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Last updated on 2026-11-10 23:54:12 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 3.2.3 | 3.46 | 133.05 | 136.51 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 3.2.3 | 3.15 | 108.46 | 111.61 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 3.2.3 | ERROR | ||||
| r-devel-linux-x86_64-fedora-gcc | 3.2.3 | 104.28 | ERROR | |||
| r-devel-windows-x86_64 | 3.2.3 | 6.00 | 139.00 | 145.00 | OK | |
| r-patched-linux-x86_64 | 3.2.3 | OK | ||||
| r-release-linux-x86_64 | 3.2.3 | 3.53 | 149.31 | 152.84 | OK | |
| r-release-macos-arm64 | 3.2.3 | 1.00 | 48.00 | 49.00 | OK | |
| r-release-macos-x86_64 | 3.2.3 | 3.00 | 144.00 | 147.00 | OK | |
| r-release-windows-x86_64 | 3.2.3 | 6.00 | 138.00 | 144.00 | OK | |
| r-oldrel-macos-arm64 | 3.2.3 | OK | ||||
| r-oldrel-macos-x86_64 | 3.2.3 | 3.00 | 141.00 | 144.00 | OK | |
| r-oldrel-windows-x86_64 | 3.2.3 | 8.00 | 173.00 | 181.00 | OK |
Version: 3.2.3
Check: tests
Result: ERROR
Running ‘test.R’ [89s/95s]
Running the tests in ‘tests/test.R’ failed.
Complete output:
> library(testthat)
> library(mockr)
Attaching package: 'mockr'
The following objects are masked from 'package:testthat':
local_mock, with_mock
> library(corehunter)
Loading required package: rJava
>
> test_check("corehunter")
Saving _problems/testData-117.R
Saving _problems/testData-118.R
Saving _problems/testData-482.R
Saving _problems/testData-483.R
Saving _problems/testData-485.R
Saving _problems/testData-493.R
Saving _problems/testData-494.R
Saving _problems/testData-496.R
Saving _problems/testData-504.R
Saving _problems/testData-505.R
Saving _problems/testData-507.R
[ FAIL 11 | WARN 17 | SKIP 1 | PASS 2411 ]
══ Skipped tests (1) ═══════════════════════════════════════════════════════════
• empty test (1):
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('testData.R:117:3'): print ─────────────────────────────────────────
Expected output from `print(data)` to match regexp "Ids: chr \\[1:5\\] \"Alice\" \"Dave\" \"Bob\" \"Bob'\" \"Carol\"".
Actual output:
✖ │ # Precomputed distance matrix
│
│ Number of accessions = 5
│ Ids:chr [1:5] "Alice" "Dave" "Bob" "Bob'" "Carol"
│ Names:chr [1:5] "Alice" "Dave" "Bob" "Bob" "Carol"
│
│ Read from file: "/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/corehunter.Rcheck/tests/testthat/data/distances-small.txt"
── Failure ('testData.R:118:3'): print ─────────────────────────────────────────
Expected output from `print(data)` to match regexp "Names: chr \\[1:5\\] \"Alice\" \"Dave\" \"Bob\" \"Bob\" \"Carol\"".
Actual output:
✖ │ # Precomputed distance matrix
│
│ Number of accessions = 5
│ Ids:chr [1:5] "Alice" "Dave" "Bob" "Bob'" "Carol"
│ Names:chr [1:5] "Alice" "Dave" "Bob" "Bob" "Carol"
│
│ Read from file: "/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/corehunter.Rcheck/tests/testthat/data/distances-small.txt"
── Failure ('testData.R:482:3'): print ─────────────────────────────────────────
Expected output from `print(data)` to match regexp "Ids: chr \\[1:5\\] \"Alice\" \"Dave\" \"Bob\" \"Bob'\" \"Carol\"".
Actual output:
✖ │ # Genotypes
│
│ Format = default
│
│ Number of accessions = 5
│ Ids:chr [1:5] "Alice" "Dave" "Bob" "Bob'" "Carol"
│ Names:chr [1:5] "Alice" "Dave" "Bob" "Bob" "Carol"
│
│ Number of markers = 4
│ Marker names:chr [1:4] "mk1" "mk,2" "mk'3" "mk4"
│ Number of alleles per marker = 2-4
│
│ Read from file: "/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/corehunter.Rcheck/tests/testthat/data/genotypes-small.csv"
── Failure ('testData.R:483:3'): print ─────────────────────────────────────────
Expected output from `print(data)` to match regexp "Names: chr \\[1:5\\] \"Alice\" \"Dave\" \"Bob\" \"Bob\" \"Carol\"".
Actual output:
✖ │ # Genotypes
│
│ Format = default
│
│ Number of accessions = 5
│ Ids:chr [1:5] "Alice" "Dave" "Bob" "Bob'" "Carol"
│ Names:chr [1:5] "Alice" "Dave" "Bob" "Bob" "Carol"
│
│ Number of markers = 4
│ Marker names:chr [1:4] "mk1" "mk,2" "mk'3" "mk4"
│ Number of alleles per marker = 2-4
│
│ Read from file: "/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/corehunter.Rcheck/tests/testthat/data/genotypes-small.csv"
── Failure ('testData.R:485:3'): print ─────────────────────────────────────────
Expected output from `print(data)` to match regexp "Marker names: chr \\[1:4\\] \"mk1\" \"mk,2\" \"mk'3\" \"mk4\"".
