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Loading, identifying, aggregating, manipulating, and analysing short tandem repeat regions of massively parallel sequencing data in forensic genetics. The analyses and framework implemented in this package relies on the papers of Vilsen et al. (2017) <doi:10.1016/j.fsigen.2017.01.017> and Vilsen et al. (2018) <doi:10.1016/j.fsigen.2018.04.003>. Note: that the parallelisation in the package relies on mclapply() and, thus, speed-ups will only be seen on UNIX based systems.
| Version: | 0.6.8 |
| Depends: | R (≥ 4.4.0), Biostrings, ShortRead, pwalign |
| Imports: | methods, utils, IRanges, tidyr, tibble, dplyr, stringr, purrr, parallel |
| Suggests: | knitr, rmarkdown |
| Published: | 2025-02-22 |
| DOI: | 10.32614/CRAN.package.STRMPS |
| Author: | Søren B. Vilsen [aut, cre] |
| Maintainer: | Søren B. Vilsen <svilsen at math.aau.dk> |
| License: | MIT + file LICENSE |
| NeedsCompilation: | no |
| Materials: | README |
| CRAN checks: | STRMPS results |
| Reference manual: | STRMPS.pdf |
| Vignettes: |
Short introduction to an STRMPS workflow (source, R code) |
| Package source: | STRMPS_0.6.8.tar.gz |
| Windows binaries: | r-devel: STRMPS_0.5.8.zip, r-release: STRMPS_0.5.8.zip, r-oldrel: STRMPS_0.5.8.zip |
| macOS binaries: | r-devel (arm64): STRMPS_0.5.8.tgz, r-release (arm64): STRMPS_0.5.8.tgz, r-oldrel (arm64): STRMPS_0.5.8.tgz, r-devel (x86_64): STRMPS_0.6.8.tgz, r-release (x86_64): STRMPS_0.5.8.tgz, r-oldrel (x86_64): STRMPS_0.5.8.tgz |
| Old sources: | STRMPS archive |
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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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