixing.R............. 2 tests <1b>[0;32mOK<1b>[0m
test-seirmixing.R............. 3 tests <1b>[0;32mOK<1b>[0m
test-seirmixing.R............. 4 tests <1b>[0;32mOK<1b>[0m
test-seirmixing.R............. 5 tests <1b>[0;32mOK<1b>[0m
test-seirmixing.R............. 6 tests <1b>[0;32mOK<1b>[0m
test-seirmixing.R............. 7 tests <1b>[0;32mOK<1b>[0m
test-seirmixing.R............. 8 tests <1b>[0;32mOK<1b>[0m
test-seirmixing.R............. 9 tests <1b>[0;32mOK<1b>[0m
test-seirmixing.R............. 10 tests <1b>[0;32mOK<1b>[0m
test-seirmixing.R............. 11 tests <1b>[0;32mOK<1b>[0m
test-seirmixing.R............. 12 tests <1b>[0;32mOK<1b>[0m
test-seirmixing.R............. 13 tests <1b>[0;32mOK<1b>[0m
test-seirmixing.R............. 14 tests <1b>[0;32mOK<1b>[0m
test-seirmixing.R............. 15 tests <1b>[0;32mOK<1b>[0m
test-seirmixing.R............. 16 tests <1b>[0;32mOK<1b>[0m <1b>[0;34m0.2s<1b>[0m
test-seirmixingquarantine.R... 0 tests
test-seirmixingquarantine.R... 0 tests
test-seirmixingquarantine.R... 0 tests
test-seirmixingquarantine.R... 0 tests
test-seirmixingquarantine.R... 0 tests
test-seirmixingquarantine.R... 0 tests
test-seirmixingquarantine.R... 0 tests
test-seirmixingquarantine.R... 0 tests _________________________________________________________________________
Running the model...
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| done.
test-seirmixingquarantine.R... 0 tests ________________________________________________________________________________
________________________________________________________________________________
SIMULATION STUDY
Name of the model : SEIR with Mixing and Quarantine
Population size : 9000
Agents' data : (none)
Number of entities : 3
Days (duration) : 100 (of 100)
Number of viruses : 1
Last run elapsed t : 159.00ms
Last run speed : 5.64 million agents x day / second
Rewiring : off
Global events:
- Update infected individuals (runs daily)
Virus(es):
- Flu
Tool(s):
(none)
Model parameters:
- Avg. Incubation days : 0.0090
- Contact rate : 40.0000
- Contact tracing days prior : 3.0000
- Contact tracing success rate : 0.7000
- Days undetected : 3.0000
- Hospitalization period : 7.0000
- Hospitalization rate : 0.0500
- Isolation period : 7.0000
- Isolation willingness : 0.5000
- Prob. Recovery : 0.1000
- Prob. Transmission : 1.0000
- Quarantine period : 14.0000
- Quarantine willingness : 0.8000
Distribution of the population at time 100:
- ( 0) Susceptible : 8999 -> 6000
- ( 1) Exposed : 1 -> 0
- ( 2) Infected : 0 -> 0
- ( 3) Isolated : 0 -> 0
- ( 4) Detected Hospitalized : 0 -> 0
- ( 5) Quarantined Susceptible : 0 -> 0
- ( 6) Quarantined Exposed : 0 -> 0
- ( 7) Isolated Recovered : 0 -> 0
- ( 8) Hospitalized : 0 -> 0
- ( 9) Recovered : 0 -> 3000
Transition Probabilities:
- Susceptible 1.00 0.00 - - - - 0.00 - - -
- Exposed - - 0.92 0.08 - - - - - -
- Infected - - 0.73 0.11 0.02 - - 0.01 0.03 0.09
- Isolated - - 0.15 0.71 0.04 - - 0.08 0.01 0.02
- Detected Hospitalized - - - - 0.86 - - - - 0.14
- Quarantined Susceptible - - - - - - - - - -
- Quarantined Exposed - - - 1.00 - - - - - -
- Isolated Recovered - - - - - - - 0.72 - 0.28
- Hospitalized - - - - - - - - 0.85 0.15
- Recovered - - - - - - - - - 1.00
test-seirmixingquarantine.R... 0 tests
test-seirmixingquarantine.R... 0 tests
test-seirmixingquarantine.R... 0 tests
test-seirmixingquarantine.R... 0 tests
test-seirmixingquarantine.R... 0 tests
test-seirmixingquarantine.R... 0 tests
test-seirmixingquarantine.R... 0 tests
test-seirmixingquarantine.R... 0 tests
test-seirmixingquarantine.R... 0 tests
test-seirmixingquarantine.R... 0 tests
test-seirmixingquarantine.R... 0 tests
test-seirmixingquarantine.R... 0 tests
test-seirmixingquarantine.R... 0 tests
test-seirmixingquarantine.R... 0 tests
test-seirmixingquarantine.R... 0 tests
test-seirmixingquarantine.R... 0 tests
test-seirmixingquarantine.R... 0 tests
test-seirmixingquarantine.R... 0 tests
test-seirmixingquarantine.R... 1 tests <1b>[0;32mOK<1b>[0m
test-seirmixingquarantine.R... 2 tests <1b>[0;32mOK<1b>[0m
test-seirmixingquarantine.R... 3 tests <1b>[0;32mOK<1b>[0m
test-seirmixingquarantine.R... 4 tests <1b>[0;32mOK<1b>[0m
test-seirmixingquarantine.R... 5 tests <1b>[0;32mOK<1b>[0m
test-seirmixingquarantine.R... 6 tests <1b>[0;32mOK<1b>[0m
test-seirmixingquarantine.R... 7 tests <1b>[0;32mOK<1b>[0m
test-seirmixingquarantine.R... 8 tests <1b>[0;32mOK<1b>[0m
test-seirmixingquarantine.R... 9 tests <1b>[0;32mOK<1b>[0m
test-seirmixingquarantine.R... 10 tests <1b>[0;32mOK<1b>[0m
test-seirmixingquarantine.R... 11 tests <1b>[0;32mOK<1b>[0m
test-seirmixingquarantine.R... 12 tests <1b>[0;32mOK<1b>[0m
test-seirmixingquarantine.R... 13 tests <1b>[0;32mOK<1b>[0m
test-seirmixingquarantine.R... 14 tests <1b>[0;32mOK<1b>[0m
test-seirmixingquarantine.R... 15 tests <1b>[0;32mOK<1b>[0m
test-seirmixingquarantine.R... 16 tests <1b>[0;32mOK<1b>[0m
test-seirmixingquarantine.R... 17 tests <1b>[0;32mOK<1b>[0m
test-seirmixingquarantine.R... 18 tests <1b>[0;32mOK<1b>[0m
test-seirmixingquarantine.R... 19 tests <1b>[0;32mOK<1b>[0m <1b>[0;34m0.3s<1b>[0m
test-sir.R.................... 1 tests <1b>[0;32mOK<1b>[0m
test-sir.R.................... 2 tests <1b>[0;32mOK<1b>[0m
test-sir.R.................... 3 tests <1b>[0;32mOK<1b>[0m
test-sir.R.................... 4 tests <1b>[0;32mOK<1b>[0m
test-sir.R.................... 5 tests <1b>[0;32mOK<1b>[0m
test-sir.R.................... 6 tests <1b>[0;32mOK<1b>[0m
test-sir.R.................... 7 tests <1b>[0;32mOK<1b>[0m
test-sir.R.................... 8 tests <1b>[0;32mOK<1b>[0m
test-sir.R.................... 9 tests <1b>[0;32mOK<1b>[0m
test-sir.R.................... 9 tests <1b>[0;32mOK<1b>[0m
test-sir.R.................... 9 tests <1b>[0;32mOK<1b>[0m
test-sir.R.................... 10 tests <1b>[0;32mOK<1b>[0m
test-sir.R.................... 10 tests <1b>[0;32mOK<1b>[0m
test-sir.R.................... 10 tests <1b>[0;32mOK<1b>[0m
test-sir.R.................... 11 tests <1b>[0;32mOK<1b>[0m
test-sir.R.................... 11 tests <1b>[0;32mOK<1b>[0m
test-sir.R.................... 11 tests <1b>[0;32mOK<1b>[0m
test-sir.R.................... 11 tests <1b>[0;32mOK<1b>[0m
test-sir.R.................... 12 tests <1b>[0;32mOK<1b>[0m
test-sir.R.................... 12 tests <1b>[0;32mOK<1b>[0m
test-sir.R.................... 12 tests <1b>[0;32mOK<1b>[0m
test-sir.R.................... 12 tests <1b>[0;32mOK<1b>[0m
test-sir.R.................... 12 tests <1b>[0;32mOK<1b>[0m
test-sir.R.................... 12 tests <1b>[0;32mOK<1b>[0m
test-sir.R.................... 12 tests <1b>[0;32mOK<1b>[0m
test-sir.R.................... 12 tests <1b>[0;32mOK<1b>[0m
test-sir.R.................... 12 tests <1b>[0;32mOK<1b>[0m
test-sir.R.................... 12 tests <1b>[0;32mOK<1b>[0m
test-sir.R.................... 13 tests <1b>[0;32mOK<1b>[0m
test-sir.R.................... 14 tests <1b>[0;32mOK<1b>[0m
test-sir.R.................... 15 tests <1b>[0;32mOK<1b>[0m
test-sir.R.................... 16 tests <1b>[0;32mOK<1b>[0m
test-sir.R.................... 17 tests <1b>[0;32mOK<1b>[0m
test-sir.R.................... 18 tests <1b>[0;32mOK<1b>[0m
test-sir.R.................... 19 tests <1b>[0;32mOK<1b>[0m
test-sir.R.................... 20 tests <1b>[0;32mOK<1b>[0m <1b>[0;34m1.4s<1b>[0m
test-sirconn.R................ 1 tests <1b>[0;32mOK<1b>[0m
test-sirconn.R................ 2 tests <1b>[0;32mOK<1b>[0m
test-sirconn.R................ 3 tests <1b>[0;32mOK<1b>[0m
test-sirconn.R................ 4 tests <1b>[0;32mOK<1b>[0m
test-sirconn.R................ 5 tests <1b>[0;32mOK<1b>[0m
test-sirconn.R................ 6 tests <1b>[0;32mOK<1b>[0m
test-sirconn.R................ 7 tests <1b>[0;32mOK<1b>[0m
test-sirconn.R................ 8 tests <1b>[0;32mOK<1b>[0m
test-sirconn.R................ 9 tests <1b>[0;32mOK<1b>[0m
test-sirconn.R................ 9 tests <1b>[0;32mOK<1b>[0m
test-sirconn.R................ 9 tests <1b>[0;32mOK<1b>[0m
test-sirconn.R................ 9 tests <1b>[0;32mOK<1b>[0m
test-sirconn.R................ 10 tests <1b>[0;32mOK<1b>[0m
test-sirconn.R................ 10 tests <1b>[0;32mOK<1b>[0m
test-sirconn.R................ 10 tests <1b>[0;32mOK<1b>[0m
test-sirconn.R................ 10 tests <1b>[0;32mOK<1b>[0m
test-sirconn.R................ 11 tests <1b>[0;32mOK<1b>[0m
test-sirconn.R................ 12 tests <1b>[0;32mOK<1b>[0m
test-sirconn.R................ 12 tests <1b>[0;32mOK<1b>[0m
test-sirconn.R................ 12 tests <1b>[0;32mOK<1b>[0m
test-sirconn.R................ 12 tests <1b>[0;32mOK<1b>[0m
test-sirconn.R................ 12 tests <1b>[0;32mOK<1b>[0m
test-sirconn.R................ 12 tests <1b>[0;32mOK<1b>[0m
test-sirconn.R................ 12 tests <1b>[0;32mOK<1b>[0m
test-sirconn.R................ 12 tests <1b>[0;32mOK<1b>[0m
test-sirconn.R................ 12 tests <1b>[0;32mOK<1b>[0m
test-sirconn.R................ 12 tests <1b>[0;32mOK<1b>[0m
test-sirconn.R................ 12 tests <1b>[0;32mOK<1b>[0m
test-sirconn.R................ 12 tests <1b>[0;32mOK<1b>[0m
test-sirconn.R................ 12 tests <1b>[0;32mOK<1b>[0m
test-sirconn.R................ 13 tests <1b>[0;32mOK<1b>[0m
test-sirconn.R................ 14 tests <1b>[0;32mOK<1b>[0m
test-sirconn.R................ 15 tests <1b>[0;32mOK<1b>[0m
test-sirconn.R................ 16 tests <1b>[0;32mOK<1b>[0m
test-sirconn.R................ 17 tests <1b>[0;32mOK<1b>[0m
test-sirconn.R................ 18 tests <1b>[0;32mOK<1b>[0m <1b>[0;34m0.1s<1b>[0m
test-sird.R................... 1 tests <1b>[0;32mOK<1b>[0m
test-sird.R................... 2 tests <1b>[0;32mOK<1b>[0m
test-sird.R................... 3 tests <1b>[0;32mOK<1b>[0m
test-sird.R................... 4 tests <1b>[0;32mOK<1b>[0m
test-sird.R................... 5 tests <1b>[0;32mOK<1b>[0m
test-sird.R................... 6 tests <1b>[0;32mOK<1b>[0m
test-sird.R................... 7 tests <1b>[0;32mOK<1b>[0m
test-sird.R................... 8 tests <1b>[0;32mOK<1b>[0m
test-sird.R................... 9 tests <1b>[0;32mOK<1b>[0m
test-sird.R................... 10 tests <1b>[0;32mOK<1b>[0m
test-sird.R................... 10 tests <1b>[0;32mOK<1b>[0m
test-sird.R................... 11 tests <1b>[0;32mOK<1b>[0m
test-sird.R................... 12 tests <1b>[0;32mOK<1b>[0m
test-sird.R................... 13 tests <1b>[0;32mOK<1b>[0m
test-sird.R................... 14 tests <1b>[0;32mOK<1b>[0m
test-sird.R................... 14 tests <1b>[0;32mOK<1b>[0m
test-sird.R................... 14 tests <1b>[0;32mOK<1b>[0m
test-sird.R................... 14 tests <1b>[0;32mOK<1b>[0m
test-sird.R................... 14 tests <1b>[0;32mOK<1b>[0m
test-sird.R................... 14 tests <1b>[0;32mOK<1b>[0m
test-sird.R................... 14 tests <1b>[0;32mOK<1b>[0m
test-sird.R................... 14 tests <1b>[0;32mOK<1b>[0m
test-sird.R................... 14 tests <1b>[0;32mOK<1b>[0m
test-sird.R................... 14 tests <1b>[0;32mOK<1b>[0m
test-sird.R................... 15 tests <1b>[0;32mOK<1b>[0m
test-sird.R................... 16 tests <1b>[0;32mOK<1b>[0m
test-sird.R................... 17 tests <1b>[0;32mOK<1b>[0m
test-sird.R................... 18 tests <1b>[0;32mOK<1b>[0m
test-sird.R................... 19 tests <1b>[0;32mOK<1b>[0m <1b>[0;36m95ms<1b>[0m
test-sirdconn.R............... 0 tests
test-sirdconn.R............... 0 tests
test-sirdconn.R............... 0 tests
test-sirdconn.R............... 0 tests
test-sirdconn.R............... 0 tests
test-sirdconn.R............... 0 tests
test-sirdconn.R............... 0 tests
test-sirdconn.R............... 1 tests <1b>[0;32mOK<1b>[0m
test-sirdconn.R............... 2 tests <1b>[0;32mOK<1b>[0m
test-sirdconn.R............... 3 tests <1b>[0;32mOK<1b>[0m
test-sirdconn.R............... 4 tests <1b>[0;32mOK<1b>[0m
test-sirdconn.R............... 4 tests <1b>[0;32mOK<1b>[0m
test-sirdconn.R............... 4 tests <1b>[0;32mOK<1b>[0m
test-sirdconn.R............... 4 tests <1b>[0;32mOK<1b>[0m
test-sirdconn.R............... 4 tests <1b>[0;32mOK<1b>[0m
test-sirdconn.R............... 4 tests <1b>[0;32mOK<1b>[0m
test-sirdconn.R............... 5 tests <1b>[0;32mOK<1b>[0m
test-sirdconn.R............... 6 tests <1b>[0;32mOK<1b>[0m
test-sirdconn.R............... 7 tests <1b>[0;32mOK<1b>[0m
test-sirdconn.R............... 8 tests <1b>[0;32mOK<1b>[0m
test-sirdconn.R............... 9 tests <1b>[0;32mOK<1b>[0m
test-sirdconn.R............... 10 tests <1b>[0;32mOK<1b>[0m
test-sirdconn.R............... 11 tests <1b>[0;32mOK<1b>[0m <1b>[0;36m15ms<1b>[0m
test-sirlogit.R............... 0 tests
test-sirlogit.R............... 0 tests
test-sirlogit.R............... 0 tests
test-sirlogit.R............... 0 tests
test-sirlogit.R............... 0 tests
test-sirlogit.R............... 0 tests
test-sirlogit.R............... 0 tests
test-sirlogit.R............... 0 tests
test-sirlogit.R............... 0 tests
test-sirlogit.R............... 0 tests
test-sirlogit.R............... 1 tests <1b>[0;32mOK<1b>[0m
test-sirlogit.R............... 2 tests <1b>[0;32mOK<1b>[0m
test-sirlogit.R............... 3 tests <1b>[0;32mOK<1b>[0m
test-sirlogit.R............... 3 tests <1b>[0;32mOK<1b>[0m
