The hardware and bandwidth for this mirror is donated by dogado GmbH, the Webhosting and Full Service-Cloud Provider. Check out our Wordpress Tutorial.
If you wish to report a bug, or if you are interested in having us mirror your free-software or open-source project, please feel free to contact us at mirror[@]dogado.de.
Performs mutational signature analysis for targeted sequenced tumors. Unlike the canonical analysis of mutational signatures, SATS factorizes the mutation counts matrix into a panel context matrix (measuring the size of the targeted sequenced genome for each tumor in the unit of million base pairs (Mb)), a signature profile matrix, and a signature activity matrix. SATS also calculates the expected number of mutations attributed by a signature, namely signature expectancy, for each targeted sequenced tumor. For more details see Lee et al. (2024) <doi:10.1101/2023.05.18.23290188>.
Version: | 1.0.4 |
Depends: | R (≥ 4.1.0) |
Imports: | stats, glmnet, GenomicRanges, IRanges, Biostrings, dplyr, BSgenome.Hsapiens.UCSC.hg19 |
Suggests: | testthat |
Published: | 2025-07-05 |
DOI: | 10.32614/CRAN.package.SATS |
Author: | DongHyuk Lee [aut], Bin Zhu [aut], Bill Wheeler [cre] |
Maintainer: | Bill Wheeler <wheelerb at imsweb.com> |
License: | GPL-2 |
NeedsCompilation: | yes |
CRAN checks: | SATS results |
Reference manual: | SATS.pdf |
Package source: | SATS_1.0.4.tar.gz |
Windows binaries: | r-devel: not available, r-release: not available, r-oldrel: not available |
macOS binaries: | r-release (arm64): not available, r-oldrel (arm64): not available, r-release (x86_64): not available, r-oldrel (x86_64): not available |
Please use the canonical form https://CRAN.R-project.org/package=SATS to link to this page.
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
Health stats visible at Monitor.