Last updated on 2026-02-28 11:49:40 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.5.2 | 14.41 | 264.92 | 279.33 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.5.2 | 9.40 | 180.73 | 190.13 | OK | |
| r-devel-linux-x86_64-fedora-clang | 0.5.1 | 27.00 | 423.78 | 450.78 | ERROR | |
| r-devel-linux-x86_64-fedora-gcc | 0.5.2 | 26.00 | 412.82 | 438.82 | OK | |
| r-devel-macos-arm64 | 0.5.2 | 3.00 | 56.00 | 59.00 | OK | |
| r-devel-windows-x86_64 | 0.5.2 | 16.00 | 249.00 | 265.00 | OK | |
| r-patched-linux-x86_64 | 0.5.1 | 15.35 | 246.79 | 262.14 | ERROR | |
| r-release-linux-x86_64 | 0.5.1 | 14.59 | 247.66 | 262.25 | ERROR | |
| r-release-macos-arm64 | 0.5.2 | 3.00 | 56.00 | 59.00 | OK | |
| r-release-macos-x86_64 | 0.5.2 | 11.00 | 246.00 | 257.00 | OK | |
| r-release-windows-x86_64 | 0.5.2 | 17.00 | 233.00 | 250.00 | OK | |
| r-oldrel-macos-arm64 | 0.5.2 | 3.00 | 57.00 | 60.00 | NOTE | |
| r-oldrel-macos-x86_64 | 0.5.2 | 11.00 | 222.00 | 233.00 | NOTE | |
| r-oldrel-windows-x86_64 | 0.5.2 | 22.00 | 240.00 | 262.00 | NOTE |
Version: 0.5.1
Check: examples
Result: ERROR
Running examples in ‘survminer-Ex.R’ failed
The error most likely occurred in:
> ### Name: surv_fit
> ### Title: Create Survival Curves
> ### Aliases: surv_fit
>
> ### ** Examples
>
>
> library("survival")
Attaching package: ‘survival’
The following object is masked from ‘package:survminer’:
myeloma
> library("magrittr")
>
> # Case 1: One formula and One data set
> #:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
> fit <- surv_fit(Surv(time, status) ~ sex,
+ data = colon)
> surv_pvalue(fit)
variable pval method pval.txt
1 sex 0.6107936 Log-rank p = 0.61
>
>
> # Case 2: List of formulas and One data set.
> # - Different formulas are applied to the same data set
> # - Returns a (named) list of survfit objects
> #:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
> # Create a named list of formulas
> formulas <- list(
+ sex = Surv(time, status) ~ sex,
+ rx = Surv(time, status) ~ rx
+ )
>
> # Fit survival curves for each formula
> fit <- surv_fit(formulas, data = colon)
> surv_pvalue(fit)
$`colon::sex`
variable pval method pval.txt
1 sex 0.6107936 Log-rank p = 0.61
$`colon::rx`
variable pval method pval.txt
1 rx 4.990735e-08 Log-rank p < 0.0001
>
> # Case 3: One formula and List of data sets
> #:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
> fit <- surv_fit(Surv(time, status) ~ sex,
+ data = list(colon, lung))
> surv_pvalue(fit)
$`colon::sex`
variable pval method pval.txt
1 sex 0.6107936 Log-rank p = 0.61
$`lung::sex`
variable pval method pval.txt
1 sex 0.001311165 Log-rank p = 0.0013
>
>
> # Case 4: List of formulas and List of data sets
> # - Each formula is applied to each of the data in the data list
> # - argument: match.fd = FALSE
> #:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
>
> # Create two data sets
> set.seed(123)
> colon1 <- dplyr::sample_frac(colon, 1/2)
> set.seed(1234)
> colon2 <- dplyr::sample_frac(colon, 1/2)
>
> # Create a named list of formulas
> formula.list <- list(
+ sex = Surv(time, status) ~ sex,
+ adhere = Surv(time, status) ~ adhere,
+ rx = Surv(time, status) ~ rx
+ )
>
> # Fit survival curves
> fit <- surv_fit(formula.list, data = list(colon1, colon2),
+ match.fd = FALSE)
Error:
! `combine()` was deprecated in dplyr 1.0.0 and is now defunct.
ℹ Please use `vctrs::vec_c()` instead.
Backtrace:
▆
1. ├─survminer::surv_fit(...)
2. │ └─purrr::map(formula, .map_each, data) %>% dplyr::combine()
3. └─dplyr::combine(.)
4. └─lifecycle::deprecate_stop("1.0.0", "combine()", "vctrs::vec_c()")
5. └─lifecycle:::deprecate_stop0(msg)
6. └─rlang::cnd_signal(...)
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 0.5.1
Check: examples
Result: ERROR
Running examples in ‘survminer-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: surv_fit
> ### Title: Create Survival Curves
> ### Aliases: surv_fit
>
> ### ** Examples
>
>
> library("survival")
Attaching package: ‘survival’
The following object is masked from ‘package:survminer’:
myeloma
> library("magrittr")
>
> # Case 1: One formula and One data set
> #:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
> fit <- surv_fit(Surv(time, status) ~ sex,
+ data = colon)
> surv_pvalue(fit)
variable pval method pval.txt
1 sex 0.6107936 Log-rank p = 0.61
>
>
> # Case 2: List of formulas and One data set.
