Last updated on 2025-02-23 19:51:22 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.5.8 | 41.08 | 357.47 | 398.55 | NOTE | |
| r-devel-linux-x86_64-debian-gcc | 0.6.8 | 32.09 | 343.18 | 375.27 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 0.6.8 | 905.31 | ERROR | |||
| r-devel-linux-x86_64-fedora-gcc | 0.6.8 | 870.08 | ERROR | |||
| r-devel-macos-arm64 | 0.5.8 | 161.00 | OK | |||
| r-devel-macos-x86_64 | 0.6.8 | 315.00 | OK | |||
| r-devel-windows-x86_64 | 0.5.8 | 46.00 | 317.00 | 363.00 | NOTE | |
| r-patched-linux-x86_64 | 0.5.8 | 44.74 | 330.94 | 375.68 | NOTE | |
| r-release-linux-x86_64 | 0.6.8 | 43.23 | 485.07 | 528.30 | OK | |
| r-release-macos-arm64 | 0.5.8 | 154.00 | NOTE | |||
| r-release-macos-x86_64 | 0.6.8 | 11.00 | ERROR | |||
| r-release-windows-x86_64 | 0.5.8 | 46.00 | 314.00 | 360.00 | NOTE | |
| r-oldrel-macos-arm64 | 0.5.8 | 161.00 | NOTE | |||
| r-oldrel-macos-x86_64 | 0.5.8 | 259.00 | NOTE | |||
| r-oldrel-windows-x86_64 | 0.5.8 | 57.00 | 409.00 | 466.00 | NOTE |
Version: 0.5.8
Check: Rd cross-references
Result: NOTE
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
flankingRegions.Rd: tibble
genotypeList.Rd: tibble
noiseList.Rd: tibble
stringCoverageGenotypeList.Rd: tibble
stringCoverageList.Rd: tibble
workflow.control.Rd: tibble
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-windows-x86_64
Version: 0.6.8
Check: examples
Result: ERROR
Running examples in ‘STRMPS-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: findStutter,stringCoverageGenotypeList-method
> ### Title: Find stutters
> ### Aliases: findStutter,stringCoverageGenotypeList-method
>
> ### ** Examples
>
> # The object returned by merging a stringCoverageList-Object
> # and a genotypeList-Object.
> data("stringCoverageGenotypeList")
>
> stutterList <- findStutter(stringCoverageGenotypeList)
Error in unlist(substitutionMatrix, substitutionMatrix) :
'recursive' must be of length 1
Calls: findStutter ... mpi.XStringSet.pairwiseAlignment -> XStringSet.pairwiseAlignment -> array -> unlist
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.6.8
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘STRMPSworkflow.Rmd’ using rmarkdown
Quitting from lines 169-174 [unnamed-chunk-14] (STRMPSworkflow.Rmd)
Error: processing vignette 'STRMPSworkflow.Rmd' failed with diagnostics:
'recursive' must be of length 1
--- failed re-building ‘STRMPSworkflow.Rmd’
SUMMARY: processing the following file failed:
‘STRMPSworkflow.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.6.8
Check: examples
Result: ERROR
Running examples in ‘STRMPS-Ex.R’ failed
The error most likely occurred in:
> ### Name: findStutter,stringCoverageGenotypeList-method
> ### Title: Find stutters
> ### Aliases: findStutter,stringCoverageGenotypeList-method
>
> ### ** Examples
>
> # The object returned by merging a stringCoverageList-Object
> # and a genotypeList-Object.
> data("stringCoverageGenotypeList")
>
> stutterList <- findStutter(stringCoverageGenotypeList)
Error in unlist(substitutionMatrix, substitutionMatrix) :
'recursive' must be of length 1
Calls: findStutter ... mpi.XStringSet.pairwiseAlignment -> XStringSet.pairwiseAlignment -> array -> unlist
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 0.6.8
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘STRMPSworkflow.Rmd’ using rmarkdown
Quitting from lines 169-174 [unnamed-chunk-14] (STRMPSworkflow.Rmd)
Error: processing vignette 'STRMPSworkflow.Rmd' failed with diagnostics:
'recursive' must be of length 1
--- failed re-building ‘STRMPSworkflow.Rmd’
SUMMARY: processing the following file failed:
‘STRMPSworkflow.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 0.5.8
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘STRaitRazoR’
Flavors: r-patched-linux-x86_64, r-release-macos-arm64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Version: 0.6.8
Check: package dependencies
Result: ERROR
Package required but not available: ‘pwalign’
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Flavor: r-release-macos-x86_64
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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