test-sirlogit.R............... 3 tests <1b>[0;32mOK<1b>[0m
test-sirlogit.R............... 3 tests <1b>[0;32mOK<1b>[0m
test-sirlogit.R............... 3 tests <1b>[0;32mOK<1b>[0m
test-sirlogit.R............... 3 tests <1b>[0;32mOK<1b>[0m
test-sirlogit.R............... 3 tests <1b>[0;32mOK<1b>[0m
test-sirlogit.R............... 3 tests <1b>[0;32mOK<1b>[0m
test-sirlogit.R............... 3 tests <1b>[0;32mOK<1b>[0m
test-sirlogit.R............... 3 tests <1b>[0;32mOK<1b>[0m
test-sirlogit.R............... 3 tests <1b>[0;32mOK<1b>[0m
test-sirlogit.R............... 3 tests <1b>[0;32mOK<1b>[0m
test-sirlogit.R............... 4 tests <1b>[0;32mOK<1b>[0m
test-sirlogit.R............... 5 tests <1b>[0;32mOK<1b>[0m
test-sirlogit.R............... 6 tests <1b>[0;32mOK<1b>[0m
test-sirlogit.R............... 7 tests <1b>[0;32mOK<1b>[0m
test-sirlogit.R............... 8 tests <1b>[0;32mOK<1b>[0m
test-sirlogit.R............... 9 tests <1b>[0;32mOK<1b>[0m
test-sirlogit.R............... 10 tests <1b>[0;32mOK<1b>[0m
test-sirlogit.R............... 11 tests <1b>[0;32mOK<1b>[0m
test-sirlogit.R............... 12 tests <1b>[0;32mOK<1b>[0m <1b>[0;36m37ms<1b>[0m
test-sirmixing.R.............. 0 tests
test-sirmixing.R.............. 0 tests
test-sirmixing.R.............. 0 tests
test-sirmixing.R.............. 0 tests
test-sirmixing.R.............. 0 tests
test-sirmixing.R.............. 0 tests
test-sirmixing.R.............. 0 tests
test-sirmixing.R.............. 1 tests <1b>[0;32mOK<1b>[0m
test-sirmixing.R.............. 2 tests <1b>[0;32mOK<1b>[0m
test-sirmixing.R.............. 3 tests <1b>[0;32mOK<1b>[0m
test-sirmixing.R.............. 4 tests <1b>[0;32mOK<1b>[0m
test-sirmixing.R.............. 4 tests <1b>[0;32mOK<1b>[0m
test-sirmixing.R.............. 4 tests <1b>[0;32mOK<1b>[0m
test-sirmixing.R.............. 4 tests <1b>[0;32mOK<1b>[0m
test-sirmixing.R.............. 4 tests <1b>[0;32mOK<1b>[0m
test-sirmixing.R.............. 4 tests <1b>[0;32mOK<1b>[0m
test-sirmixing.R.............. 4 tests <1b>[0;32mOK<1b>[0m
test-sirmixing.R.............. 4 tests <1b>[0;32mOK<1b>[0m
test-sirmixing.R.............. 5 tests <1b>[0;32mOK<1b>[0m
test-sirmixing.R.............. 6 tests <1b>[0;32mOK<1b>[0m
test-sirmixing.R.............. 7 tests <1b>[0;32mOK<1b>[0m
test-sirmixing.R.............. 8 tests <1b>[0;32mOK<1b>[0m
test-sirmixing.R.............. 9 tests <1b>[0;32mOK<1b>[0m
test-sirmixing.R.............. 10 tests <1b>[0;32mOK<1b>[0m
test-sirmixing.R.............. 11 tests <1b>[0;32mOK<1b>[0m <1b>[0;36m16ms<1b>[0m
test-sis.R.................... 1 tests <1b>[0;32mOK<1b>[0m
test-sis.R.................... 2 tests <1b>[0;32mOK<1b>[0m
test-sis.R.................... 3 tests <1b>[0;32mOK<1b>[0m
test-sis.R.................... 4 tests <1b>[0;32mOK<1b>[0m
test-sis.R.................... 5 tests <1b>[0;32mOK<1b>[0m
test-sis.R.................... 6 tests <1b>[0;32mOK<1b>[0m
test-sis.R.................... 7 tests <1b>[0;32mOK<1b>[0m
test-sis.R.................... 8 tests <1b>[0;32mOK<1b>[0m
test-sis.R.................... 9 tests <1b>[0;32mOK<1b>[0m
test-sis.R.................... 9 tests <1b>[0;32mOK<1b>[0m
test-sis.R.................... 9 tests <1b>[0;32mOK<1b>[0m
test-sis.R.................... 9 tests <1b>[0;32mOK<1b>[0m
test-sis.R.................... 9 tests <1b>[0;32mOK<1b>[0m
test-sis.R.................... 9 tests <1b>[0;32mOK<1b>[0m
test-sis.R.................... 9 tests <1b>[0;32mOK<1b>[0m
test-sis.R.................... 9 tests <1b>[0;32mOK<1b>[0m
test-sis.R.................... 9 tests <1b>[0;32mOK<1b>[0m
test-sis.R.................... 10 tests <1b>[0;32mOK<1b>[0m
test-sis.R.................... 11 tests <1b>[0;32mOK<1b>[0m
test-sis.R.................... 12 tests <1b>[0;32mOK<1b>[0m
test-sis.R.................... 13 tests <1b>[0;32mOK<1b>[0m <1b>[0;34m0.9s<1b>[0m
test-sisd.R................... 0 tests
test-sisd.R................... 0 tests
test-sisd.R................... 0 tests
test-sisd.R................... 0 tests
test-sisd.R................... 0 tests
test-sisd.R................... 1 tests <1b>[0;32mOK<1b>[0m
test-sisd.R................... 2 tests <1b>[0;32mOK<1b>[0m
test-sisd.R................... 3 tests <1b>[0;32mOK<1b>[0m
test-sisd.R................... 4 tests <1b>[0;32mOK<1b>[0m
test-sisd.R................... 4 tests <1b>[0;32mOK<1b>[0m
test-sisd.R................... 4 tests <1b>[0;32mOK<1b>[0m
test-sisd.R................... 4 tests <1b>[0;32mOK<1b>[0m
test-sisd.R................... 4 tests <1b>[0;32mOK<1b>[0m
test-sisd.R................... 5 tests <1b>[0;32mOK<1b>[0m
test-sisd.R................... 6 tests <1b>[0;32mOK<1b>[0m
test-sisd.R................... 7 tests <1b>[0;32mOK<1b>[0m
test-sisd.R................... 8 tests <1b>[0;32mOK<1b>[0m
test-sisd.R................... 9 tests <1b>[0;32mOK<1b>[0m <1b>[0;36m11ms<1b>[0m
test-surv.R................... 0 tests
test-surv.R................... 0 tests
test-surv.R................... 0 tests
test-surv.R................... 0 tests
test-surv.R................... 0 tests
test-surv.R................... 0 tests
test-surv.R................... 0 tests
test-surv.R................... 0 tests
test-surv.R................... 0 tests
test-surv.R................... 0 tests
test-surv.R................... 0 tests
test-surv.R................... 0 tests
test-surv.R................... 0 tests
test-surv.R................... 1 tests <1b>[0;32mOK<1b>[0m
test-surv.R................... 2 tests <1b>[0;32mOK<1b>[0m
test-surv.R................... 3 tests <1b>[0;32mOK<1b>[0m
test-surv.R................... 4 tests <1b>[0;32mOK<1b>[0m
test-surv.R................... 4 tests <1b>[0;32mOK<1b>[0m
test-surv.R................... 4 tests <1b>[0;32mOK<1b>[0m
test-surv.R................... 4 tests <1b>[0;32mOK<1b>[0m
test-surv.R................... 4 tests <1b>[0;32mOK<1b>[0m
test-surv.R................... 5 tests <1b>[0;32mOK<1b>[0m
test-surv.R................... 6 tests <1b>[0;32mOK<1b>[0m
test-surv.R................... 7 tests <1b>[0;32mOK<1b>[0m
test-surv.R................... 8 tests <1b>[0;32mOK<1b>[0m
test-surv.R................... 9 tests <1b>[0;32mOK<1b>[0m
test-surv.R................... 10 tests <1b>[0;32mOK<1b>[0m
test-surv.R................... 11 tests <1b>[0;32mOK<1b>[0m
test-surv.R................... 12 tests <1b>[0;32mOK<1b>[0m
test-surv.R................... 13 tests <1b>[0;32mOK<1b>[0m
test-surv.R................... 14 tests <1b>[0;32mOK<1b>[0m
test-surv.R................... 15 tests <1b>[0;32mOK<1b>[0m
test-surv.R................... 16 tests <1b>[0;32mOK<1b>[0m
test-surv.R................... 17 tests <1b>[0;32mOK<1b>[0m <1b>[0;36m25ms<1b>[0m
test-tool.R................... 0 tests
test-tool.R................... 1 tests <1b>[0;32mOK<1b>[0m
test-tool.R................... 2 tests <1b>[0;32mOK<1b>[0m
test-tool.R................... 3 tests <1b>[0;32mOK<1b>[0m
test-tool.R................... 4 tests <1b>[0;32mOK<1b>[0m
test-tool.R................... 5 tests <1b>[0;32mOK<1b>[0m
test-tool.R................... 5 tests <1b>[0;32mOK<1b>[0m
test-tool.R................... 6 tests <1b>[0;32mOK<1b>[0m
test-tool.R................... 7 tests <1b>[0;32mOK<1b>[0m
test-tool.R................... 8 tests <1b>[0;32mOK<1b>[0m
test-tool.R................... 8 tests <1b>[0;32mOK<1b>[0m
test-tool.R................... 9 tests <1b>[0;32mOK<1b>[0m
test-tool.R................... 10 tests <1b>[0;32mOK<1b>[0m
test-tool.R................... 11 tests <1b>[0;32mOK<1b>[0m
test-tool.R................... 12 tests <1b>[0;32mOK<1b>[0m
test-tool.R................... 13 tests <1b>[0;32mOK<1b>[0m
test-tool.R................... 14 tests <1b>[0;32mOK<1b>[0m
test-tool.R................... 15 tests <1b>[0;32mOK<1b>[0m
test-tool.R................... 16 tests <1b>[0;32mOK<1b>[0m
test-tool.R................... 17 tests <1b>[0;32mOK<1b>[0m
test-tool.R................... 18 tests <1b>[0;32mOK<1b>[0m <1b>[0;36m22ms<1b>[0m
test-virus.R.................. 1 tests <1b>[0;32mOK<1b>[0m
test-virus.R.................. 2 tests <1b>[0;32mOK<1b>[0m
test-virus.R.................. 3 tests <1b>[0;32mOK<1b>[0m
test-virus.R.................. 4 tests <1b>[0;32mOK<1b>[0m <1b>[0;36m3ms<1b>[0m
----- FAILED[xcpt]: test-model-methods.R<19--22>
call| expect_message(md_with_output <- draw_mermaid(model, output_file = "mermaid_diagram.txt"),
call| --> "Diagram written")
diff| No message was emitted
diff| Found 0 message(s), 0 warning(s), and 1 error(s):
diff|
diff| ERR: Could not open the file mermaid_diagram.txt for writing.
----- FAILED[data]: test-model-methods.R<25--25>
call| expect_true(file.exists("mermaid_diagram.txt"))
diff| Expected TRUE, got FALSE
Error: 2 out of 511 tests failed
In addition: Warning message:
In file.remove("mermaid_diagram.txt") :
cannot remove file 'mermaid_diagram.txt', reason 'Read-only file system'
Execution halted
Flavor: r-patched-linux-x86_64
Version: 0.10.0.0
Check: tests
Result: ERROR
Running ‘tinytest.R’ [33s/46s]
Running the tests in ‘tests/tinytest.R’ failed.
Complete output:
>
> if (requireNamespace("tinytest", quietly = TRUE)) {
+
+ test_tmat_matches_expected <- function(tmat) {
+ # Check for out of bounds values
+ tinytest::expect_false(any(tmat < 0))
+ tinytest::expect_false(any(tmat > 1))
+ }
+
+ tinytest::test_package("epiworldR")
+ }
Thank you for using epiworldR! Please consider citing it in your work.
You can find the citation information by running
citation("epiworldR")
test-agents-and-dist-virus-tool.R 0 tests
test-agents-and-dist-virus-tool.R 0 tests _________________________________________________________________________
Running the model...
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| done.
test-agents-and-dist-virus-tool.R 0 tests
test-agents-and-dist-virus-tool.R 0 tests
test-agents-and-dist-virus-tool.R 1 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 1 tests <1b>[0;32mOK<1b>[0m Starting multiple runs (100) using 2 thread(s)
_________________________________________________________________________
_________________________________________________________________________
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| done.
test-agents-and-dist-virus-tool.R 1 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 1 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 1 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 1 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 2 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 2 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 2 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 2 tests <1b>[0;32mOK<1b>[0m _________________________________________________________________________
Running the model...
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| done.
test-agents-and-dist-virus-tool.R 2 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 2 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 3 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 4 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 4 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 4 tests <1b>[0;32mOK<1b>[0m Starting multiple runs (100) using 2 thread(s)
_________________________________________________________________________
_________________________________________________________________________
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| done.
test-agents-and-dist-virus-tool.R 4 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 4 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 4 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 5 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 5 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 5 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 5 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 5 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 5 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 5 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 5 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 5 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 5 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 5 tests <1b>[0;32mOK<1b>[0m _________________________________________________________________________
Running the model...
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| done.
test-agents-and-dist-virus-tool.R 5 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 5 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 6 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 6 tests <1b>[0;32mOK<1b>[0m Starting multiple runs (100) using 2 thread(s)
_________________________________________________________________________
_________________________________________________________________________
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| done.
test-agents-and-dist-virus-tool.R 6 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 6 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 6 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 6 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 7 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 7 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 7 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 7 tests <1b>[0;32mOK<1b>[0m _________________________________________________________________________
