Last updated on 2025-10-10 11:51:31 CEST.
| Package | ERROR | NOTE | OK |
|---|---|---|---|
| datarium | 13 | ||
| factoextra | 13 | ||
| fastqcr | 13 | ||
| ggcorrplot | 2 | 11 | |
| ggpubr | 5 | 8 | |
| rstatix | 5 | 8 | |
| survminer | 3 | 10 |
Current CRAN status: OK: 13
Current CRAN status: NOTE: 13
Version: 1.0.7
Check: Rd files
Result: NOTE
checkRd: (-1) fviz_nbclust.Rd:75: Lost braces; missing escapes or markup?
75 | (2001) proposed: "the smallest k such that gap(k) >= gap(k+1) - s_{k+1}".
| ^
checkRd: (-1) fviz_nbclust.Rd:77: Lost braces; missing escapes or markup?
77 | SE.factor*s_{k+1}" where SE.factor is a numeric value which can be 1
| ^
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Current CRAN status: OK: 13
Current CRAN status: NOTE: 2, OK: 11
Version: 0.1.4.1
Check: DESCRIPTION meta-information
Result: NOTE
Author field differs from that derived from Authors@R
Author: ‘Alboukadel Kassambara [aut, cre], Indrajeet Patil [ctb] (<https://orcid.org/0000-0003-1995-6531>, @patilindrajeets)’
Authors@R: ‘Alboukadel Kassambara [aut, cre], Indrajeet Patil [ctb] (ORCID: <https://orcid.org/0000-0003-1995-6531>, Twitter: @patilindrajeets)’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Current CRAN status: ERROR: 5, OK: 8
Version: 0.6.1
Check: tests
Result: ERROR
Running ‘testthat.R’ [36s/48s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(ggpubr)
Loading required package: ggplot2
>
> test_check("ggpubr")
[ FAIL 4 | WARN 1 | SKIP 0 | PASS 214 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-compare_means.R:38:3'): compare_means works for Two-samples paired test ──
`results` not equal to `expected`.
Component "p.format": 1 string mismatch
── Failure ('test-compare_means.R:52:3'): compare_means works for pairwise comparisons ──
`results` not equal to `expected`.
Component "p.format": 3 string mismatches
Component "p.signif": 1 string mismatch
── Failure ('test-compare_means.R:64:3'): compare_means works for comparison against reference groups ──
`results` not equal to `expected`.
Component "p.format": 2 string mismatches
── Failure ('test-stat_compare_means.R:101:3'): stat_compare_means works for paired samples comparison ──
`label_coords_expected` not equal to `label_coords_observed`.
Component "label": 1 string mismatch
[ FAIL 4 | WARN 1 | SKIP 0 | PASS 214 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 0.6.1
Check: tests
Result: ERROR
Running ‘testthat.R’ [24s/30s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(ggpubr)
Loading required package: ggplot2
>
> test_check("ggpubr")
[ FAIL 4 | WARN 1 | SKIP 0 | PASS 214 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-compare_means.R:38:3'): compare_means works for Two-samples paired test ──
`results` not equal to `expected`.
Component "p.format": 1 string mismatch
── Failure ('test-compare_means.R:52:3'): compare_means works for pairwise comparisons ──
`results` not equal to `expected`.
Component "p.format": 3 string mismatches
Component "p.signif": 1 string mismatch
── Failure ('test-compare_means.R:64:3'): compare_means works for comparison against reference groups ──
`results` not equal to `expected`.
Component "p.format": 2 string mismatches
── Failure ('test-stat_compare_means.R:101:3'): stat_compare_means works for paired samples comparison ──
`label_coords_expected` not equal to `label_coords_observed`.
Component "label": 1 string mismatch
[ FAIL 4 | WARN 1 | SKIP 0 | PASS 214 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.6.1
Check: tests
Result: ERROR
Running ‘testthat.R’ [59s/98s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(ggpubr)
Loading required package: ggplot2
>
> test_check("ggpubr")
[ FAIL 4 | WARN 1 | SKIP 0 | PASS 214 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-compare_means.R:38:3'): compare_means works for Two-samples paired test ──
`results` not equal to `expected`.