Actual output:
✖ │ # Genotypes
│
│ Format = default
│
│ Number of accessions = 5
│ Ids:chr [1:5] "Alice" "Dave" "Bob" "Bob'" "Carol"
│ Names:chr [1:5] "Alice" "Dave" "Bob" "Bob" "Carol"
│
│ Number of markers = 4
│ Marker names:chr [1:4] "mk1" "mk,2" "mk'3" "mk4"
│ Number of alleles per marker = 2-4
│
│ Read from file: "/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/corehunter.Rcheck/tests/testthat/data/genotypes-small.csv"
── Failure ('testData.R:493:3'): print ─────────────────────────────────────────
Expected output from `print(data)` to match regexp "Ids: chr \\[1:5\\] \"Alice\" \"Dave\" \"Bob\" \"Bob'\" \"Carol\"".
Actual output:
✖ │ # Genotypes
│
│ Format = biparental
│
│ Number of accessions = 5
│ Ids:chr [1:5] "Alice" "Dave" "Bob" "Bob'" "Carol"
│ Names:chr [1:5] "Alice" "Dave" "Bob" "Bob" "Carol"
│
│ Number of markers = 4
│ Marker names:chr [1:4] "mk1" "mk,2" "mk'3" "mk4"
│ Number of alleles per marker = 2
│
│ Read from file: "/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/corehunter.Rcheck/tests/testthat/data/genotypes-bi-small.csv"
── Failure ('testData.R:494:3'): print ─────────────────────────────────────────
Expected output from `print(data)` to match regexp "Names: chr \\[1:5\\] \"Alice\" \"Dave\" \"Bob\" \"Bob\" \"Carol\"".
Actual output:
✖ │ # Genotypes
│
│ Format = biparental
│
│ Number of accessions = 5
│ Ids:chr [1:5] "Alice" "Dave" "Bob" "Bob'" "Carol"
│ Names:chr [1:5] "Alice" "Dave" "Bob" "Bob" "Carol"
│
│ Number of markers = 4
│ Marker names:chr [1:4] "mk1" "mk,2" "mk'3" "mk4"
│ Number of alleles per marker = 2
│
│ Read from file: "/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/corehunter.Rcheck/tests/testthat/data/genotypes-bi-small.csv"
── Failure ('testData.R:496:3'): print ─────────────────────────────────────────
Expected output from `print(data)` to match regexp "Marker names: chr \\[1:4\\] \"mk1\" \"mk,2\" \"mk'3\" \"mk4\"".
Actual output:
✖ │ # Genotypes
│
│ Format = biparental
│
│ Number of accessions = 5
│ Ids:chr [1:5] "Alice" "Dave" "Bob" "Bob'" "Carol"
│ Names:chr [1:5] "Alice" "Dave" "Bob" "Bob" "Carol"
│
│ Number of markers = 4
│ Marker names:chr [1:4] "mk1" "mk,2" "mk'3" "mk4"
│ Number of alleles per marker = 2
│
│ Read from file: "/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/corehunter.Rcheck/tests/testthat/data/genotypes-bi-small.csv"
── Failure ('testData.R:504:3'): print ─────────────────────────────────────────
Expected output from `print(data)` to match regexp "Ids: chr \\[1:5\\] \"Alice\" \"Dave\" \"Bob\" \"Bob'\" \"Carol\"".
Actual output:
✖ │ # Genotypes
│
│ Format = frequency
│
│ Number of accessions = 5
│ Ids:chr [1:5] "Alice" "Dave" "Bob" "Bob'" "Carol"
│ Names:chr [1:5] "Alice" "Dave" "Bob" "Bob" "Carol"
│
│ Number of markers = 4
│ Marker names:chr [1:4] "mk1" "mk,2" "mk'3" "mk4"
│ Number of alleles per marker = 2-4
│
│ Read from file: "/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/corehunter.Rcheck/tests/testthat/data/genotypes-freq-small.csv"
── Failure ('testData.R:505:3'): print ─────────────────────────────────────────
Expected output from `print(data)` to match regexp "Names: chr \\[1:5\\] \"Alice\" \"Dave\" \"Bob\" \"Bob\" \"Carol\"".
Actual output:
✖ │ # Genotypes
│
│ Format = frequency
│
│ Number of accessions = 5
│ Ids:chr [1:5] "Alice" "Dave" "Bob" "Bob'" "Carol"
│ Names:chr [1:5] "Alice" "Dave" "Bob" "Bob" "Carol"
│
│ Number of markers = 4
│ Marker names:chr [1:4] "mk1" "mk,2" "mk'3" "mk4"
│ Number of alleles per marker = 2-4
│
│ Read from file: "/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/corehunter.Rcheck/tests/testthat/data/genotypes-freq-small.csv"
── Failure ('testData.R:507:3'): print ─────────────────────────────────────────
Expected output from `print(data)` to match regexp "Marker names: chr \\[1:4\\] \"mk1\" \"mk,2\" \"mk'3\" \"mk4\"".