Running the model...
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| done.
test-agents-and-dist-virus-tool.R 7 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 7 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 8 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 9 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 9 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 9 tests <1b>[0;32mOK<1b>[0m Starting multiple runs (100) using 2 thread(s)
_________________________________________________________________________
_________________________________________________________________________
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| done.
test-agents-and-dist-virus-tool.R 9 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 9 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 9 tests <1b>[0;32mOK<1b>[0m
test-agents-and-dist-virus-tool.R 10 tests <1b>[0;32mOK<1b>[0m <1b>[0;34m4.9s<1b>[0m
test-diffnet.R................ 0 tests
test-diffnet.R................ 0 tests
test-diffnet.R................ 0 tests
test-diffnet.R................ 0 tests
test-diffnet.R................ 0 tests
test-diffnet.R................ 0 tests
test-diffnet.R................ 0 tests
test-diffnet.R................ 1 tests <1b>[0;32mOK<1b>[0m
test-diffnet.R................ 2 tests <1b>[0;32mOK<1b>[0m
test-diffnet.R................ 3 tests <1b>[0;32mOK<1b>[0m
test-diffnet.R................ 4 tests <1b>[0;32mOK<1b>[0m
test-diffnet.R................ 4 tests <1b>[0;32mOK<1b>[0m
test-diffnet.R................ 4 tests <1b>[0;32mOK<1b>[0m
test-diffnet.R................ 4 tests <1b>[0;32mOK<1b>[0m
test-diffnet.R................ 4 tests <1b>[0;32mOK<1b>[0m
test-diffnet.R................ 4 tests <1b>[0;32mOK<1b>[0m
test-diffnet.R................ 4 tests <1b>[0;32mOK<1b>[0m
test-diffnet.R................ 4 tests <1b>[0;32mOK<1b>[0m
test-diffnet.R................ 4 tests <1b>[0;32mOK<1b>[0m
test-diffnet.R................ 4 tests <1b>[0;32mOK<1b>[0m
test-diffnet.R................ 4 tests <1b>[0;32mOK<1b>[0m
test-diffnet.R................ 4 tests <1b>[0;32mOK<1b>[0m
test-diffnet.R................ 4 tests <1b>[0;32mOK<1b>[0m
test-diffnet.R................ 4 tests <1b>[0;32mOK<1b>[0m
test-diffnet.R................ 4 tests <1b>[0;32mOK<1b>[0m
test-diffnet.R................ 5 tests <1b>[0;32mOK<1b>[0m
test-diffnet.R................ 6 tests <1b>[0;32mOK<1b>[0m
test-diffnet.R................ 7 tests <1b>[0;32mOK<1b>[0m
test-diffnet.R................ 8 tests <1b>[0;32mOK<1b>[0m
test-diffnet.R................ 9 tests <1b>[0;32mOK<1b>[0m
test-diffnet.R................ 10 tests <1b>[0;32mOK<1b>[0m
test-diffnet.R................ 11 tests <1b>[0;32mOK<1b>[0m
test-diffnet.R................ 12 tests <1b>[0;32mOK<1b>[0m <1b>[0;36m17ms<1b>[0m
test-get.R.................... 0 tests
test-get.R.................... 0 tests
test-get.R.................... 1 tests <1b>[0;32mOK<1b>[0m
test-get.R.................... 2 tests <1b>[0;32mOK<1b>[0m
test-get.R.................... 3 tests <1b>[0;32mOK<1b>[0m
test-get.R.................... 4 tests <1b>[0;32mOK<1b>[0m
test-get.R.................... 5 tests <1b>[0;32mOK<1b>[0m
test-get.R.................... 6 tests <1b>[0;32mOK<1b>[0m
test-get.R.................... 6 tests <1b>[0;32mOK<1b>[0m <1b>[0;36m13ms<1b>[0m
test-lfmcmc.R................. 0 tests
test-lfmcmc.R................. 0 tests
test-lfmcmc.R................. 0 tests
test-lfmcmc.R................. 0 tests
test-lfmcmc.R................. 0 tests
test-lfmcmc.R................. 1 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 2 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 3 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 4 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 5 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 5 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 6 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 6 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 6 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 6 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 6 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 7 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 8 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 9 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 10 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 10 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 10 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 10 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 11 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 12 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 13 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 14 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 15 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 16 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 17 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 18 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 19 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 20 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 21 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 22 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 22 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 23 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 24 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 25 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 26 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 26 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 27 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 28 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 29 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 30 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 31 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 32 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 33 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 34 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 35 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 36 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 37 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 38 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 39 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 39 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 40 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 40 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 40 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 40 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 41 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 42 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 43 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 44 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 45 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 46 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 47 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 47 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 47 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 47 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 47 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 47 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 48 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 49 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 50 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 51 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 52 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 52 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 52 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 52 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 52 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 52 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 52 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 52 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 52 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 52 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 52 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 52 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 53 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 53 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 53 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 54 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 55 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 56 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 57 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 58 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 59 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 60 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 61 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 62 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 63 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 64 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 65 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 66 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 67 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 68 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 69 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 70 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 71 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 72 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 73 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 74 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 75 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 76 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 77 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 78 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 79 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 80 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 81 tests <1b>[0;32mOK<1b>[0m
test-lfmcmc.R................. 82 tests <1b>[0;32mOK<1b>[0m <1b>[0;34m25.9s<1b>[0m
test-measles-quarantine-errors.R 0 tests
test-measles-quarantine-errors.R 1 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 2 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 2 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 3 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 4 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 5 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 6 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 7 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 8 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 9 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 9 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 9 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 9 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 9 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 9 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 10 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 11 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 12 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 13 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 14 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 15 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 16 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 17 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 18 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 19 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 20 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 21 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 22 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 23 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 24 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 25 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 26 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 27 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 28 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 29 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 30 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 31 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 32 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 33 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 34 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 35 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 36 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 37 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 38 tests <1b>[0;32mOK<1b>[0m
test-measles-quarantine-errors.R 39 tests <1b>[0;32mOK<1b>[0m <1b>[0;36m69ms<1b>[0m
test-measles-quarantine-math.R 0 tests Starting multiple runs (200) using 2 thread(s)
_________________________________________________________________________
_________________________________________________________________________
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| done.