Component "p.format": 1 string mismatch
── Failure ('test-compare_means.R:52:3'): compare_means works for pairwise comparisons ──
`results` not equal to `expected`.
Component "p.format": 3 string mismatches
Component "p.signif": 1 string mismatch
── Failure ('test-compare_means.R:64:3'): compare_means works for comparison against reference groups ──
`results` not equal to `expected`.
Component "p.format": 2 string mismatches
── Failure ('test-stat_compare_means.R:101:3'): stat_compare_means works for paired samples comparison ──
`label_coords_expected` not equal to `label_coords_observed`.
Component "label": 1 string mismatch
[ FAIL 4 | WARN 1 | SKIP 0 | PASS 214 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 0.6.1
Check: tests
Result: ERROR
Running ‘testthat.R’ [50s/63s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(ggpubr)
Loading required package: ggplot2
>
> test_check("ggpubr")
[ FAIL 4 | WARN 1 | SKIP 0 | PASS 214 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-compare_means.R:38:3'): compare_means works for Two-samples paired test ──
`results` not equal to `expected`.
Component "p.format": 1 string mismatch
── Failure ('test-compare_means.R:52:3'): compare_means works for pairwise comparisons ──
`results` not equal to `expected`.
Component "p.format": 3 string mismatches
Component "p.signif": 1 string mismatch
── Failure ('test-compare_means.R:64:3'): compare_means works for comparison against reference groups ──
`results` not equal to `expected`.
Component "p.format": 2 string mismatches
── Failure ('test-stat_compare_means.R:101:3'): stat_compare_means works for paired samples comparison ──
`label_coords_expected` not equal to `label_coords_observed`.
Component "label": 1 string mismatch
[ FAIL 4 | WARN 1 | SKIP 0 | PASS 214 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 0.6.1
Check: tests
Result: ERROR
Running 'testthat.R' [28s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> library(ggpubr)
Loading required package: ggplot2
>
> test_check("ggpubr")
[ FAIL 4 | WARN 1 | SKIP 0 | PASS 214 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-compare_means.R:38:3'): compare_means works for Two-samples paired test ──
`results` not equal to `expected`.
Component "p.format": 1 string mismatch
── Failure ('test-compare_means.R:52:3'): compare_means works for pairwise comparisons ──
`results` not equal to `expected`.
Component "p.format": 3 string mismatches
Component "p.signif": 1 string mismatch
── Failure ('test-compare_means.R:64:3'): compare_means works for comparison against reference groups ──
`results` not equal to `expected`.
Component "p.format": 2 string mismatches
── Failure ('test-stat_compare_means.R:101:3'): stat_compare_means works for paired samples comparison ──
`label_coords_expected` not equal to `label_coords_observed`.
Component "label": 1 string mismatch
[ FAIL 4 | WARN 1 | SKIP 0 | PASS 214 ]
Error: Test failures
Execution halted
Flavor: r-devel-windows-x86_64
Current CRAN status: ERROR: 5, NOTE: 8
Version: 0.7.2
Check: Rd files
Result: NOTE
checkRd: (-1) box_m.Rd:19: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) box_m.Rd:20: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) box_m.Rd:21: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) box_m.Rd:22: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) wilcox_test.Rd:91: Lost braces; missing escapes or markup?
91 | distribution of \code{(u+v)/2}, where \code{u} and {v} are independent, each
| ^
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Version: 0.7.2
Check: tests
Result: ERROR
Running ‘spelling.R’ [0s/0s]
Running ‘testthat.R’ [13s/18s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(rstatix)
Attaching package: 'rstatix'
The following object is masked from 'package:stats':
filter
>
> test_check("rstatix")
[ FAIL 7 | WARN 21 | SKIP 0 | PASS 125 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-remove_ns.R:20:3'): remove_ns works when col is logical ──────
`p.false` not equal to c(0.199, 0.063, 0.009).
1/3 mismatches
[1] 0.197 - 0.199 == -0.002
── Failure ('test-wilcox_test.R:22:3'): Checking two-sample unpaired test ──────
signif(res$p, 3) not equal to 0.0645.