Actual output:
✖ │ # Genotypes
│
│ Format = frequency
│
│ Number of accessions = 5
│ Ids:chr [1:5] "Alice" "Dave" "Bob" "Bob'" "Carol"
│ Names:chr [1:5] "Alice" "Dave" "Bob" "Bob" "Carol"
│
│ Number of markers = 4
│ Marker names:chr [1:4] "mk1" "mk,2" "mk'3" "mk4"
│ Number of alleles per marker = 2-4
│
│ Read from file: "/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/corehunter.Rcheck/tests/testthat/data/genotypes-freq-small.csv"
[ FAIL 11 | WARN 17 | SKIP 1 | PASS 2411 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 3.2.3
Check: tests
Result: ERROR
Running ‘test.R’ [75s/73s]
Running the tests in ‘tests/test.R’ failed.
Complete output:
> library(testthat)
> library(mockr)
Attaching package: 'mockr'
The following objects are masked from 'package:testthat':
local_mock, with_mock
> library(corehunter)
Loading required package: rJava
>
> test_check("corehunter")
Saving _problems/testData-117.R
Saving _problems/testData-118.R
Saving _problems/testData-482.R
Saving _problems/testData-483.R
Saving _problems/testData-485.R
Saving _problems/testData-493.R
Saving _problems/testData-494.R
Saving _problems/testData-496.R
Saving _problems/testData-504.R
Saving _problems/testData-505.R
Saving _problems/testData-507.R
[ FAIL 11 | WARN 17 | SKIP 1 | PASS 2411 ]
══ Skipped tests (1) ═══════════════════════════════════════════════════════════
• empty test (1):
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('testData.R:117:3'): print ─────────────────────────────────────────
Expected output from `print(data)` to match regexp "Ids: chr \\[1:5\\] \"Alice\" \"Dave\" \"Bob\" \"Bob'\" \"Carol\"".
Actual output:
✖ │ # Precomputed distance matrix
│
│ Number of accessions = 5
│ Ids:chr [1:5] "Alice" "Dave" "Bob" "Bob'" "Carol"
│ Names:chr [1:5] "Alice" "Dave" "Bob" "Bob" "Carol"
│
│ Read from file: "/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/corehunter.Rcheck/tests/testthat/data/distances-small.txt"
── Failure ('testData.R:118:3'): print ─────────────────────────────────────────
Expected output from `print(data)` to match regexp "Names: chr \\[1:5\\] \"Alice\" \"Dave\" \"Bob\" \"Bob\" \"Carol\"".
Actual output:
✖ │ # Precomputed distance matrix
│
│ Number of accessions = 5
│ Ids:chr [1:5] "Alice" "Dave" "Bob" "Bob'" "Carol"
│ Names:chr [1:5] "Alice" "Dave" "Bob" "Bob" "Carol"
│
│ Read from file: "/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/corehunter.Rcheck/tests/testthat/data/distances-small.txt"
── Failure ('testData.R:482:3'): print ─────────────────────────────────────────
Expected output from `print(data)` to match regexp "Ids: chr \\[1:5\\] \"Alice\" \"Dave\" \"Bob\" \"Bob'\" \"Carol\"".
Actual output:
✖ │ # Genotypes
│
│ Format = default
│
│ Number of accessions = 5
│ Ids:chr [1:5] "Alice" "Dave" "Bob" "Bob'" "Carol"
│ Names:chr [1:5] "Alice" "Dave" "Bob" "Bob" "Carol"
│
│ Number of markers = 4
│ Marker names:chr [1:4] "mk1" "mk,2" "mk'3" "mk4"
│ Number of alleles per marker = 2-4
│
│ Read from file: "/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/corehunter.Rcheck/tests/testthat/data/genotypes-small.csv"
── Failure ('testData.R:483:3'): print ─────────────────────────────────────────
Expected output from `print(data)` to match regexp "Names: chr \\[1:5\\] \"Alice\" \"Dave\" \"Bob\" \"Bob\" \"Carol\"".
Actual output:
✖ │ # Genotypes
│
│ Format = default
│
│ Number of accessions = 5
│ Ids:chr [1:5] "Alice" "Dave" "Bob" "Bob'" "Carol"
│ Names:chr [1:5] "Alice" "Dave" "Bob" "Bob" "Carol"
│
│ Number of markers = 4
│ Marker names:chr [1:4] "mk1" "mk,2" "mk'3" "mk4"
│ Number of alleles per marker = 2-4
│
│ Read from file: "/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/corehunter.Rcheck/tests/testthat/data/genotypes-small.csv"
── Failure ('testData.R:485:3'): print ─────────────────────────────────────────
Expected output from `print(data)` to match regexp "Marker names: chr \\[1:4\\] \"mk1\" \"mk,2\" \"mk'3\" \"mk4\"".