----- PASSED : test-measles-quarantine-math.R<4--39>
call| expect_equal(r0_obs, R0, tolerance = 0.1)
Starting multiple runs (200) using 2 thread(s)
_________________________________________________________________________
_________________________________________________________________________
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| done.
----- PASSED : test-measles-quarantine-math.R<4--39>
call| expect_equal(r0_obs, R0, tolerance = 0.1)
Starting multiple runs (200) using 2 thread(s)
_________________________________________________________________________
_________________________________________________________________________
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| done.
----- PASSED : test-measles-quarantine-math.R<4--39>
call| expect_equal(r0_obs, R0, tolerance = 0.1)
test-measles-quarantine-math.R 3 tests <1b>[0;32mOK<1b>[0m <1b>[0;34m4.4s<1b>[0m
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests _________________________________________________________________________
Running the model...
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| done.
test-measlesmixing.R.......... 0 tests ________________________________________________________________________________
________________________________________________________________________________
SIMULATION STUDY
Name of the model : Measles with Mixing and Quarantine
Population size : 9000
Agents' data : (none)
Number of entities : 3
Days (duration) : 100 (of 100)
Number of viruses : 1
Last run elapsed t : 113.00ms
Last run speed : 7.94 million agents x day / second
Rewiring : off
Global events:
- Update infected individuals (runs daily)
Virus(es):
- Measles
Tool(s):
- Vaccine
Model parameters:
- (IGNORED) Vax improved recovery : 0.8000
- Contact rate : 15.0000
- Contact tracing days prior : 4.0000
- Contact tracing success rate : 0.8000
- Days undetected : 2.0000
- Hospitalization period : 10.0000
- Hospitalization rate : 0.1000
- Incubation period : 10.0000
- Isolation period : 10.0000
- Isolation willingness : 0.8000
- Prodromal period : 3.0000
- Quarantine period : 14.0000
- Quarantine willingness : 0.9000
- Rash period : 7.0000
- Transmission rate : 0.9000
- Vaccination rate : 0.9500
- Vax efficacy : 0.9700
Distribution of the population at time 100:
- ( 0) Susceptible : 8999 -> 8999
- ( 1) Exposed : 1 -> 0
- ( 2) Prodromal : 0 -> 0
- ( 3) Rash : 0 -> 0
- ( 4) Isolated : 0 -> 0
- ( 5) Isolated Recovered : 0 -> 0
- ( 6) Detected Hospitalized : 0 -> 0
- ( 7) Quarantined Exposed : 0 -> 0
- ( 8) Quarantined Susceptible : 0 -> 0
- ( 9) Quarantined Prodromal : 0 -> 0
- (10) Quarantined Recovered : 0 -> 0
- (11) Hospitalized : 0 -> 0
- (12) Recovered : 0 -> 1
Transition Probabilities:
- Susceptible 1.00 0.00 - - - - - - - - - - -
- Exposed - 0.96 0.04 - - - - - - - - - -
- Prodromal - - - 1.00 - - - - - - - - -
- Rash - - - - - 1.00 - - - - - - -
- Isolated - - - - - - - - - - - - -
- Isolated Recovered - - - - - 0.89 - - - - - - 0.11
- Detected Hospitalized - - - - - - - - - - - - -
- Quarantined Exposed - - - - - - - - - - - - -
- Quarantined Susceptible - - - - - - - - - - - - -
- Quarantined Prodromal - - - - - - - - - - - - -
- Quarantined Recovered - - - - - - - - - - - - -
- Hospitalized - - - - - - - - - - - - -
- Recovered - - - - - - - - - - - - 1.00
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 0 tests
test-measlesmixing.R.......... 1 tests <1b>[0;32mOK<1b>[0m
test-measlesmixing.R.......... 2 tests <1b>[0;32mOK<1b>[0m
test-measlesmixing.R.......... 3 tests <1b>[0;32mOK<1b>[0m
test-measlesmixing.R.......... 4 tests <1b>[0;32mOK<1b>[0m
test-measlesmixing.R.......... 5 tests <1b>[0;32mOK<1b>[0m
test-measlesmixing.R.......... 6 tests <1b>[0;32mOK<1b>[0m
test-measlesmixing.R.......... 7 tests <1b>[0;32mOK<1b>[0m
test-measlesmixing.R.......... 8 tests <1b>[0;32mOK<1b>[0m <1b>[0;34m0.2s<1b>[0m
test-measlesmixingriskquarantine-multiple.R 0 tests
test-measlesmixingriskquarantine-multiple.R 0 tests
test-measlesmixingriskquarantine-multiple.R 0 tests
test-measlesmixingriskquarantine-multiple.R 0 tests
test-measlesmixingriskquarantine-multiple.R 0 tests
test-measlesmixingriskquarantine-multiple.R 0 tests
test-measlesmixingriskquarantine-multiple.R 0 tests
test-measlesmixingriskquarantine-multiple.R 0 tests
test-measlesmixingriskquarantine-multiple.R 0 tests
test-measlesmixingriskquarantine-multiple.R 0 tests Starting multiple runs (50) using 2 thread(s)
_________________________________________________________________________
_________________________________________________________________________
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| done.
test-measlesmixingriskquarantine-multiple.R 0 tests Starting multiple runs (50) using 2 thread(s)
_________________________________________________________________________
_________________________________________________________________________
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| done.
test-measlesmixingriskquarantine-multiple.R 0 tests Starting multiple runs (50) using 2 thread(s)
_________________________________________________________________________
_________________________________________________________________________
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| done.
test-measlesmixingriskquarantine-multiple.R 0 tests Starting multiple runs (50) using 2 thread(s)
_________________________________________________________________________
_________________________________________________________________________
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| done.
test-measlesmixingriskquarantine-multiple.R 0 tests Starting multiple runs (50) using 2 thread(s)
_________________________________________________________________________
_________________________________________________________________________
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| done.
test-measlesmixingriskquarantine-multiple.R 0 tests
test-measlesmixingriskquarantine-multiple.R 1 tests <1b>[0;32mOK<1b>[0m
test-measlesmixingriskquarantine-multiple.R 2 tests <1b>[0;32mOK<1b>[0m
test-measlesmixingriskquarantine-multiple.R 3 tests <1b>[0;32mOK<1b>[0m
test-measlesmixingriskquarantine-multiple.R 4 tests <1b>[0;32mOK<1b>[0m
test-measlesmixingriskquarantine-multiple.R 5 tests <1b>[0;32mOK<1b>[0m
test-measlesmixingriskquarantine-multiple.R 6 tests <1b>[0;32mOK<1b>[0m
test-measlesmixingriskquarantine-multiple.R 7 tests <1b>[0;32mOK<1b>[0m <1b>[0;34m2.1s<1b>[0m
test-measlesmixingriskquarantine.R 0 tests
test-measlesmixingriskquarantine.R 0 tests
test-measlesmixingriskquarantine.R 0 tests
test-measlesmixingriskquarantine.R 0 tests
test-measlesmixingriskquarantine.R 0 tests
test-measlesmixingriskquarantine.R 0 tests
test-measlesmixingriskquarantine.R 0 tests
test-measlesmixingriskquarantine.R 0 tests _________________________________________________________________________
Running the model...
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| done.
test-measlesmixingriskquarantine.R 0 tests ________________________________________________________________________________
________________________________________________________________________________
SIMULATION STUDY
Name of the model : Measles with Mixing and Risk-based Quarantine
Population size : 9000
Agents' data : (none)
Number of entities : 3
Days (duration) : 100 (of 100)
Number of viruses : 1
Last run elapsed t : 47.00ms
Last run speed : 18.97 million agents x day / second
Rewiring : off
Global events:
- Update infected individuals (runs daily)
Virus(es):
- Measles
Tool(s):
- Vaccine
Model parameters:
- Contact rate : 15.0000
- Contact tracing days prior : 4.0000
- Contact tracing success rate : 0.8000
- Days undetected : 2.0000
- Detection rate quarantine : 0.5000
- Hospitalization period : 10.0000
- Hospitalization rate : 0.1000
- Incubation period : 10.0000
- Isolation period : 10.0000
- Isolation willingness : 0.8000
- Prodromal period : 3.0000
- Quarantine period high : 21.0000
- Quarantine period low : 7.0000
- Quarantine period medium : 14.0000
- Quarantine willingness : 0.9000
- Rash period : 7.0000
- Transmission rate : 0.9000
- Vaccination rate : 0.9500
- Vax efficacy : 0.9700
Distribution of the population at time 100:
- ( 0) Susceptible : 8999 -> 8999
- ( 1) Exposed : 1 -> 0
- ( 2) Prodromal : 0 -> 0
- ( 3) Rash : 0 -> 0
- ( 4) Isolated : 0 -> 0
- ( 5) Isolated Recovered : 0 -> 0
- ( 6) Detected Hospitalized : 0 -> 0
- ( 7) Quarantined Exposed : 0 -> 0
- ( 8) Quarantined Susceptible : 0 -> 0
- ( 9) Quarantined Prodromal : 0 -> 0
- (10) Quarantined Recovered : 0 -> 0
- (11) Hospitalized : 0 -> 0
- (12) Recovered : 0 -> 1
Transition Probabilities:
- Susceptible 1.00 0.00 - - - - - - 0.00 - - - -
- Exposed - 0.96 0.04 - - - - - - - - - -
- Prodromal - - - 1.00 - - - - - - - - -
- Rash - - - - - 1.00 - - - - - - -
- Isolated - - - - - - - - - - - - -
- Isolated Recovered - - - - - 0.89 - - - - - - 0.11
- Detected Hospitalized - - - - - - - - - - - - -
- Quarantined Exposed - - - - - - - - - - - - -
- Quarantined Susceptible 0.09 - - - - - - - 0.91 - - - -
- Quarantined Prodromal - - - - - - - - - - - - -
- Quarantined Recovered - - - - - - - - - - - - -
- Hospitalized - - - - - - - - - - - - -
- Recovered - - - - - - - - - - - - 1.00
test-measlesmixingriskquarantine.R 0 tests
test-measlesmixingriskquarantine.R 0 tests
test-measlesmixingriskquarantine.R 0 tests
test-measlesmixingriskquarantine.R 0 tests
test-measlesmixingriskquarantine.R 0 tests
test-measlesmixingriskquarantine.R 0 tests
test-measlesmixingriskquarantine.R 0 tests
test-measlesmixingriskquarantine.R 0 tests
test-measlesmixingriskquarantine.R 0 tests
test-measlesmixingriskquarantine.R 0 tests
test-measlesmixingriskquarantine.R 0 tests
test-measlesmixingriskquarantine.R 0 tests
test-measlesmixingriskquarantine.R 0 tests
test-measlesmixingriskquarantine.R 0 tests
test-measlesmixingriskquarantine.R 0 tests
test-measlesmixingriskquarantine.R 0 tests
test-measlesmixingriskquarantine.R 1 tests <1b>[0;32mOK<1b>[0m
test-measlesmixingriskquarantine.R 2 tests <1b>[0;32mOK<1b>[0m
test-measlesmixingriskquarantine.R 3 tests <1b>[0;32mOK<1b>[0m
test-measlesmixingriskquarantine.R 4 tests <1b>[0;32mOK<1b>[0m
test-measlesmixingriskquarantine.R 5 tests <1b>[0;32mOK<1b>[0m
test-measlesmixingriskquarantine.R 6 tests <1b>[0;32mOK<1b>[0m
test-measlesmixingriskquarantine.R 7 tests <1b>[0;32mOK<1b>[0m
test-measlesmixingriskquarantine.R 8 tests <1b>[0;32mOK<1b>[0m
test-measlesmixingriskquarantine.R 9 tests <1b>[0;32mOK<1b>[0m
test-measlesmixingriskquarantine.R 10 tests <1b>[0;32mOK<1b>[0m
test-measlesmixingriskquarantine.R 11 tests <1b>[0;32mOK<1b>[0m
test-measlesmixingriskquarantine.R 12 tests <1b>[0;32mOK<1b>[0m
test-measlesmixingriskquarantine.R 13 tests <1b>[0;32mOK<1b>[0m
test-measlesmixingriskquarantine.R 14 tests <1b>[0;32mOK<1b>[0m
test-measlesmixingriskquarantine.R 15 tests <1b>[0;32mOK<1b>[0m
test-measlesmixingriskquarantine.R 16 tests <1b>[0;32mOK<1b>[0m
test-measlesmixingriskquarantine.R 17 tests <1b>[0;32mOK<1b>[0m
test-measlesmixingriskquarantine.R 18 tests <1b>[0;32mOK<1b>[0m
test-measlesmixingriskquarantine.R 19 tests <1b>[0;32mOK<1b>[0m
test-measlesmixingriskquarantine.R 20 tests <1b>[0;32mOK<1b>[0m
test-measlesmixingriskquarantine.R 21 tests <1b>[0;32mOK<1b>[0m
test-measlesmixingriskquarantine.R 22 tests <1b>[0;32mOK<1b>[0m
test-measlesmixingriskquarantine.R 23 tests <1b>[0;32mOK<1b>[0m
test-measlesmixingriskquarantine.R 24 tests <1b>[0;32mOK<1b>[0m
test-measlesmixingriskquarantine.R 25 tests <1b>[0;32mOK<1b>[0m
test-measlesmixingriskquarantine.R 26 tests <1b>[0;32mOK<1b>[0m <1b>[0;34m0.1s<1b>[0m
test-model-diagram.R.......... 0 tests
test-model-diagram.R.......... 0 tests
test-model-diagram.R.......... 0 tests
test-model-diagram.R.......... 0 tests
test-model-diagram.R.......... 1 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 2 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 3 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 4 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 5 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 6 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 7 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 8 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 9 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 10 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 11 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 12 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 12 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 13 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 14 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 15 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 16 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 17 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 18 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 18 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 19 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 19 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 20 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 21 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 22 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 23 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 24 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 25 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 25 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 26 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 27 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 28 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 29 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 30 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 31 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 31 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 32 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 32 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 33 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 34 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 35 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 36 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 37 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 38 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 39 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 40 tests <1b>[0;32mOK<1b>[0m
test-model-diagram.R.......... 41 tests <1b>[0;32mOK<1b>[0m <1b>[0;34m0.1s<1b>[0m
test-model-methods.R.......... 0 tests
test-model-methods.R.......... 0 tests
test-model-methods.R.......... 0 tests
test-model-methods.R.......... 1 tests <1b>[0;32mOK<1b>[0m
test-model-methods.R.......... 2 tests <1b>[0;32mOK<1b>[0m
test-model-methods.R.......... 3 tests <1b>[0;31m1 fails<1b>[0m
test-model-methods.R.......... 4 tests <1b>[0;31m2 fails<1b>[0m
test-model-methods.R.......... 4 tests <1b>[0;31m2 fails<1b>[0m
test-model-methods.R.......... 5 tests <1b>[0;31m2 fails<1b>[0m
test-model-methods.R.......... 6 tests <1b>[0;31m2 fails<1b>[0m
test-model-methods.R.......... 7 tests <1b>[0;31m2 fails<1b>[0m
test-model-methods.R.......... 8 tests <1b>[0;31m2 fails<1b>[0m
test-model-methods.R.......... 9 tests <1b>[0;31m2 fails<1b>[0m <1b>[0;36m47ms<1b>[0m
test-multiple.R............... 0 tests
test-multiple.R............... 0 tests
test-multiple.R............... 0 tests
test-multiple.R............... 0 tests _________________________________________________________________________
|Running the model...