1/1 mismatches
[1] 0.0637 - 0.0645 == -8e-04
── Failure ('test-wilcox_test.R:33:3'): Checking two-sample paired test ────────
as.numeric(res$statistic) not equal to 350.
1/1 mismatches
[1] 369 - 350 == 19
── Failure ('test-wilcox_test.R:34:3'): Checking two-sample paired test ────────
signif(res$p, 3) not equal to 0.00431.
1/1 mismatches
[1] 0.00383 - 0.00431 == -0.00048
── Failure ('test-wilcox_test.R:45:3'): Checking pairwise comparisons ──────────
signif(res$p, 3) not equal to c(7.02e-06, 8.41e-08, 0.000177).
3/3 mismatches (average diff: 3.59e-05)
[1] 7.74e-07 - 7.02e-06 == -6.25e-06
[2] 4.35e-11 - 8.41e-08 == -8.41e-08
[3] 7.57e-05 - 1.77e-04 == -1.01e-04
── Failure ('test-wilcox_test.R:56:3'): Checking pairwise comparison against ref group ──
signif(res$p, 3) not equal to c(7.02e-06, 8.41e-08).
2/2 mismatches (average diff: 3.17e-06)
[1] 7.74e-07 - 7.02e-06 == -6.25e-06
[2] 4.35e-11 - 8.41e-08 == -8.41e-08
── Failure ('test-wilcox_test.R:82:3'): Checking grouped tests ─────────────────
signif(res$p, 3) not equal to c(0.0232, 0.00403, 1).
3/3 mismatches (average diff: 0.0064)
[1] 0.01980 - 0.02320 == -0.0034
[2] 0.00223 - 0.00403 == -0.0018
[3] 0.98600 - 1.00000 == -0.0140
[ FAIL 7 | WARN 21 | SKIP 0 | PASS 125 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 0.7.2
Check: tests
Result: ERROR
Running ‘spelling.R’ [0s/0s]
Running ‘testthat.R’ [10s/12s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(rstatix)
Attaching package: 'rstatix'
The following object is masked from 'package:stats':
filter
>
> test_check("rstatix")
[ FAIL 7 | WARN 21 | SKIP 0 | PASS 125 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-remove_ns.R:20:3'): remove_ns works when col is logical ──────
`p.false` not equal to c(0.199, 0.063, 0.009).
1/3 mismatches
[1] 0.197 - 0.199 == -0.002
── Failure ('test-wilcox_test.R:22:3'): Checking two-sample unpaired test ──────
signif(res$p, 3) not equal to 0.0645.
1/1 mismatches
[1] 0.0637 - 0.0645 == -8e-04
── Failure ('test-wilcox_test.R:33:3'): Checking two-sample paired test ────────
as.numeric(res$statistic) not equal to 350.
1/1 mismatches
[1] 369 - 350 == 19
── Failure ('test-wilcox_test.R:34:3'): Checking two-sample paired test ────────
signif(res$p, 3) not equal to 0.00431.
1/1 mismatches
[1] 0.00383 - 0.00431 == -0.00048
── Failure ('test-wilcox_test.R:45:3'): Checking pairwise comparisons ──────────
signif(res$p, 3) not equal to c(7.02e-06, 8.41e-08, 0.000177).
3/3 mismatches (average diff: 3.59e-05)
[1] 7.74e-07 - 7.02e-06 == -6.25e-06
[2] 4.35e-11 - 8.41e-08 == -8.41e-08
[3] 7.57e-05 - 1.77e-04 == -1.01e-04
── Failure ('test-wilcox_test.R:56:3'): Checking pairwise comparison against ref group ──
signif(res$p, 3) not equal to c(7.02e-06, 8.41e-08).
2/2 mismatches (average diff: 3.17e-06)
[1] 7.74e-07 - 7.02e-06 == -6.25e-06
[2] 4.35e-11 - 8.41e-08 == -8.41e-08
── Failure ('test-wilcox_test.R:82:3'): Checking grouped tests ─────────────────
signif(res$p, 3) not equal to c(0.0232, 0.00403, 1).