Actual output:
✖ │ # Genotypes
│
│ Format = default
│
│ Number of accessions = 5
│ Ids:chr [1:5] "Alice" "Dave" "Bob" "Bob'" "Carol"
│ Names:chr [1:5] "Alice" "Dave" "Bob" "Bob" "Carol"
│
│ Number of markers = 4
│ Marker names:chr [1:4] "mk1" "mk,2" "mk'3" "mk4"
│ Number of alleles per marker = 2-4
│
│ Read from file: "/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/corehunter.Rcheck/tests/testthat/data/genotypes-small.csv"
── Failure ('testData.R:493:3'): print ─────────────────────────────────────────
Expected output from `print(data)` to match regexp "Ids: chr \\[1:5\\] \"Alice\" \"Dave\" \"Bob\" \"Bob'\" \"Carol\"".
Actual output:
✖ │ # Genotypes
│
│ Format = biparental
│
│ Number of accessions = 5
│ Ids:chr [1:5] "Alice" "Dave" "Bob" "Bob'" "Carol"
│ Names:chr [1:5] "Alice" "Dave" "Bob" "Bob" "Carol"
│
│ Number of markers = 4
│ Marker names:chr [1:4] "mk1" "mk,2" "mk'3" "mk4"
│ Number of alleles per marker = 2
│
│ Read from file: "/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/corehunter.Rcheck/tests/testthat/data/genotypes-bi-small.csv"
── Failure ('testData.R:494:3'): print ─────────────────────────────────────────
Expected output from `print(data)` to match regexp "Names: chr \\[1:5\\] \"Alice\" \"Dave\" \"Bob\" \"Bob\" \"Carol\"".
Actual output:
✖ │ # Genotypes
│
│ Format = biparental
│
│ Number of accessions = 5
│ Ids:chr [1:5] "Alice" "Dave" "Bob" "Bob'" "Carol"
│ Names:chr [1:5] "Alice" "Dave" "Bob" "Bob" "Carol"
│
│ Number of markers = 4
│ Marker names:chr [1:4] "mk1" "mk,2" "mk'3" "mk4"
│ Number of alleles per marker = 2
│
│ Read from file: "/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/corehunter.Rcheck/tests/testthat/data/genotypes-bi-small.csv"
── Failure ('testData.R:496:3'): print ─────────────────────────────────────────
Expected output from `print(data)` to match regexp "Marker names: chr \\[1:4\\] \"mk1\" \"mk,2\" \"mk'3\" \"mk4\"".
Actual output:
✖ │ # Genotypes
│
│ Format = biparental
│
│ Number of accessions = 5
│ Ids:chr [1:5] "Alice" "Dave" "Bob" "Bob'" "Carol"
│ Names:chr [1:5] "Alice" "Dave" "Bob" "Bob" "Carol"
│
│ Number of markers = 4
│ Marker names:chr [1:4] "mk1" "mk,2" "mk'3" "mk4"
│ Number of alleles per marker = 2
│
│ Read from file: "/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/corehunter.Rcheck/tests/testthat/data/genotypes-bi-small.csv"
── Failure ('testData.R:504:3'): print ─────────────────────────────────────────
Expected output from `print(data)` to match regexp "Ids: chr \\[1:5\\] \"Alice\" \"Dave\" \"Bob\" \"Bob'\" \"Carol\"".
Actual output:
✖ │ # Genotypes
│
│ Format = frequency
│
│ Number of accessions = 5
│ Ids:chr [1:5] "Alice" "Dave" "Bob" "Bob'" "Carol"
│ Names:chr [1:5] "Alice" "Dave" "Bob" "Bob" "Carol"
│
│ Number of markers = 4
│ Marker names:chr [1:4] "mk1" "mk,2" "mk'3" "mk4"
│ Number of alleles per marker = 2-4
│
│ Read from file: "/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/corehunter.Rcheck/tests/testthat/data/genotypes-freq-small.csv"
── Failure ('testData.R:505:3'): print ─────────────────────────────────────────
Expected output from `print(data)` to match regexp "Names: chr \\[1:5\\] \"Alice\" \"Dave\" \"Bob\" \"Bob\" \"Carol\"".
Actual output:
✖ │ # Genotypes
│
│ Format = frequency
│
│ Number of accessions = 5
│ Ids:chr [1:5] "Alice" "Dave" "Bob" "Bob'" "Carol"
│ Names:chr [1:5] "Alice" "Dave" "Bob" "Bob" "Carol"
│
│ Number of markers = 4
│ Marker names:chr [1:4] "mk1" "mk,2" "mk'3" "mk4"
│ Number of alleles per marker = 2-4
│
│ Read from file: "/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/corehunter.Rcheck/tests/testthat/data/genotypes-freq-small.csv"
── Failure ('testData.R:507:3'): print ─────────────────────────────────────────
Expected output from `print(data)` to match regexp "Marker names: chr \\[1:4\\] \"mk1\" \"mk,2\" \"mk'3\" \"mk4\"".
Actual output:
✖ │ # Genotypes
│
│ Format = frequency
│
│ Number of accessions = 5
│ Ids:chr [1:5] "Alice" "Dave" "Bob" "Bob'" "Carol"
│ Names:chr [1:5] "Alice" "Dave" "Bob" "Bob" "Carol"
│
│ Number of markers = 4
│ Marker names:chr [1:4] "mk1" "mk,2" "mk'3" "mk4"
│ Number of alleles per marker = 2-4
│
│ Read from file: "/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/corehunter.Rcheck/tests/testthat/data/genotypes-freq-small.csv"
[ FAIL 11 | WARN 17 | SKIP 1 | PASS 2411 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 3.2.3
Check: tests
Result: ERROR
Running ‘test.R’ [73s/61s]
Running the tests in ‘tests/test.R’ failed.
