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Loading, identifying, aggregating, manipulating, and analysing short tandem repeat regions of massively parallel sequencing data in forensic genetics. 'STRMPS' can work with the package 'STRaitRazoR' (an R interface to the 'STRaitRazor' commandline tool) for added speed. 'STRaitRazoR' only works on linux and can found at <https://github.com/svilsen/STRaitRazoR>. The analyses and framework implemented in this package relies on the papers of Vilsen et al. (2017) <doi:10.1016/j.fsigen.2017.01.017> and Vilsen et al. (2018) <doi:10.1016/j.fsigen.2018.04.003>. Lastly, note that the parallelisation in the package relies on mclapply() and, thus, speed-ups will only be seen on UNIX based systems.
| Version: | 0.5.8 |
| Depends: | R (≥ 3.1.0), Biostrings, ShortRead |
| Imports: | methods, utils, IRanges, tidyr, tibble, dplyr, stringr, purrr, parallel |
| Suggests: | STRaitRazoR |
| Published: | 2018-07-02 |
| Author: | Søren B. Vilsen |
| Maintainer: | Søren B. Vilsen <svilsen at math.aau.dk> |
| License: | MIT + file LICENSE |
| NeedsCompilation: | no |
| CRAN checks: | STRMPS results |
| Reference manual: | STRMPS.pdf |
| Package source: | STRMPS_0.5.8.tar.gz |
| Windows binaries: | r-devel: STRMPS_0.5.8.zip, r-release: STRMPS_0.5.8.zip, r-oldrel: STRMPS_0.5.8.zip |
| macOS binaries: | r-release (arm64): STRMPS_0.5.8.tgz, r-oldrel (arm64): STRMPS_0.5.8.tgz, r-release (x86_64): STRMPS_0.5.8.tgz, r-oldrel (x86_64): STRMPS_0.5.8.tgz |
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These binaries (installable software) and packages are in development.
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