3/3 mismatches (average diff: 0.0064)
[1] 0.01980 - 0.02320 == -0.0034
[2] 0.00223 - 0.00403 == -0.0018
[3] 0.98600 - 1.00000 == -0.0140
[ FAIL 7 | WARN 21 | SKIP 0 | PASS 125 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.7.2
Check: tests
Result: ERROR
Running ‘spelling.R’
Running ‘testthat.R’ [21s/25s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(rstatix)
Attaching package: 'rstatix'
The following object is masked from 'package:stats':
filter
>
> test_check("rstatix")
[ FAIL 7 | WARN 21 | SKIP 0 | PASS 125 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-remove_ns.R:20:3'): remove_ns works when col is logical ──────
`p.false` not equal to c(0.199, 0.063, 0.009).
1/3 mismatches
[1] 0.197 - 0.199 == -0.002
── Failure ('test-wilcox_test.R:22:3'): Checking two-sample unpaired test ──────
signif(res$p, 3) not equal to 0.0645.
1/1 mismatches
[1] 0.0637 - 0.0645 == -8e-04
── Failure ('test-wilcox_test.R:33:3'): Checking two-sample paired test ────────
as.numeric(res$statistic) not equal to 350.
1/1 mismatches
[1] 369 - 350 == 19
── Failure ('test-wilcox_test.R:34:3'): Checking two-sample paired test ────────
signif(res$p, 3) not equal to 0.00431.
1/1 mismatches
[1] 0.00383 - 0.00431 == -0.00048
── Failure ('test-wilcox_test.R:45:3'): Checking pairwise comparisons ──────────
signif(res$p, 3) not equal to c(7.02e-06, 8.41e-08, 0.000177).
3/3 mismatches (average diff: 3.59e-05)
[1] 7.74e-07 - 7.02e-06 == -6.25e-06
[2] 4.35e-11 - 8.41e-08 == -8.41e-08
[3] 7.57e-05 - 1.77e-04 == -1.01e-04
── Failure ('test-wilcox_test.R:56:3'): Checking pairwise comparison against ref group ──
signif(res$p, 3) not equal to c(7.02e-06, 8.41e-08).
2/2 mismatches (average diff: 3.17e-06)
[1] 7.74e-07 - 7.02e-06 == -6.25e-06
[2] 4.35e-11 - 8.41e-08 == -8.41e-08
── Failure ('test-wilcox_test.R:82:3'): Checking grouped tests ─────────────────
signif(res$p, 3) not equal to c(0.0232, 0.00403, 1).
3/3 mismatches (average diff: 0.0064)
[1] 0.01980 - 0.02320 == -0.0034
[2] 0.00223 - 0.00403 == -0.0018
[3] 0.98600 - 1.00000 == -0.0140
[ FAIL 7 | WARN 21 | SKIP 0 | PASS 125 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 0.7.2
Check: tests
Result: ERROR
Running ‘spelling.R’
Running ‘testthat.R’ [20s/28s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(rstatix)
Attaching package: 'rstatix'
The following object is masked from 'package:stats':
filter
>
> test_check("rstatix")
[ FAIL 7 | WARN 21 | SKIP 0 | PASS 125 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-remove_ns.R:20:3'): remove_ns works when col is logical ──────
`p.false` not equal to c(0.199, 0.063, 0.009).
1/3 mismatches
[1] 0.197 - 0.199 == -0.002
── Failure ('test-wilcox_test.R:22:3'): Checking two-sample unpaired test ──────
signif(res$p, 3) not equal to 0.0645.
1/1 mismatches
[1] 0.0637 - 0.0645 == -8e-04
── Failure ('test-wilcox_test.R:33:3'): Checking two-sample paired test ────────
as.numeric(res$statistic) not equal to 350.
1/1 mismatches
[1] 369 - 350 == 19
── Failure ('test-wilcox_test.R:34:3'): Checking two-sample paired test ────────
signif(res$p, 3) not equal to 0.00431.
1/1 mismatches
[1] 0.00383 - 0.00431 == -0.00048
── Failure ('test-wilcox_test.R:45:3'): Checking pairwise comparisons ──────────
signif(res$p, 3) not equal to c(7.02e-06, 8.41e-08, 0.000177).