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| done.
|
test-multiple.R............... 0 tests
test-multiple.R............... 0 tests Starting multiple runs (50) using 2 thread(s)
_________________________________________________________________________
_________________________________________________________________________
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| done.
test-multiple.R............... 0 tests
test-multiple.R............... 0 tests
test-multiple.R............... 0 tests
test-multiple.R............... 0 tests
test-multiple.R............... 0 tests
test-multiple.R............... 1 tests <1b>[0;32mOK<1b>[0m
test-multiple.R............... 2 tests <1b>[0;32mOK<1b>[0m <1b>[0;34m4.6s<1b>[0m
test-seir.R................... 1 tests <1b>[0;32mOK<1b>[0m
test-seir.R................... 2 tests <1b>[0;32mOK<1b>[0m
test-seir.R................... 3 tests <1b>[0;32mOK<1b>[0m
test-seir.R................... 4 tests <1b>[0;32mOK<1b>[0m
test-seir.R................... 5 tests <1b>[0;32mOK<1b>[0m
test-seir.R................... 6 tests <1b>[0;32mOK<1b>[0m
test-seir.R................... 7 tests <1b>[0;32mOK<1b>[0m
test-seir.R................... 8 tests <1b>[0;32mOK<1b>[0m
test-seir.R................... 9 tests <1b>[0;32mOK<1b>[0m
test-seir.R................... 10 tests <1b>[0;32mOK<1b>[0m
test-seir.R................... 11 tests <1b>[0;32mOK<1b>[0m
test-seir.R................... 11 tests <1b>[0;32mOK<1b>[0m
test-seir.R................... 12 tests <1b>[0;32mOK<1b>[0m
test-seir.R................... 13 tests <1b>[0;32mOK<1b>[0m
test-seir.R................... 14 tests <1b>[0;32mOK<1b>[0m
test-seir.R................... 15 tests <1b>[0;32mOK<1b>[0m
test-seir.R................... 15 tests <1b>[0;32mOK<1b>[0m
test-seir.R................... 15 tests <1b>[0;32mOK<1b>[0m
test-seir.R................... 15 tests <1b>[0;32mOK<1b>[0m
test-seir.R................... 15 tests <1b>[0;32mOK<1b>[0m
test-seir.R................... 15 tests <1b>[0;32mOK<1b>[0m
test-seir.R................... 15 tests <1b>[0;32mOK<1b>[0m
test-seir.R................... 15 tests <1b>[0;32mOK<1b>[0m
test-seir.R................... 15 tests <1b>[0;32mOK<1b>[0m
test-seir.R................... 15 tests <1b>[0;32mOK<1b>[0m
test-seir.R................... 15 tests <1b>[0;32mOK<1b>[0m
test-seir.R................... 16 tests <1b>[0;32mOK<1b>[0m
test-seir.R................... 17 tests <1b>[0;32mOK<1b>[0m
test-seir.R................... 18 tests <1b>[0;32mOK<1b>[0m
test-seir.R................... 19 tests <1b>[0;32mOK<1b>[0m
test-seir.R................... 20 tests <1b>[0;32mOK<1b>[0m
test-seir.R................... 21 tests <1b>[0;32mOK<1b>[0m
test-seir.R................... 22 tests <1b>[0;32mOK<1b>[0m
test-seir.R................... 23 tests <1b>[0;32mOK<1b>[0m
test-seir.R................... 24 tests <1b>[0;32mOK<1b>[0m
test-seir.R................... 25 tests <1b>[0;32mOK<1b>[0m <1b>[0;34m0.1s<1b>[0m
test-seirconn.R............... 0 tests
test-seirconn.R............... 0 tests
test-seirconn.R............... 0 tests
test-seirconn.R............... 0 tests
test-seirconn.R............... 0 tests
test-seirconn.R............... 0 tests
test-seirconn.R............... 0 tests
test-seirconn.R............... 1 tests <1b>[0;32mOK<1b>[0m
test-seirconn.R............... 2 tests <1b>[0;32mOK<1b>[0m
test-seirconn.R............... 3 tests <1b>[0;32mOK<1b>[0m
test-seirconn.R............... 4 tests <1b>[0;32mOK<1b>[0m
test-seirconn.R............... 4 tests <1b>[0;32mOK<1b>[0m
test-seirconn.R............... 4 tests <1b>[0;32mOK<1b>[0m
test-seirconn.R............... 4 tests <1b>[0;32mOK<1b>[0m
test-seirconn.R............... 4 tests <1b>[0;32mOK<1b>[0m
test-seirconn.R............... 4 tests <1b>[0;32mOK<1b>[0m
test-seirconn.R............... 4 tests <1b>[0;32mOK<1b>[0m
test-seirconn.R............... 5 tests <1b>[0;32mOK<1b>[0m
test-seirconn.R............... 6 tests <1b>[0;32mOK<1b>[0m
test-seirconn.R............... 7 tests <1b>[0;32mOK<1b>[0m
test-seirconn.R............... 8 tests <1b>[0;32mOK<1b>[0m
test-seirconn.R............... 9 tests <1b>[0;32mOK<1b>[0m
test-seirconn.R............... 10 tests <1b>[0;32mOK<1b>[0m
test-seirconn.R............... 11 tests <1b>[0;32mOK<1b>[0m
test-seirconn.R............... 12 tests <1b>[0;32mOK<1b>[0m
test-seirconn.R............... 13 tests <1b>[0;32mOK<1b>[0m
test-seirconn.R............... 14 tests <1b>[0;32mOK<1b>[0m
test-seirconn.R............... 15 tests <1b>[0;32mOK<1b>[0m
test-seirconn.R............... 16 tests <1b>[0;32mOK<1b>[0m
test-seirconn.R............... 17 tests <1b>[0;32mOK<1b>[0m
test-seirconn.R............... 18 tests <1b>[0;32mOK<1b>[0m <1b>[0;36m20ms<1b>[0m
test-seird.R.................. 0 tests
test-seird.R.................. 0 tests
test-seird.R.................. 0 tests
test-seird.R.................. 0 tests
test-seird.R.................. 0 tests
test-seird.R.................. 0 tests
test-seird.R.................. 1 tests <1b>[0;32mOK<1b>[0m
test-seird.R.................. 2 tests <1b>[0;32mOK<1b>[0m
test-seird.R.................. 3 tests <1b>[0;32mOK<1b>[0m
test-seird.R.................. 4 tests <1b>[0;32mOK<1b>[0m
test-seird.R.................. 4 tests <1b>[0;32mOK<1b>[0m
test-seird.R.................. 4 tests <1b>[0;32mOK<1b>[0m
test-seird.R.................. 4 tests <1b>[0;32mOK<1b>[0m
test-seird.R.................. 4 tests <1b>[0;32mOK<1b>[0m
test-seird.R.................. 4 tests <1b>[0;32mOK<1b>[0m
test-seird.R.................. 5 tests <1b>[0;32mOK<1b>[0m
test-seird.R.................. 6 tests <1b>[0;32mOK<1b>[0m
test-seird.R.................. 7 tests <1b>[0;32mOK<1b>[0m
test-seird.R.................. 8 tests <1b>[0;32mOK<1b>[0m
test-seird.R.................. 9 tests <1b>[0;32mOK<1b>[0m
test-seird.R.................. 10 tests <1b>[0;32mOK<1b>[0m
test-seird.R.................. 11 tests <1b>[0;32mOK<1b>[0m
test-seird.R.................. 12 tests <1b>[0;32mOK<1b>[0m
test-seird.R.................. 13 tests <1b>[0;32mOK<1b>[0m
test-seird.R.................. 14 tests <1b>[0;32mOK<1b>[0m
test-seird.R.................. 15 tests <1b>[0;32mOK<1b>[0m
test-seird.R.................. 16 tests <1b>[0;32mOK<1b>[0m <1b>[0;36m17ms<1b>[0m
test-seirdconn.R.............. 0 tests
test-seirdconn.R.............. 0 tests
test-seirdconn.R.............. 0 tests
test-seirdconn.R.............. 0 tests
test-seirdconn.R.............. 0 tests
test-seirdconn.R.............. 0 tests
test-seirdconn.R.............. 0 tests
test-seirdconn.R.............. 0 tests
test-seirdconn.R.............. 1 tests <1b>[0;32mOK<1b>[0m
test-seirdconn.R.............. 2 tests <1b>[0;32mOK<1b>[0m
test-seirdconn.R.............. 3 tests <1b>[0;32mOK<1b>[0m
test-seirdconn.R.............. 4 tests <1b>[0;32mOK<1b>[0m
test-seirdconn.R.............. 4 tests <1b>[0;32mOK<1b>[0m
test-seirdconn.R.............. 4 tests <1b>[0;32mOK<1b>[0m
test-seirdconn.R.............. 4 tests <1b>[0;32mOK<1b>[0m
test-seirdconn.R.............. 4 tests <1b>[0;32mOK<1b>[0m
test-seirdconn.R.............. 4 tests <1b>[0;32mOK<1b>[0m
test-seirdconn.R.............. 4 tests <1b>[0;32mOK<1b>[0m
test-seirdconn.R.............. 5 tests <1b>[0;32mOK<1b>[0m
test-seirdconn.R.............. 6 tests <1b>[0;32mOK<1b>[0m
test-seirdconn.R.............. 7 tests <1b>[0;32mOK<1b>[0m
test-seirdconn.R.............. 8 tests <1b>[0;32mOK<1b>[0m
test-seirdconn.R.............. 9 tests <1b>[0;32mOK<1b>[0m
test-seirdconn.R.............. 10 tests <1b>[0;32mOK<1b>[0m
test-seirdconn.R.............. 11 tests <1b>[0;32mOK<1b>[0m
test-seirdconn.R.............. 12 tests <1b>[0;32mOK<1b>[0m
test-seirdconn.R.............. 13 tests <1b>[0;32mOK<1b>[0m
test-seirdconn.R.............. 14 tests <1b>[0;32mOK<1b>[0m
test-seirdconn.R.............. 15 tests <1b>[0;32mOK<1b>[0m
test-seirdconn.R.............. 16 tests <1b>[0;32mOK<1b>[0m
test-seirdconn.R.............. 17 tests <1b>[0;32mOK<1b>[0m
test-seirdconn.R.............. 18 tests <1b>[0;32mOK<1b>[0m
test-seirdconn.R.............. 19 tests <1b>[0;32mOK<1b>[0m
test-seirdconn.R.............. 20 tests <1b>[0;32mOK<1b>[0m <1b>[0;36m24ms<1b>[0m
test-seirmixing.R............. 0 tests
test-seirmixing.R............. 0 tests
test-seirmixing.R............. 0 tests
test-seirmixing.R............. 0 tests
test-seirmixing.R............. 0 tests
test-seirmixing.R............. 0 tests
test-seirmixing.R............. 0 tests
test-seirmixing.R............. 0 tests _________________________________________________________________________
Running the model...