Complete output:
> library(testthat)
> library(mockr)
Attaching package: 'mockr'
The following objects are masked from 'package:testthat':
local_mock, with_mock
> library(corehunter)
Loading required package: rJava
>
> test_check("corehunter")
Saving _problems/testData-117.R
Saving _problems/testData-118.R
Saving _problems/testData-482.R
Saving _problems/testData-483.R
Saving _problems/testData-485.R
Saving _problems/testData-493.R
Saving _problems/testData-494.R
Saving _problems/testData-496.R
Saving _problems/testData-504.R
Saving _problems/testData-505.R
Saving _problems/testData-507.R
[ FAIL 11 | WARN 17 | SKIP 1 | PASS 2411 ]
══ Skipped tests (1) ═══════════════════════════════════════════════════════════
• empty test (1):
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('testData.R:117:3'): print ─────────────────────────────────────────
Expected output from `print(data)` to match regexp "Ids: chr \\[1:5\\] \"Alice\" \"Dave\" \"Bob\" \"Bob'\" \"Carol\"".
Actual output:
✖ │ # Precomputed distance matrix
│
│ Number of accessions = 5
│ Ids:chr [1:5] "Alice" "Dave" "Bob" "Bob'" "Carol"
│ Names:chr [1:5] "Alice" "Dave" "Bob" "Bob" "Carol"
│
│ Read from file: "/data/localhost/ripley/R/packages/tests-clang/corehunter.Rcheck/tests/testthat/data/distances-small.txt"
── Failure ('testData.R:118:3'): print ─────────────────────────────────────────
Expected output from `print(data)` to match regexp "Names: chr \\[1:5\\] \"Alice\" \"Dave\" \"Bob\" \"Bob\" \"Carol\"".
Actual output:
✖ │ # Precomputed distance matrix
│
│ Number of accessions = 5
│ Ids:chr [1:5] "Alice" "Dave" "Bob" "Bob'" "Carol"
│ Names:chr [1:5] "Alice" "Dave" "Bob" "Bob" "Carol"
│
│ Read from file: "/data/localhost/ripley/R/packages/tests-clang/corehunter.Rcheck/tests/testthat/data/distances-small.txt"
── Failure ('testData.R:482:3'): print ─────────────────────────────────────────
Expected output from `print(data)` to match regexp "Ids: chr \\[1:5\\] \"Alice\" \"Dave\" \"Bob\" \"Bob'\" \"Carol\"".
Actual output:
✖ │ # Genotypes
│
│ Format = default
│
│ Number of accessions = 5
│ Ids:chr [1:5] "Alice" "Dave" "Bob" "Bob'" "Carol"
│ Names:chr [1:5] "Alice" "Dave" "Bob" "Bob" "Carol"
│
│ Number of markers = 4
│ Marker names:chr [1:4] "mk1" "mk,2" "mk'3" "mk4"
│ Number of alleles per marker = 2-4
│
│ Read from file: "/data/localhost/ripley/R/packages/tests-clang/corehunter.Rcheck/tests/testthat/data/genotypes-small.csv"
── Failure ('testData.R:483:3'): print ─────────────────────────────────────────
Expected output from `print(data)` to match regexp "Names: chr \\[1:5\\] \"Alice\" \"Dave\" \"Bob\" \"Bob\" \"Carol\"".
Actual output:
✖ │ # Genotypes
│
│ Format = default
│
│ Number of accessions = 5
│ Ids:chr [1:5] "Alice" "Dave" "Bob" "Bob'" "Carol"
│ Names:chr [1:5] "Alice" "Dave" "Bob" "Bob" "Carol"
│
│ Number of markers = 4
│ Marker names:chr [1:4] "mk1" "mk,2" "mk'3" "mk4"
│ Number of alleles per marker = 2-4
│
│ Read from file: "/data/localhost/ripley/R/packages/tests-clang/corehunter.Rcheck/tests/testthat/data/genotypes-small.csv"
── Failure ('testData.R:485:3'): print ─────────────────────────────────────────
Expected output from `print(data)` to match regexp "Marker names: chr \\[1:4\\] \"mk1\" \"mk,2\" \"mk'3\" \"mk4\"".
Actual output:
✖ │ # Genotypes
│
│ Format = default
│
│ Number of accessions = 5
│ Ids:chr [1:5] "Alice" "Dave" "Bob" "Bob'" "Carol"
│ Names:chr [1:5] "Alice" "Dave" "Bob" "Bob" "Carol"
│
│ Number of markers = 4
│ Marker names:chr [1:4] "mk1" "mk,2" "mk'3" "mk4"
│ Number of alleles per marker = 2-4
│
│ Read from file: "/data/localhost/ripley/R/packages/tests-clang/corehunter.Rcheck/tests/testthat/data/genotypes-small.csv"
── Failure ('testData.R:493:3'): print ─────────────────────────────────────────
Expected output from `print(data)` to match regexp "Ids: chr \\[1:5\\] \"Alice\" \"Dave\" \"Bob\" \"Bob'\" \"Carol\"".
