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freesurfer: Wrapper Functions for 'Freesurfer'

Wrapper functions that interface with 'Freesurfer' <https://surfer.nmr.mgh.harvard.edu/>, a powerful and commonly-used 'neuroimaging' software, using system commands. The goal is to be able to interface with 'Freesurfer' completely in R, where you pass R objects of class 'nifti', implemented by package 'oro.nifti', and the function executes an 'Freesurfer' command and returns an R object of class 'nifti' or necessary output.

Version: 1.6.10
Depends: R (≥ 3.2.0)
Imports: methods, neurobase, tools, R.utils, reshape2, utils
Suggests: magrittr, knitr, oro.nifti (≥ 0.7), rgl, rmarkdown, pander, fslr (≥ 2.9.2)
Published: 2024-05-14
DOI: 10.32614/CRAN.package.freesurfer
Author: John Muschelli ORCID iD [aut, cre], Athanasia Mo Mowinckel ORCID iD [ctb]
Maintainer: John Muschelli <muschellij2 at gmail.com>
BugReports: https://github.com/muschellij2/freesurfer/issues
License: GPL-3
NeedsCompilation: no
SystemRequirements: FSL, Freesurfer (https://surfer.nmr.mgh.harvard.edu/)
Citation: freesurfer citation info
Materials: README NEWS
CRAN checks: freesurfer results

Documentation:

Reference manual: freesurfer.pdf
Vignettes: Exploring Included Subject Freesurfer Data

Downloads:

Package source: freesurfer_1.6.10.tar.gz
Windows binaries: r-devel: freesurfer_1.6.10.zip, r-release: freesurfer_1.6.10.zip, r-oldrel: freesurfer_1.6.10.zip
macOS binaries: r-release (arm64): freesurfer_1.6.10.tgz, r-oldrel (arm64): freesurfer_1.6.10.tgz, r-release (x86_64): freesurfer_1.6.10.tgz, r-oldrel (x86_64): freesurfer_1.6.10.tgz
Old sources: freesurfer archive

Linking:

Please use the canonical form https://CRAN.R-project.org/package=freesurfer to link to this page.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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