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| done.
test-seirmixing.R............. 0 tests ________________________________________________________________________________
________________________________________________________________________________
SIMULATION STUDY
Name of the model : Susceptible-Exposed-Infected-Removed (SEIR) with Mixing
Population size : 9000
Agents' data : (none)
Number of entities : 3
Days (duration) : 100 (of 100)
Number of viruses : 1
Last run elapsed t : 76.00ms
Last run speed : 11.84 million agents x day / second
Rewiring : off
Global events:
- Update infected individuals (runs daily)
Virus(es):
- Flu
Tool(s):
(none)
Model parameters:
- Avg. Incubation days : 0.0090
- Contact rate : 40.0000
- Prob. Recovery : 0.1000
- Prob. Transmission : 1.0000
Distribution of the population at time 100:
- (0) Susceptible : 8999 -> 6000
- (1) Exposed : 1 -> 0
- (2) Infected : 0 -> 0
- (3) Recovered : 0 -> 3000
Transition Probabilities:
- Susceptible 1.00 0.00 - -
- Exposed - - 1.00 -
- Infected - - 0.90 0.10
- Recovered - - - 1.00
test-seirmixing.R............. 0 tests
test-seirmixing.R............. 0 tests
test-seirmixing.R............. 0 tests
test-seirmixing.R............. 0 tests
test-seirmixing.R............. 0 tests
test-seirmixing.R............. 0 tests
test-seirmixing.R............. 0 tests
test-seirmixing.R............. 0 tests
test-seirmixing.R............. 0 tests
test-seirmixing.R............. 0 tests
test-seirmixing.R............. 0 tests
test-seirmixing.R............. 0 tests
test-seirmixing.R............. 0 tests
test-seirmixing.R............. 0 tests
test-seirmixing.R............. 0 tests
test-seirmixing.R............. 0 tests
test-seirmixing.R............. 0 tests
test-seirmixing.R............. 0 tests
test-seirmixing.R............. 0 tests
test-seirmixing.R............. 0 tests
test-seirmixing.R............. 0 tests
test-seirmixing.R............. 0 tests
test-seirmixing.R............. 0 tests
test-seirmixing.R............. 0 tests
test-seirmixing.R............. 1 tests <1b>[0;32mOK<1b>[0m
test-seirmixing.R............. 2 tests <1b>[0;32mOK<1b>[0m
test-seirmixing.R............. 3 tests <1b>[0;32mOK<1b>[0m
test-seirmixing.R............. 4 tests <1b>[0;32mOK<1b>[0m
test-seirmixing.R............. 5 tests <1b>[0;32mOK<1b>[0m
test-seirmixing.R............. 6 tests <1b>[0;32mOK<1b>[0m
test-seirmixing.R............. 7 tests <1b>[0;32mOK<1b>[0m
test-seirmixing.R............. 8 tests <1b>[0;32mOK<1b>[0m
test-seirmixing.R............. 9 tests <1b>[0;32mOK<1b>[0m
test-seirmixing.R............. 10 tests <1b>[0;32mOK<1b>[0m
test-seirmixing.R............. 11 tests <1b>[0;32mOK<1b>[0m
test-seirmixing.R............. 12 tests <1b>[0;32mOK<1b>[0m
test-seirmixing.R............. 13 tests <1b>[0;32mOK<1b>[0m
test-seirmixing.R............. 14 tests <1b>[0;32mOK<1b>[0m
test-seirmixing.R............. 15 tests <1b>[0;32mOK<1b>[0m
test-seirmixing.R............. 16 tests <1b>[0;32mOK<1b>[0m <1b>[0;34m0.2s<1b>[0m
test-seirmixingquarantine.R... 0 tests
test-seirmixingquarantine.R... 0 tests
test-seirmixingquarantine.R... 0 tests
test-seirmixingquarantine.R... 0 tests
test-seirmixingquarantine.R... 0 tests
test-seirmixingquarantine.R... 0 tests
test-seirmixingquarantine.R... 0 tests
test-seirmixingquarantine.R... 0 tests _________________________________________________________________________
Running the model...
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| done.
test-seirmixingquarantine.R... 0 tests ________________________________________________________________________________
________________________________________________________________________________
SIMULATION STUDY
Name of the model : SEIR with Mixing and Quarantine
Population size : 9000
Agents' data : (none)
Number of entities : 3
Days (duration) : 100 (of 100)
Number of viruses : 1
Last run elapsed t : 66.00ms
Last run speed : 13.45 million agents x day / second
Rewiring : off
Global events:
- Update infected individuals (runs daily)
Virus(es):
- Flu
Tool(s):
(none)
Model parameters:
- Avg. Incubation days : 0.0090
- Contact rate : 40.0000
- Contact tracing days prior : 3.0000
- Contact tracing success rate : 0.7000
- Days undetected : 3.0000
- Hospitalization period : 7.0000
- Hospitalization rate : 0.0500
- Isolation period : 7.0000
- Isolation willingness : 0.5000
- Prob. Recovery : 0.1000
- Prob. Transmission : 1.0000
- Quarantine period : 14.0000
- Quarantine willingness : 0.8000
Distribution of the population at time 100:
- ( 0) Susceptible : 8999 -> 6000
- ( 1) Exposed : 1 -> 0
- ( 2) Infected : 0 -> 0
- ( 3) Isolated : 0 -> 0
- ( 4) Detected Hospitalized : 0 -> 0
- ( 5) Quarantined Susceptible : 0 -> 0
- ( 6) Quarantined Exposed : 0 -> 0
- ( 7) Isolated Recovered : 0 -> 0
- ( 8) Hospitalized : 0 -> 0
- ( 9) Recovered : 0 -> 3000
Transition Probabilities:
- Susceptible 1.00 0.00 - - - - 0.00 - - -
- Exposed - - 0.92 0.08 - - - - - -
- Infected - - 0.73 0.11 0.02 - - 0.01 0.03 0.09
- Isolated - - 0.15 0.71 0.04 - - 0.08 0.01 0.02
- Detected Hospitalized - - - - 0.86 - - - - 0.14
- Quarantined Susceptible - - - - - - - - - -
- Quarantined Exposed - - - 1.00 - - - - - -
- Isolated Recovered - - - - - - - 0.72 - 0.28
- Hospitalized - - - - - - - - 0.85 0.15
- Recovered - - - - - - - - - 1.00
test-seirmixingquarantine.R... 0 tests
test-seirmixingquarantine.R... 0 tests
test-seirmixingquarantine.R... 0 tests
test-seirmixingquarantine.R... 0 tests
test-seirmixingquarantine.R... 0 tests
test-seirmixingquarantine.R... 0 tests
test-seirmixingquarantine.R... 0 tests
test-seirmixingquarantine.R... 0 tests
test-seirmixingquarantine.R... 0 tests
test-seirmixingquarantine.R... 0 tests
test-seirmixingquarantine.R... 0 tests
test-seirmixingquarantine.R... 0 tests
test-seirmixingquarantine.R... 0 tests
test-seirmixingquarantine.R... 0 tests
test-seirmixingquarantine.R... 0 tests
test-seirmixingquarantine.R... 0 tests
test-seirmixingquarantine.R... 0 tests
test-seirmixingquarantine.R... 0 tests
test-seirmixingquarantine.R... 1 tests <1b>[0;32mOK<1b>[0m
test-seirmixingquarantine.R... 2 tests <1b>[0;32mOK<1b>[0m
test-seirmixingquarantine.R... 3 tests <1b>[0;32mOK<1b>[0m
test-seirmixingquarantine.R... 4 tests <1b>[0;32mOK<1b>[0m
test-seirmixingquarantine.R... 5 tests <1b>[0;32mOK<1b>[0m
test-seirmixingquarantine.R... 6 tests <1b>[0;32mOK<1b>[0m
test-seirmixingquarantine.R... 7 tests <1b>[0;32mOK<1b>[0m
test-seirmixingquarantine.R... 8 tests <1b>[0;32mOK<1b>[0m
test-seirmixingquarantine.R... 9 tests <1b>[0;32mOK<1b>[0m
test-seirmixingquarantine.R... 10 tests <1b>[0;32mOK<1b>[0m
test-seirmixingquarantine.R... 11 tests <1b>[0;32mOK<1b>[0m
test-seirmixingquarantine.R... 12 tests <1b>[0;32mOK<1b>[0m
test-seirmixingquarantine.R... 13 tests <1b>[0;32mOK<1b>[0m
test-seirmixingquarantine.R... 14 tests <1b>[0;32mOK<1b>[0m
test-seirmixingquarantine.R... 15 tests <1b>[0;32mOK<1b>[0m
test-seirmixingquarantine.R... 16 tests <1b>[0;32mOK<1b>[0m
test-seirmixingquarantine.R... 17 tests <1b>[0;32mOK<1b>[0m
test-seirmixingquarantine.R... 18 tests <1b>[0;32mOK<1b>[0m
test-seirmixingquarantine.R... 19 tests <1b>[0;32mOK<1b>[0m <1b>[0;34m0.2s<1b>[0m
test-sir.R.................... 1 tests <1b>[0;32mOK<1b>[0m
test-sir.R.................... 2 tests <1b>[0;32mOK<1b>[0m
test-sir.R.................... 3 tests <1b>[0;32mOK<1b>[0m
test-sir.R.................... 4 tests <1b>[0;32mOK<1b>[0m
test-sir.R.................... 5 tests <1b>[0;32mOK<1b>[0m
test-sir.R.................... 6 tests <1b>[0;32mOK<1b>[0m
test-sir.R.................... 7 tests <1b>[0;32mOK<1b>[0m
test-sir.R.................... 8 tests <1b>[0;32mOK<1b>[0m
test-sir.R.................... 9 tests <1b>[0;32mOK<1b>[0m
test-sir.R.................... 9 tests <1b>[0;32mOK<1b>[0m
test-sir.R.................... 9 tests <1b>[0;32mOK<1b>[0m
test-sir.R.................... 10 tests <1b>[0;32mOK<1b>[0m
test-sir.R.................... 10 tests <1b>[0;32mOK<1b>[0m
test-sir.R.................... 10 tests <1b>[0;32mOK<1b>[0m
test-sir.R.................... 11 tests <1b>[0;32mOK<1b>[0m
test-sir.R.................... 11 tests <1b>[0;32mOK<1b>[0m
test-sir.R.................... 11 tests <1b>[0;32mOK<1b>[0m
test-sir.R.................... 11 tests <1b>[0;32mOK<1b>[0m
test-sir.R.................... 12 tests <1b>[0;32mOK<1b>[0m
test-sir.R.................... 12 tests <1b>[0;32mOK<1b>[0m
test-sir.R.................... 12 tests <1b>[0;32mOK<1b>[0m
test-sir.R.................... 12 tests <1b>[0;32mOK<1b>[0m
test-sir.R.................... 12 tests <1b>[0;32mOK<1b>[0m
test-sir.R.................... 12 tests <1b>[0;32mOK<1b>[0m
test-sir.R.................... 12 tests <1b>[0;32mOK<1b>[0m
test-sir.R.................... 12 tests <1b>[0;32mOK<1b>[0m
test-sir.R.................... 12 tests <1b>[0;32mOK<1b>[0m
test-sir.R.................... 12 tests <1b>[0;32mOK<1b>[0m
test-sir.R.................... 13 tests <1b>[0;32mOK<1b>[0m
test-sir.R.................... 14 tests <1b>[0;32mOK<1b>[0m
test-sir.R.................... 15 tests <1b>[0;32mOK<1b>[0m