Actual output:
✖ │ # Genotypes
│
│ Format = biparental
│
│ Number of accessions = 5
│ Ids:chr [1:5] "Alice" "Dave" "Bob" "Bob'" "Carol"
│ Names:chr [1:5] "Alice" "Dave" "Bob" "Bob" "Carol"
│
│ Number of markers = 4
│ Marker names:chr [1:4] "mk1" "mk,2" "mk'3" "mk4"
│ Number of alleles per marker = 2
│
│ Read from file: "/data/localhost/ripley/R/packages/tests-clang/corehunter.Rcheck/tests/testthat/data/genotypes-bi-small.csv"
── Failure ('testData.R:494:3'): print ─────────────────────────────────────────
Expected output from `print(data)` to match regexp "Names: chr \\[1:5\\] \"Alice\" \"Dave\" \"Bob\" \"Bob\" \"Carol\"".
Actual output:
✖ │ # Genotypes
│
│ Format = biparental
│
│ Number of accessions = 5
│ Ids:chr [1:5] "Alice" "Dave" "Bob" "Bob'" "Carol"
│ Names:chr [1:5] "Alice" "Dave" "Bob" "Bob" "Carol"
│
│ Number of markers = 4
│ Marker names:chr [1:4] "mk1" "mk,2" "mk'3" "mk4"
│ Number of alleles per marker = 2
│
│ Read from file: "/data/localhost/ripley/R/packages/tests-clang/corehunter.Rcheck/tests/testthat/data/genotypes-bi-small.csv"
── Failure ('testData.R:496:3'): print ─────────────────────────────────────────
Expected output from `print(data)` to match regexp "Marker names: chr \\[1:4\\] \"mk1\" \"mk,2\" \"mk'3\" \"mk4\"".
Actual output:
✖ │ # Genotypes
│
│ Format = biparental
│
│ Number of accessions = 5
│ Ids:chr [1:5] "Alice" "Dave" "Bob" "Bob'" "Carol"
│ Names:chr [1:5] "Alice" "Dave" "Bob" "Bob" "Carol"
│
│ Number of markers = 4
│ Marker names:chr [1:4] "mk1" "mk,2" "mk'3" "mk4"
│ Number of alleles per marker = 2
│
│ Read from file: "/data/localhost/ripley/R/packages/tests-clang/corehunter.Rcheck/tests/testthat/data/genotypes-bi-small.csv"
── Failure ('testData.R:504:3'): print ─────────────────────────────────────────
Expected output from `print(data)` to match regexp "Ids: chr \\[1:5\\] \"Alice\" \"Dave\" \"Bob\" \"Bob'\" \"Carol\"".
Actual output:
✖ │ # Genotypes
│
│ Format = frequency
│
│ Number of accessions = 5
│ Ids:chr [1:5] "Alice" "Dave" "Bob" "Bob'" "Carol"
│ Names:chr [1:5] "Alice" "Dave" "Bob" "Bob" "Carol"
│
│ Number of markers = 4
│ Marker names:chr [1:4] "mk1" "mk,2" "mk'3" "mk4"
│ Number of alleles per marker = 2-4
│
│ Read from file: "/data/localhost/ripley/R/packages/tests-clang/corehunter.Rcheck/tests/testthat/data/genotypes-freq-small.csv"
── Failure ('testData.R:505:3'): print ─────────────────────────────────────────
Expected output from `print(data)` to match regexp "Names: chr \\[1:5\\] \"Alice\" \"Dave\" \"Bob\" \"Bob\" \"Carol\"".
Actual output:
✖ │ # Genotypes
│
│ Format = frequency
│
│ Number of accessions = 5
│ Ids:chr [1:5] "Alice" "Dave" "Bob" "Bob'" "Carol"
│ Names:chr [1:5] "Alice" "Dave" "Bob" "Bob" "Carol"
│
│ Number of markers = 4
│ Marker names:chr [1:4] "mk1" "mk,2" "mk'3" "mk4"
│ Number of alleles per marker = 2-4
│
│ Read from file: "/data/localhost/ripley/R/packages/tests-clang/corehunter.Rcheck/tests/testthat/data/genotypes-freq-small.csv"
── Failure ('testData.R:507:3'): print ─────────────────────────────────────────
Expected output from `print(data)` to match regexp "Marker names: chr \\[1:4\\] \"mk1\" \"mk,2\" \"mk'3\" \"mk4\"".
Actual output:
✖ │ # Genotypes
│
│ Format = frequency
│
│ Number of accessions = 5
│ Ids:chr [1:5] "Alice" "Dave" "Bob" "Bob'" "Carol"
│ Names:chr [1:5] "Alice" "Dave" "Bob" "Bob" "Carol"
│
│ Number of markers = 4
│ Marker names:chr [1:4] "mk1" "mk,2" "mk'3" "mk4"
│ Number of alleles per marker = 2-4
│
│ Read from file: "/data/localhost/ripley/R/packages/tests-clang/corehunter.Rcheck/tests/testthat/data/genotypes-freq-small.csv"
[ FAIL 11 | WARN 17 | SKIP 1 | PASS 2411 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 3.2.3
Check: tests
Result: ERROR
Running ‘test.R’ [74s/68s]
Running the tests in ‘tests/test.R’ failed.