> # - Different formulas are applied to the same data set
> # - Returns a (named) list of survfit objects
> #:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
> # Create a named list of formulas
> formulas <- list(
+ sex = Surv(time, status) ~ sex,
+ rx = Surv(time, status) ~ rx
+ )
>
> # Fit survival curves for each formula
> fit <- surv_fit(formulas, data = colon)
> surv_pvalue(fit)
$`colon::sex`
variable pval method pval.txt
1 sex 0.6107936 Log-rank p = 0.61
$`colon::rx`
variable pval method pval.txt
1 rx 4.990735e-08 Log-rank p < 0.0001
>
> # Case 3: One formula and List of data sets
> #:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
> fit <- surv_fit(Surv(time, status) ~ sex,
+ data = list(colon, lung))
> surv_pvalue(fit)
$`colon::sex`
variable pval method pval.txt
1 sex 0.6107936 Log-rank p = 0.61
$`lung::sex`
variable pval method pval.txt
1 sex 0.001311165 Log-rank p = 0.0013
>
>
> # Case 4: List of formulas and List of data sets
> # - Each formula is applied to each of the data in the data list
> # - argument: match.fd = FALSE
> #:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
>
> # Create two data sets
> set.seed(123)
> colon1 <- dplyr::sample_frac(colon, 1/2)
> set.seed(1234)
> colon2 <- dplyr::sample_frac(colon, 1/2)
>
> # Create a named list of formulas
> formula.list <- list(
+ sex = Surv(time, status) ~ sex,
+ adhere = Surv(time, status) ~ adhere,
+ rx = Surv(time, status) ~ rx
+ )
>
> # Fit survival curves
> fit <- surv_fit(formula.list, data = list(colon1, colon2),
+ match.fd = FALSE)
Error:
! `combine()` was deprecated in dplyr 1.0.0 and is now defunct.
ℹ Please use `vctrs::vec_c()` instead.
Backtrace:
▆
1. ├─survminer::surv_fit(...)
2. │ └─purrr::map(formula, .map_each, data) %>% dplyr::combine()
3. └─dplyr::combine(.)
4. └─lifecycle::deprecate_stop("1.0.0", "combine()", "vctrs::vec_c()")
5. └─lifecycle:::deprecate_stop0(msg)
6. └─rlang::cnd_signal(...)
Execution halted
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
ggsurvplot_group_by 6.892 0.039 10.076
ggsurvplot 6.415 0.003 8.572
ggsurvplot_add_all 4.910 0.003 6.358
ggsurvplot_facet 4.734 0.047 5.849
ggcoxdiagnostics 4.428 0.061 5.883
ggcoxfunctional 3.806 0.043 5.290
Flavor: r-patched-linux-x86_64
Version: 0.5.1
Check: examples
Result: ERROR
Running examples in ‘survminer-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: surv_fit
> ### Title: Create Survival Curves
> ### Aliases: surv_fit
>
> ### ** Examples
>
>
> library("survival")
Attaching package: ‘survival’
The following object is masked from ‘package:survminer’:
myeloma
> library("magrittr")
>
> # Case 1: One formula and One data set
> #:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
> fit <- surv_fit(Surv(time, status) ~ sex,
+ data = colon)
> surv_pvalue(fit)
variable pval method pval.txt
1 sex 0.6107936 Log-rank p = 0.61
>
>
> # Case 2: List of formulas and One data set.
> # - Different formulas are applied to the same data set
> # - Returns a (named) list of survfit objects
> #:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
> # Create a named list of formulas
> formulas <- list(
+ sex = Surv(time, status) ~ sex,
+ rx = Surv(time, status) ~ rx
+ )
>
> # Fit survival curves for each formula
> fit <- surv_fit(formulas, data = colon)
> surv_pvalue(fit)
$`colon::sex`
variable pval method pval.txt
1 sex 0.6107936 Log-rank p = 0.61
$`colon::rx`
variable pval method pval.txt
1 rx 4.990735e-08 Log-rank p < 0.0001
>
> # Case 3: One formula and List of data sets
> #:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
> fit <- surv_fit(Surv(time, status) ~ sex,
+ data = list(colon, lung))
> surv_pvalue(fit)
$`colon::sex`
variable pval method pval.txt
1 sex 0.6107936 Log-rank p = 0.61
$`lung::sex`
variable pval method pval.txt
1 sex 0.001311165 Log-rank p = 0.0013
>
>
> # Case 4: List of formulas and List of data sets
> # - Each formula is applied to each of the data in the data list
> # - argument: match.fd = FALSE
> #:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
>
> # Create two data sets
> set.seed(123)
> colon1 <- dplyr::sample_frac(colon, 1/2)
> set.seed(1234)
> colon2 <- dplyr::sample_frac(colon, 1/2)
>
> # Create a named list of formulas
> formula.list <- list(
+ sex = Surv(time, status) ~ sex,
+ adhere = Surv(time, status) ~ adhere,
+ rx = Surv(time, status) ~ rx
+ )
>
> # Fit survival curves
> fit <- surv_fit(formula.list, data = list(colon1, colon2),
+ match.fd = FALSE)
Error:
! `combine()` was deprecated in dplyr 1.0.0 and is now defunct.
ℹ Please use `vctrs::vec_c()` instead.
Backtrace:
▆
1. ├─survminer::surv_fit(...)
2. │ └─purrr::map(formula, .map_each, data) %>% dplyr::combine()
3. └─dplyr::combine(.)
4. └─lifecycle::deprecate_stop("1.0.0", "combine()", "vctrs::vec_c()")
5. └─lifecycle:::deprecate_stop0(msg)
6. └─rlang::cnd_signal(...)
Execution halted
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
ggsurvplot_group_by 7.322 0.034 9.961
ggsurvplot 6.541 0.032 7.553
ggsurvplot_facet 5.049 0.009 7.982
ggsurvplot_add_all 4.864 0.008 5.017
ggcoxdiagnostics 4.351 0.068 5.380
ggsurvevents 4.189 0.091 5.278
Flavor: r-release-linux-x86_64
Version: 0.5.2
Check: installed package size
Result: NOTE
installed size is 6.0Mb
sub-directories of 1Mb or more:
doc 5.5Mb
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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