test-sir.R.................... 16 tests <1b>[0;32mOK<1b>[0m
test-sir.R.................... 17 tests <1b>[0;32mOK<1b>[0m
test-sir.R.................... 18 tests <1b>[0;32mOK<1b>[0m
test-sir.R.................... 19 tests <1b>[0;32mOK<1b>[0m
test-sir.R.................... 20 tests <1b>[0;32mOK<1b>[0m <1b>[0;34m1.0s<1b>[0m
test-sirconn.R................ 1 tests <1b>[0;32mOK<1b>[0m
test-sirconn.R................ 2 tests <1b>[0;32mOK<1b>[0m
test-sirconn.R................ 3 tests <1b>[0;32mOK<1b>[0m
test-sirconn.R................ 4 tests <1b>[0;32mOK<1b>[0m
test-sirconn.R................ 5 tests <1b>[0;32mOK<1b>[0m
test-sirconn.R................ 6 tests <1b>[0;32mOK<1b>[0m
test-sirconn.R................ 7 tests <1b>[0;32mOK<1b>[0m
test-sirconn.R................ 8 tests <1b>[0;32mOK<1b>[0m
test-sirconn.R................ 9 tests <1b>[0;32mOK<1b>[0m
test-sirconn.R................ 9 tests <1b>[0;32mOK<1b>[0m
test-sirconn.R................ 9 tests <1b>[0;32mOK<1b>[0m
test-sirconn.R................ 9 tests <1b>[0;32mOK<1b>[0m
test-sirconn.R................ 10 tests <1b>[0;32mOK<1b>[0m
test-sirconn.R................ 10 tests <1b>[0;32mOK<1b>[0m
test-sirconn.R................ 10 tests <1b>[0;32mOK<1b>[0m
test-sirconn.R................ 10 tests <1b>[0;32mOK<1b>[0m
test-sirconn.R................ 11 tests <1b>[0;32mOK<1b>[0m
test-sirconn.R................ 12 tests <1b>[0;32mOK<1b>[0m
test-sirconn.R................ 12 tests <1b>[0;32mOK<1b>[0m
test-sirconn.R................ 12 tests <1b>[0;32mOK<1b>[0m
test-sirconn.R................ 12 tests <1b>[0;32mOK<1b>[0m
test-sirconn.R................ 12 tests <1b>[0;32mOK<1b>[0m
test-sirconn.R................ 12 tests <1b>[0;32mOK<1b>[0m
test-sirconn.R................ 12 tests <1b>[0;32mOK<1b>[0m
test-sirconn.R................ 12 tests <1b>[0;32mOK<1b>[0m
test-sirconn.R................ 12 tests <1b>[0;32mOK<1b>[0m
test-sirconn.R................ 12 tests <1b>[0;32mOK<1b>[0m
test-sirconn.R................ 12 tests <1b>[0;32mOK<1b>[0m
test-sirconn.R................ 12 tests <1b>[0;32mOK<1b>[0m
test-sirconn.R................ 12 tests <1b>[0;32mOK<1b>[0m
test-sirconn.R................ 13 tests <1b>[0;32mOK<1b>[0m
test-sirconn.R................ 14 tests <1b>[0;32mOK<1b>[0m
test-sirconn.R................ 15 tests <1b>[0;32mOK<1b>[0m
test-sirconn.R................ 16 tests <1b>[0;32mOK<1b>[0m
test-sirconn.R................ 17 tests <1b>[0;32mOK<1b>[0m
test-sirconn.R................ 18 tests <1b>[0;32mOK<1b>[0m <1b>[0;34m0.1s<1b>[0m
test-sird.R................... 1 tests <1b>[0;32mOK<1b>[0m
test-sird.R................... 2 tests <1b>[0;32mOK<1b>[0m
test-sird.R................... 3 tests <1b>[0;32mOK<1b>[0m
test-sird.R................... 4 tests <1b>[0;32mOK<1b>[0m
test-sird.R................... 5 tests <1b>[0;32mOK<1b>[0m
test-sird.R................... 6 tests <1b>[0;32mOK<1b>[0m
test-sird.R................... 7 tests <1b>[0;32mOK<1b>[0m
test-sird.R................... 8 tests <1b>[0;32mOK<1b>[0m
test-sird.R................... 9 tests <1b>[0;32mOK<1b>[0m
test-sird.R................... 10 tests <1b>[0;32mOK<1b>[0m
test-sird.R................... 10 tests <1b>[0;32mOK<1b>[0m
test-sird.R................... 11 tests <1b>[0;32mOK<1b>[0m
test-sird.R................... 12 tests <1b>[0;32mOK<1b>[0m
test-sird.R................... 13 tests <1b>[0;32mOK<1b>[0m
test-sird.R................... 14 tests <1b>[0;32mOK<1b>[0m
test-sird.R................... 14 tests <1b>[0;32mOK<1b>[0m
test-sird.R................... 14 tests <1b>[0;32mOK<1b>[0m
test-sird.R................... 14 tests <1b>[0;32mOK<1b>[0m
test-sird.R................... 14 tests <1b>[0;32mOK<1b>[0m
test-sird.R................... 14 tests <1b>[0;32mOK<1b>[0m
test-sird.R................... 14 tests <1b>[0;32mOK<1b>[0m
test-sird.R................... 14 tests <1b>[0;32mOK<1b>[0m
test-sird.R................... 14 tests <1b>[0;32mOK<1b>[0m
test-sird.R................... 14 tests <1b>[0;32mOK<1b>[0m
test-sird.R................... 15 tests <1b>[0;32mOK<1b>[0m
test-sird.R................... 16 tests <1b>[0;32mOK<1b>[0m
test-sird.R................... 17 tests <1b>[0;32mOK<1b>[0m
test-sird.R................... 18 tests <1b>[0;32mOK<1b>[0m
test-sird.R................... 19 tests <1b>[0;32mOK<1b>[0m <1b>[0;36m93ms<1b>[0m
test-sirdconn.R............... 0 tests
test-sirdconn.R............... 0 tests
test-sirdconn.R............... 0 tests
test-sirdconn.R............... 0 tests
test-sirdconn.R............... 0 tests
test-sirdconn.R............... 0 tests
test-sirdconn.R............... 0 tests
test-sirdconn.R............... 1 tests <1b>[0;32mOK<1b>[0m
test-sirdconn.R............... 2 tests <1b>[0;32mOK<1b>[0m
test-sirdconn.R............... 3 tests <1b>[0;32mOK<1b>[0m
test-sirdconn.R............... 4 tests <1b>[0;32mOK<1b>[0m
test-sirdconn.R............... 4 tests <1b>[0;32mOK<1b>[0m
test-sirdconn.R............... 4 tests <1b>[0;32mOK<1b>[0m
test-sirdconn.R............... 4 tests <1b>[0;32mOK<1b>[0m
test-sirdconn.R............... 4 tests <1b>[0;32mOK<1b>[0m
test-sirdconn.R............... 4 tests <1b>[0;32mOK<1b>[0m
test-sirdconn.R............... 5 tests <1b>[0;32mOK<1b>[0m
test-sirdconn.R............... 6 tests <1b>[0;32mOK<1b>[0m
test-sirdconn.R............... 7 tests <1b>[0;32mOK<1b>[0m
test-sirdconn.R............... 8 tests <1b>[0;32mOK<1b>[0m
test-sirdconn.R............... 9 tests <1b>[0;32mOK<1b>[0m
test-sirdconn.R............... 10 tests <1b>[0;32mOK<1b>[0m
test-sirdconn.R............... 11 tests <1b>[0;32mOK<1b>[0m <1b>[0;36m13ms<1b>[0m
test-sirlogit.R............... 0 tests
test-sirlogit.R............... 0 tests
test-sirlogit.R............... 0 tests
test-sirlogit.R............... 0 tests
test-sirlogit.R............... 0 tests
test-sirlogit.R............... 0 tests
test-sirlogit.R............... 0 tests
test-sirlogit.R............... 0 tests
test-sirlogit.R............... 0 tests
test-sirlogit.R............... 0 tests
test-sirlogit.R............... 1 tests <1b>[0;32mOK<1b>[0m
test-sirlogit.R............... 2 tests <1b>[0;32mOK<1b>[0m
test-sirlogit.R............... 3 tests <1b>[0;32mOK<1b>[0m
test-sirlogit.R............... 3 tests <1b>[0;32mOK<1b>[0m
test-sirlogit.R............... 3 tests <1b>[0;32mOK<1b>[0m
test-sirlogit.R............... 3 tests <1b>[0;32mOK<1b>[0m
test-sirlogit.R............... 3 tests <1b>[0;32mOK<1b>[0m
test-sirlogit.R............... 3 tests <1b>[0;32mOK<1b>[0m
test-sirlogit.R............... 3 tests <1b>[0;32mOK<1b>[0m
test-sirlogit.R............... 3 tests <1b>[0;32mOK<1b>[0m
test-sirlogit.R............... 3 tests <1b>[0;32mOK<1b>[0m
test-sirlogit.R............... 3 tests <1b>[0;32mOK<1b>[0m
test-sirlogit.R............... 3 tests <1b>[0;32mOK<1b>[0m
test-sirlogit.R............... 3 tests <1b>[0;32mOK<1b>[0m
test-sirlogit.R............... 4 tests <1b>[0;32mOK<1b>[0m
test-sirlogit.R............... 5 tests <1b>[0;32mOK<1b>[0m
test-sirlogit.R............... 6 tests <1b>[0;32mOK<1b>[0m
test-sirlogit.R............... 7 tests <1b>[0;32mOK<1b>[0m
test-sirlogit.R............... 8 tests <1b>[0;32mOK<1b>[0m
test-sirlogit.R............... 9 tests <1b>[0;32mOK<1b>[0m
test-sirlogit.R............... 10 tests <1b>[0;32mOK<1b>[0m
test-sirlogit.R............... 11 tests <1b>[0;32mOK<1b>[0m
test-sirlogit.R............... 12 tests <1b>[0;32mOK<1b>[0m <1b>[0;36m39ms<1b>[0m
test-sirmixing.R.............. 0 tests
test-sirmixing.R.............. 0 tests
test-sirmixing.R.............. 0 tests
test-sirmixing.R.............. 0 tests
test-sirmixing.R.............. 0 tests
test-sirmixing.R.............. 0 tests
test-sirmixing.R.............. 0 tests
test-sirmixing.R.............. 1 tests <1b>[0;32mOK<1b>[0m
test-sirmixing.R.............. 2 tests <1b>[0;32mOK<1b>[0m
test-sirmixing.R.............. 3 tests <1b>[0;32mOK<1b>[0m
test-sirmixing.R.............. 4 tests <1b>[0;32mOK<1b>[0m
test-sirmixing.R.............. 4 tests <1b>[0;32mOK<1b>[0m
test-sirmixing.R.............. 4 tests <1b>[0;32mOK<1b>[0m
test-sirmixing.R.............. 4 tests <1b>[0;32mOK<1b>[0m
test-sirmixing.R.............. 4 tests <1b>[0;32mOK<1b>[0m
test-sirmixing.R.............. 4 tests <1b>[0;32mOK<1b>[0m
test-sirmixing.R.............. 4 tests <1b>[0;32mOK<1b>[0m
test-sirmixing.R.............. 4 tests <1b>[0;32mOK<1b>[0m
test-sirmixing.R.............. 5 tests <1b>[0;32mOK<1b>[0m
test-sirmixing.R.............. 6 tests <1b>[0;32mOK<1b>[0m
test-sirmixing.R.............. 7 tests <1b>[0;32mOK<1b>[0m
test-sirmixing.R.............. 8 tests <1b>[0;32mOK<1b>[0m
test-sirmixing.R.............. 9 tests <1b>[0;32mOK<1b>[0m
test-sirmixing.R.............. 10 tests <1b>[0;32mOK<1b>[0m
test-sirmixing.R.............. 11 tests <1b>[0;32mOK<1b>[0m <1b>[0;36m16ms<1b>[0m
test-sis.R.................... 1 tests <1b>[0;32mOK<1b>[0m
test-sis.R.................... 2 tests <1b>[0;32mOK<1b>[0m
test-sis.R.................... 3 tests <1b>[0;32mOK<1b>[0m
test-sis.R.................... 4 tests <1b>[0;32mOK<1b>[0m
test-sis.R.................... 5 tests <1b>[0;32mOK<1b>[0m
test-sis.R.................... 6 tests <1b>[0;32mOK<1b>[0m
test-sis.R.................... 7 tests <1b>[0;32mOK<1b>[0m