Complete output:
> library(testthat)
> library(mockr)
Attaching package: 'mockr'
The following objects are masked from 'package:testthat':
local_mock, with_mock
> library(corehunter)
Loading required package: rJava
>
> test_check("corehunter")
Saving _problems/testData-117.R
Saving _problems/testData-118.R
Saving _problems/testData-482.R
Saving _problems/testData-483.R
Saving _problems/testData-485.R
Saving _problems/testData-493.R
Saving _problems/testData-494.R
Saving _problems/testData-496.R
Saving _problems/testData-504.R
Saving _problems/testData-505.R
Saving _problems/testData-507.R
[ FAIL 11 | WARN 17 | SKIP 1 | PASS 2411 ]
══ Skipped tests (1) ═══════════════════════════════════════════════════════════
• empty test (1):
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('testData.R:117:3'): print ─────────────────────────────────────────
Expected output from `print(data)` to match regexp "Ids: chr \\[1:5\\] \"Alice\" \"Dave\" \"Bob\" \"Bob'\" \"Carol\"".
Actual output:
✖ │ # Precomputed distance matrix
│
│ Number of accessions = 5
│ Ids:chr [1:5] "Alice" "Dave" "Bob" "Bob'" "Carol"
│ Names:chr [1:5] "Alice" "Dave" "Bob" "Bob" "Carol"
│
│ Read from file: "/data/localhost/ripley/R/packages/tests-devel/corehunter.Rcheck/tests/testthat/data/distances-small.txt"
── Failure ('testData.R:118:3'): print ─────────────────────────────────────────
Expected output from `print(data)` to match regexp "Names: chr \\[1:5\\] \"Alice\" \"Dave\" \"Bob\" \"Bob\" \"Carol\"".
Actual output:
✖ │ # Precomputed distance matrix
│
│ Number of accessions = 5
│ Ids:chr [1:5] "Alice" "Dave" "Bob" "Bob'" "Carol"
│ Names:chr [1:5] "Alice" "Dave" "Bob" "Bob" "Carol"
│
│ Read from file: "/data/localhost/ripley/R/packages/tests-devel/corehunter.Rcheck/tests/testthat/data/distances-small.txt"
── Failure ('testData.R:482:3'): print ─────────────────────────────────────────
Expected output from `print(data)` to match regexp "Ids: chr \\[1:5\\] \"Alice\" \"Dave\" \"Bob\" \"Bob'\" \"Carol\"".
Actual output:
✖ │ # Genotypes
│
│ Format = default
│
│ Number of accessions = 5
│ Ids:chr [1:5] "Alice" "Dave" "Bob" "Bob'" "Carol"
│ Names:chr [1:5] "Alice" "Dave" "Bob" "Bob" "Carol"
│
│ Number of markers = 4
│ Marker names:chr [1:4] "mk1" "mk,2" "mk'3" "mk4"
│ Number of alleles per marker = 2-4
│
│ Read from file: "/data/localhost/ripley/R/packages/tests-devel/corehunter.Rcheck/tests/testthat/data/genotypes-small.csv"
── Failure ('testData.R:483:3'): print ─────────────────────────────────────────
Expected output from `print(data)` to match regexp "Names: chr \\[1:5\\] \"Alice\" \"Dave\" \"Bob\" \"Bob\" \"Carol\"".
Actual output:
✖ │ # Genotypes
│
│ Format = default
│
│ Number of accessions = 5
│ Ids:chr [1:5] "Alice" "Dave" "Bob" "Bob'" "Carol"
│ Names:chr [1:5] "Alice" "Dave" "Bob" "Bob" "Carol"
│
│ Number of markers = 4
│ Marker names:chr [1:4] "mk1" "mk,2" "mk'3" "mk4"
│ Number of alleles per marker = 2-4
│
│ Read from file: "/data/localhost/ripley/R/packages/tests-devel/corehunter.Rcheck/tests/testthat/data/genotypes-small.csv"
── Failure ('testData.R:485:3'): print ─────────────────────────────────────────
Expected output from `print(data)` to match regexp "Marker names: chr \\[1:4\\] \"mk1\" \"mk,2\" \"mk'3\" \"mk4\"".
Actual output:
✖ │ # Genotypes
│
│ Format = default
│
│ Number of accessions = 5
│ Ids:chr [1:5] "Alice" "Dave" "Bob" "Bob'" "Carol"
│ Names:chr [1:5] "Alice" "Dave" "Bob" "Bob" "Carol"
│
│ Number of markers = 4
│ Marker names:chr [1:4] "mk1" "mk,2" "mk'3" "mk4"
│ Number of alleles per marker = 2-4
│
│ Read from file: "/data/localhost/ripley/R/packages/tests-devel/corehunter.Rcheck/tests/testthat/data/genotypes-small.csv"
── Failure ('testData.R:493:3'): print ─────────────────────────────────────────
Expected output from `print(data)` to match regexp "Ids: chr \\[1:5\\] \"Alice\" \"Dave\" \"Bob\" \"Bob'\" \"Carol\"".