3/3 mismatches (average diff: 3.59e-05)
[1] 7.74e-07 - 7.02e-06 == -6.25e-06
[2] 4.35e-11 - 8.41e-08 == -8.41e-08
[3] 7.57e-05 - 1.77e-04 == -1.01e-04
── Failure ('test-wilcox_test.R:56:3'): Checking pairwise comparison against ref group ──
signif(res$p, 3) not equal to c(7.02e-06, 8.41e-08).
2/2 mismatches (average diff: 3.17e-06)
[1] 7.74e-07 - 7.02e-06 == -6.25e-06
[2] 4.35e-11 - 8.41e-08 == -8.41e-08
── Failure ('test-wilcox_test.R:82:3'): Checking grouped tests ─────────────────
signif(res$p, 3) not equal to c(0.0232, 0.00403, 1).
3/3 mismatches (average diff: 0.0064)
[1] 0.01980 - 0.02320 == -0.0034
[2] 0.00223 - 0.00403 == -0.0018
[3] 0.98600 - 1.00000 == -0.0140
[ FAIL 7 | WARN 21 | SKIP 0 | PASS 125 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 0.7.2
Check: tests
Result: ERROR
Running 'spelling.R' [0s]
Running 'testthat.R' [11s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> library(rstatix)
Attaching package: 'rstatix'
The following object is masked from 'package:stats':
filter
>
> test_check("rstatix")
[ FAIL 7 | WARN 21 | SKIP 0 | PASS 125 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-remove_ns.R:20:3'): remove_ns works when col is logical ──────
`p.false` not equal to c(0.199, 0.063, 0.009).
1/3 mismatches
[1] 0.197 - 0.199 == -0.002
── Failure ('test-wilcox_test.R:22:3'): Checking two-sample unpaired test ──────
signif(res$p, 3) not equal to 0.0645.
1/1 mismatches
[1] 0.0637 - 0.0645 == -8e-04
── Failure ('test-wilcox_test.R:33:3'): Checking two-sample paired test ────────
as.numeric(res$statistic) not equal to 350.
1/1 mismatches
[1] 369 - 350 == 19
── Failure ('test-wilcox_test.R:34:3'): Checking two-sample paired test ────────
signif(res$p, 3) not equal to 0.00431.
1/1 mismatches
[1] 0.00383 - 0.00431 == -0.00048
── Failure ('test-wilcox_test.R:45:3'): Checking pairwise comparisons ──────────
signif(res$p, 3) not equal to c(7.02e-06, 8.41e-08, 0.000177).
3/3 mismatches (average diff: 3.59e-05)
[1] 7.74e-07 - 7.02e-06 == -6.25e-06
[2] 4.35e-11 - 8.41e-08 == -8.41e-08
[3] 7.57e-05 - 1.77e-04 == -1.01e-04
── Failure ('test-wilcox_test.R:56:3'): Checking pairwise comparison against ref group ──
signif(res$p, 3) not equal to c(7.02e-06, 8.41e-08).
2/2 mismatches (average diff: 3.17e-06)
[1] 7.74e-07 - 7.02e-06 == -6.25e-06
[2] 4.35e-11 - 8.41e-08 == -8.41e-08
── Failure ('test-wilcox_test.R:82:3'): Checking grouped tests ─────────────────
signif(res$p, 3) not equal to c(0.0232, 0.00403, 1).
3/3 mismatches (average diff: 0.0064)
[1] 0.01980 - 0.02320 == -0.0034
[2] 0.00223 - 0.00403 == -0.0018
[3] 0.98600 - 1.00000 == -0.0140
[ FAIL 7 | WARN 21 | SKIP 0 | PASS 125 ]
Error: Test failures
Execution halted
Flavor: r-devel-windows-x86_64
Current CRAN status: NOTE: 3, OK: 10
Version: 0.5.1
Check: installed package size
Result: NOTE
installed size is 6.0Mb
sub-directories of 1Mb or more:
doc 5.5Mb
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
Health stats visible at Monitor.