test-sis.R.................... 8 tests <1b>[0;32mOK<1b>[0m
test-sis.R.................... 9 tests <1b>[0;32mOK<1b>[0m
test-sis.R.................... 9 tests <1b>[0;32mOK<1b>[0m
test-sis.R.................... 9 tests <1b>[0;32mOK<1b>[0m
test-sis.R.................... 9 tests <1b>[0;32mOK<1b>[0m
test-sis.R.................... 9 tests <1b>[0;32mOK<1b>[0m
test-sis.R.................... 9 tests <1b>[0;32mOK<1b>[0m
test-sis.R.................... 9 tests <1b>[0;32mOK<1b>[0m
test-sis.R.................... 9 tests <1b>[0;32mOK<1b>[0m
test-sis.R.................... 9 tests <1b>[0;32mOK<1b>[0m
test-sis.R.................... 10 tests <1b>[0;32mOK<1b>[0m
test-sis.R.................... 11 tests <1b>[0;32mOK<1b>[0m
test-sis.R.................... 12 tests <1b>[0;32mOK<1b>[0m
test-sis.R.................... 13 tests <1b>[0;32mOK<1b>[0m <1b>[0;34m0.9s<1b>[0m
test-sisd.R................... 0 tests
test-sisd.R................... 0 tests
test-sisd.R................... 0 tests
test-sisd.R................... 0 tests
test-sisd.R................... 0 tests
test-sisd.R................... 1 tests <1b>[0;32mOK<1b>[0m
test-sisd.R................... 2 tests <1b>[0;32mOK<1b>[0m
test-sisd.R................... 3 tests <1b>[0;32mOK<1b>[0m
test-sisd.R................... 4 tests <1b>[0;32mOK<1b>[0m
test-sisd.R................... 4 tests <1b>[0;32mOK<1b>[0m
test-sisd.R................... 4 tests <1b>[0;32mOK<1b>[0m
test-sisd.R................... 4 tests <1b>[0;32mOK<1b>[0m
test-sisd.R................... 4 tests <1b>[0;32mOK<1b>[0m
test-sisd.R................... 5 tests <1b>[0;32mOK<1b>[0m
test-sisd.R................... 6 tests <1b>[0;32mOK<1b>[0m
test-sisd.R................... 7 tests <1b>[0;32mOK<1b>[0m
test-sisd.R................... 8 tests <1b>[0;32mOK<1b>[0m
test-sisd.R................... 9 tests <1b>[0;32mOK<1b>[0m <1b>[0;36m11ms<1b>[0m
test-surv.R................... 0 tests
test-surv.R................... 0 tests
test-surv.R................... 0 tests
test-surv.R................... 0 tests
test-surv.R................... 0 tests
test-surv.R................... 0 tests
test-surv.R................... 0 tests
test-surv.R................... 0 tests
test-surv.R................... 0 tests
test-surv.R................... 0 tests
test-surv.R................... 0 tests
test-surv.R................... 0 tests
test-surv.R................... 0 tests
test-surv.R................... 1 tests <1b>[0;32mOK<1b>[0m
test-surv.R................... 2 tests <1b>[0;32mOK<1b>[0m
test-surv.R................... 3 tests <1b>[0;32mOK<1b>[0m
test-surv.R................... 4 tests <1b>[0;32mOK<1b>[0m
test-surv.R................... 4 tests <1b>[0;32mOK<1b>[0m
test-surv.R................... 4 tests <1b>[0;32mOK<1b>[0m
test-surv.R................... 4 tests <1b>[0;32mOK<1b>[0m
test-surv.R................... 4 tests <1b>[0;32mOK<1b>[0m
test-surv.R................... 5 tests <1b>[0;32mOK<1b>[0m
test-surv.R................... 6 tests <1b>[0;32mOK<1b>[0m
test-surv.R................... 7 tests <1b>[0;32mOK<1b>[0m
test-surv.R................... 8 tests <1b>[0;32mOK<1b>[0m
test-surv.R................... 9 tests <1b>[0;32mOK<1b>[0m
test-surv.R................... 10 tests <1b>[0;32mOK<1b>[0m
test-surv.R................... 11 tests <1b>[0;32mOK<1b>[0m
test-surv.R................... 12 tests <1b>[0;32mOK<1b>[0m
test-surv.R................... 13 tests <1b>[0;32mOK<1b>[0m
test-surv.R................... 14 tests <1b>[0;32mOK<1b>[0m
test-surv.R................... 15 tests <1b>[0;32mOK<1b>[0m
test-surv.R................... 16 tests <1b>[0;32mOK<1b>[0m
test-surv.R................... 17 tests <1b>[0;32mOK<1b>[0m <1b>[0;36m21ms<1b>[0m
test-tool.R................... 0 tests
test-tool.R................... 1 tests <1b>[0;32mOK<1b>[0m
test-tool.R................... 2 tests <1b>[0;32mOK<1b>[0m
test-tool.R................... 3 tests <1b>[0;32mOK<1b>[0m
test-tool.R................... 4 tests <1b>[0;32mOK<1b>[0m
test-tool.R................... 5 tests <1b>[0;32mOK<1b>[0m
test-tool.R................... 5 tests <1b>[0;32mOK<1b>[0m
test-tool.R................... 6 tests <1b>[0;32mOK<1b>[0m
test-tool.R................... 7 tests <1b>[0;32mOK<1b>[0m
test-tool.R................... 8 tests <1b>[0;32mOK<1b>[0m
test-tool.R................... 8 tests <1b>[0;32mOK<1b>[0m
test-tool.R................... 9 tests <1b>[0;32mOK<1b>[0m
test-tool.R................... 10 tests <1b>[0;32mOK<1b>[0m
test-tool.R................... 11 tests <1b>[0;32mOK<1b>[0m
test-tool.R................... 12 tests <1b>[0;32mOK<1b>[0m
test-tool.R................... 13 tests <1b>[0;32mOK<1b>[0m
test-tool.R................... 14 tests <1b>[0;32mOK<1b>[0m
test-tool.R................... 15 tests <1b>[0;32mOK<1b>[0m
test-tool.R................... 16 tests <1b>[0;32mOK<1b>[0m
test-tool.R................... 17 tests <1b>[0;32mOK<1b>[0m
test-tool.R................... 18 tests <1b>[0;32mOK<1b>[0m <1b>[0;36m9ms<1b>[0m
test-virus.R.................. 1 tests <1b>[0;32mOK<1b>[0m
test-virus.R.................. 2 tests <1b>[0;32mOK<1b>[0m
test-virus.R.................. 3 tests <1b>[0;32mOK<1b>[0m
test-virus.R.................. 4 tests <1b>[0;32mOK<1b>[0m <1b>[0;36m9ms<1b>[0m
----- FAILED[xcpt]: test-model-methods.R<19--22>
call| expect_message(md_with_output <- draw_mermaid(model, output_file = "mermaid_diagram.txt"),
call| --> "Diagram written")
diff| No message was emitted
diff| Found 0 message(s), 0 warning(s), and 1 error(s):
diff|
diff| ERR: Could not open the file mermaid_diagram.txt for writing.
----- FAILED[data]: test-model-methods.R<25--25>
call| expect_true(file.exists("mermaid_diagram.txt"))
diff| Expected TRUE, got FALSE
Error: 2 out of 511 tests failed
In addition: Warning message:
In file.remove("mermaid_diagram.txt") :
cannot remove file 'mermaid_diagram.txt', reason 'Read-only file system'
Execution halted
Flavor: r-release-linux-x86_64
Version: 0.10.0.0
Check: installed package size
Result: NOTE
installed size is 21.0Mb
sub-directories of 1Mb or more:
doc 1.9Mb
help 1.3Mb
libs 16.5Mb
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Current CRAN status: NOTE: 2, OK: 11
Version: 0.5-2
Check: DESCRIPTION meta-information
Result: NOTE
Author field differs from that derived from Authors@R
Author: ‘George Vega Yon [aut, cre] (<https://orcid.org/0000-0002-3171-0844>), Paul Marjoram [ctb, ths] (<https://orcid.org/0000-0003-0824-7449>), National Cancer Institute (NCI) [fnd] (Grant Number 5P01CA196569-02), Fabian Scheipl [rev] (JOSS reviewer, <https://orcid.org/0000-0001-8172-3603>)’
Authors@R: ‘George Vega Yon [aut, cre] (ORCID: <https://orcid.org/0000-0002-3171-0844>), Paul Marjoram [ctb, ths] (ORCID: <https://orcid.org/0000-0003-0824-7449>), National Cancer Institute (NCI) [fnd] (Grant Number 5P01CA196569-02), Fabian Scheipl [rev] (what: JOSS reviewer, ORCID: <https://orcid.org/0000-0001-8172-3603>)’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Current CRAN status: NOTE: 2, OK: 11
Version: 0.16.1
Check: CRAN incoming feasibility
Result: NOTE
Maintainer: ‘George Vega Yon <g.vegayon@gmail.com>’
Found the following (possibly) invalid file URI:
URI: publicdata.google.com
From: man/dspl.Rd
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Current CRAN status: OK: 13
Current CRAN status: NOTE: 2, OK: 11
Version: 0.16.3
Check: DESCRIPTION meta-information
Result: NOTE
Author field differs from that derived from Authors@R
Author: ‘George Vega Yon [aut, cre] (<https://orcid.org/0000-0002-3171-0844>), Jorge Fábrega Lacoa [ctb], Joshua Kunst [ctb], Raphaël Velt [cph] (gexf-js library), Gephi Consortium [cph] (GEXF language), Cornelius Fritz [rev] (JOSS reviewer), Jonathan Cardoso Silva [rev] (JOSS reviewer)’
Authors@R: ‘George Vega Yon [aut, cre] (ORCID: <https://orcid.org/0000-0002-3171-0844>), Jorge Fábrega Lacoa [ctb], Joshua Kunst [ctb], Raphaël Velt [cph] (gexf-js library), Gephi Consortium [cph] (GEXF language), Cornelius Fritz [rev] (what: JOSS reviewer), Jonathan Cardoso Silva [rev] (what: JOSS reviewer)’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Current CRAN status: NOTE: 2, OK: 11
Version: 0.5-4
Check: DESCRIPTION meta-information
Result: NOTE
Author field differs from that derived from Authors@R
Author: ‘George Vega Yon [aut, cre] (<https://orcid.org/0000-0002-3171-0844>), Paul Marjoram [ctb, ths] (<https://orcid.org/0000-0003-0824-7449>), National Cancer Institute (NCI) [fnd] (Grant Number 5P01CA196569-02), Michael Schubert [rev] (JOSS reviewer, <https://orcid.org/0000-0002-6862-5221>), Michel Lang [rev] (JOSS reviewer, <https://orcid.org/0000-0001-9754-0393>)’
Authors@R: ‘George Vega Yon [aut, cre] (ORCID: <https://orcid.org/0000-0002-3171-0844>), Paul Marjoram [ctb, ths] (ORCID: <https://orcid.org/0000-0003-0824-7449>), National Cancer Institute (NCI) [fnd] (Grant Number 5P01CA196569-02), Michael Schubert [rev] (what: JOSS reviewer, ORCID: <https://orcid.org/0000-0002-6862-5221>), Michel Lang [rev] (what: JOSS reviewer, ORCID: <https://orcid.org/0000-0001-9754-0393>)’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
Health stats visible at Monitor.