Actual output:
✖ │ # Genotypes
│
│ Format = biparental
│
│ Number of accessions = 5
│ Ids:chr [1:5] "Alice" "Dave" "Bob" "Bob'" "Carol"
│ Names:chr [1:5] "Alice" "Dave" "Bob" "Bob" "Carol"
│
│ Number of markers = 4
│ Marker names:chr [1:4] "mk1" "mk,2" "mk'3" "mk4"
│ Number of alleles per marker = 2
│
│ Read from file: "/data/localhost/ripley/R/packages/tests-devel/corehunter.Rcheck/tests/testthat/data/genotypes-bi-small.csv"
── Failure ('testData.R:494:3'): print ─────────────────────────────────────────
Expected output from `print(data)` to match regexp "Names: chr \\[1:5\\] \"Alice\" \"Dave\" \"Bob\" \"Bob\" \"Carol\"".
Actual output:
✖ │ # Genotypes
│
│ Format = biparental
│
│ Number of accessions = 5
│ Ids:chr [1:5] "Alice" "Dave" "Bob" "Bob'" "Carol"
│ Names:chr [1:5] "Alice" "Dave" "Bob" "Bob" "Carol"
│
│ Number of markers = 4
│ Marker names:chr [1:4] "mk1" "mk,2" "mk'3" "mk4"
│ Number of alleles per marker = 2
│
│ Read from file: "/data/localhost/ripley/R/packages/tests-devel/corehunter.Rcheck/tests/testthat/data/genotypes-bi-small.csv"
── Failure ('testData.R:496:3'): print ─────────────────────────────────────────
Expected output from `print(data)` to match regexp "Marker names: chr \\[1:4\\] \"mk1\" \"mk,2\" \"mk'3\" \"mk4\"".
Actual output:
✖ │ # Genotypes
│
│ Format = biparental
│
│ Number of accessions = 5
│ Ids:chr [1:5] "Alice" "Dave" "Bob" "Bob'" "Carol"
│ Names:chr [1:5] "Alice" "Dave" "Bob" "Bob" "Carol"
│
│ Number of markers = 4
│ Marker names:chr [1:4] "mk1" "mk,2" "mk'3" "mk4"
│ Number of alleles per marker = 2
│
│ Read from file: "/data/localhost/ripley/R/packages/tests-devel/corehunter.Rcheck/tests/testthat/data/genotypes-bi-small.csv"
── Failure ('testData.R:504:3'): print ─────────────────────────────────────────
Expected output from `print(data)` to match regexp "Ids: chr \\[1:5\\] \"Alice\" \"Dave\" \"Bob\" \"Bob'\" \"Carol\"".
Actual output:
✖ │ # Genotypes
│
│ Format = frequency
│
│ Number of accessions = 5
│ Ids:chr [1:5] "Alice" "Dave" "Bob" "Bob'" "Carol"
│ Names:chr [1:5] "Alice" "Dave" "Bob" "Bob" "Carol"
│
│ Number of markers = 4
│ Marker names:chr [1:4] "mk1" "mk,2" "mk'3" "mk4"
│ Number of alleles per marker = 2-4
│
│ Read from file: "/data/localhost/ripley/R/packages/tests-devel/corehunter.Rcheck/tests/testthat/data/genotypes-freq-small.csv"
── Failure ('testData.R:505:3'): print ─────────────────────────────────────────
Expected output from `print(data)` to match regexp "Names: chr \\[1:5\\] \"Alice\" \"Dave\" \"Bob\" \"Bob\" \"Carol\"".
Actual output:
✖ │ # Genotypes
│
│ Format = frequency
│
│ Number of accessions = 5
│ Ids:chr [1:5] "Alice" "Dave" "Bob" "Bob'" "Carol"
│ Names:chr [1:5] "Alice" "Dave" "Bob" "Bob" "Carol"
│
│ Number of markers = 4
│ Marker names:chr [1:4] "mk1" "mk,2" "mk'3" "mk4"
│ Number of alleles per marker = 2-4
│
│ Read from file: "/data/localhost/ripley/R/packages/tests-devel/corehunter.Rcheck/tests/testthat/data/genotypes-freq-small.csv"
── Failure ('testData.R:507:3'): print ─────────────────────────────────────────
Expected output from `print(data)` to match regexp "Marker names: chr \\[1:4\\] \"mk1\" \"mk,2\" \"mk'3\" \"mk4\"".
Actual output:
✖ │ # Genotypes
│
│ Format = frequency
│
│ Number of accessions = 5
│ Ids:chr [1:5] "Alice" "Dave" "Bob" "Bob'" "Carol"
│ Names:chr [1:5] "Alice" "Dave" "Bob" "Bob" "Carol"
│
│ Number of markers = 4
│ Marker names:chr [1:4] "mk1" "mk,2" "mk'3" "mk4"
│ Number of alleles per marker = 2-4
│
│ Read from file: "/data/localhost/ripley/R/packages/tests-devel/corehunter.Rcheck/tests/testthat/data/genotypes-freq-small.csv"
[ FAIL 11 | WARN 17 | SKIP 1 | PASS 2411 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc
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