CRAN Package Check Results for Package SATS

Last updated on 2026-07-21 18:51:12 CEST.

Flavor	Version	Tinstall	Tcheck	Ttotal	Status	Flags
r-devel-linux-x86_64-debian-clang	1.0.10	20.09	204.65	224.74	OK
r-devel-linux-x86_64-debian-gcc	1.0.10	15.89	144.65	160.54	OK
r-devel-linux-x86_64-fedora-clang	1.0.10	36.00	333.13	369.13	OK
r-devel-linux-x86_64-fedora-gcc	1.0.10	16.00	133.56	149.56	OK
r-devel-windows-x86_64	1.0.10	24.00	185.00	209.00	OK
r-patched-linux-x86_64	1.0.10	22.12	191.02	213.14	OK
r-release-linux-x86_64	1.0.10	20.92	192.02	212.94	OK
r-release-macos-arm64	1.0.10	7.00	55.00	62.00	OK
r-release-macos-x86_64	1.0.10	16.00	173.00	189.00	OK
r-release-windows-x86_64	1.0.10	27.00	181.00	208.00	OK
r-oldrel-macos-arm64	1.0.10	6.00	49.00	55.00	ERROR
r-oldrel-macos-x86_64	1.0.10	18.00	258.00	276.00	ERROR
r-oldrel-windows-x86_64	1.0.10	33.00	240.00	273.00	OK

Check Details

Version: 1.0.10
Check: examples
Result: ERROR Running examples in ‘SATS-Ex.R’ failed The error most likely occurred in: > ### Name: GenerateLMatrix > ### Title: Generate an L Matrix > ### Aliases: GenerateLMatrix > > ### ** Examples > > data(SimData, package="SATS") > > Panel_context <- GeneratePanelSize(genomic_information=SimData$PanelEx, Class="SBS", + SBS_order="COSMIC") Error in (function (cond) : error in evaluating the argument 'x' in selecting a method for function 'getSeq': there is no package called ‘BSgenome.Hsapiens.UCSC.hg19’ Error in myGetSeq(ref.genome, Seq_assay_GRanges) : Make sure package BSgenome.Hsapiens.UCSC.hg19 is loaded Calls: GeneratePanelSize -> GeneratePanelSize_SBS -> myGetSeq Execution halted Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64

Version: 1.0.10
Check: tests
Result: ERROR Running ‘testthat.R’ [3s/3s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(SATS) > > test_check("SATS") Error in (function (cond) : error in evaluating the argument 'x' in selecting a method for function 'getSeq': there is no package called 'BSgenome.Hsapiens.UCSC.hg19' Saving _problems/test-GeneratePanelSize-14.R [ FAIL 1 | WARN 0 | SKIP 0 | PASS 4 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-GeneratePanelSize.R:14:1'): (code run outside of `test_that()`) ── Error in `myGetSeq(ref.genome, Seq_assay_GRanges)`: Make sure package BSgenome.Hsapiens.UCSC.hg19 is loaded Backtrace: ▆ 1. └─SATS::GeneratePanelSize(...) at test-GeneratePanelSize.R:14:1 2. └─SATS:::GeneratePanelSize_SBS(...) 3. └─SATS:::myGetSeq(ref.genome, Seq_assay_GRanges) [ FAIL 1 | WARN 0 | SKIP 0 | PASS 4 ] Error: ! Test failures. Execution halted Flavor: r-oldrel-macos-arm64

Version: 1.0.10
Check: tests
Result: ERROR Running ‘testthat.R’ [7s/19s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(SATS) > > test_check("SATS") Error in (function (cond) : error in evaluating the argument 'x' in selecting a method for function 'getSeq': there is no package called 'BSgenome.Hsapiens.UCSC.hg19' Saving _problems/test-GeneratePanelSize-14.R [ FAIL 1 | WARN 0 | SKIP 0 | PASS 4 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-GeneratePanelSize.R:14:1'): (code run outside of `test_that()`) ── Error in `myGetSeq(ref.genome, Seq_assay_GRanges)`: Make sure package BSgenome.Hsapiens.UCSC.hg19 is loaded Backtrace: ▆ 1. └─SATS::GeneratePanelSize(...) at test-GeneratePanelSize.R:14:1 2. └─SATS:::GeneratePanelSize_SBS(...) 3. └─SATS:::myGetSeq(ref.genome, Seq_assay_GRanges) [ FAIL 1 | WARN 0 | SKIP 0 | PASS 4 ] Error: ! Test failures. Execution halted Flavor: r-oldrel-macos-x86_64