CRAN Package Check Results for Package OmopSketch

Last updated on 2026-02-10 21:50:07 CET.

Flavor	Version	Tinstall	Tcheck	Ttotal	Status	Flags
r-devel-linux-x86_64-debian-clang	1.0.1				OK
r-devel-linux-x86_64-debian-gcc	1.0.1	4.15	266.46	270.61	OK
r-devel-linux-x86_64-fedora-clang	1.0.1	14.00	671.40	685.40	OK
r-devel-linux-x86_64-fedora-gcc	1.0.1	12.00	623.16	635.16	OK
r-devel-windows-x86_64	1.0.1	16.00	324.00	340.00	OK
r-patched-linux-x86_64	1.0.0	7.63	913.91	921.54	ERROR
r-release-linux-x86_64	1.0.1	7.24	383.86	391.10	OK
r-release-macos-arm64	1.0.1	2.00	76.00	78.00	OK
r-release-macos-x86_64	1.0.1	5.00	302.00	307.00	OK
r-release-windows-x86_64	1.0.0	10.00	812.00	822.00	OK
r-oldrel-macos-arm64	1.0.1	2.00	80.00	82.00	OK
r-oldrel-macos-x86_64	1.0.1			15.00	ERROR
r-oldrel-windows-x86_64	1.0.0	16.00	1064.00	1080.00	ERROR

Check Details

Version: 1.0.0
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: ... --- re-building ‘database_characteristics.Rmd’ using rmarkdown --- finished re-building ‘database_characteristics.Rmd’ --- re-building ‘missing_data.Rmd’ using rmarkdown --- finished re-building ‘missing_data.Rmd’ --- re-building ‘summarise_clinical_tables_records.Rmd’ using rmarkdown --- finished re-building ‘summarise_clinical_tables_records.Rmd’ --- re-building ‘summarise_concept_id_counts.Rmd’ using rmarkdown --- finished re-building ‘summarise_concept_id_counts.Rmd’ --- re-building ‘summarise_observation_period.Rmd’ using rmarkdown Quitting from summarise_observation_period.Rmd:160-168 [unnamed-chunk-10] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `if (x$plot_header_text_bold) ...`: ! argument is of length zero --- Backtrace: ▆ 1. └─OmopSketch::plotObservationPeriod(...) 2. └─visOmopResults::barPlot(...) 3. └─visOmopResults:::validateStyle(style = style, obj = "plot", type = type) 4. └─visOmopResults:::formatPlotStyle(x = internalStyle, fontsizeRef = fontsizeRef) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'summarise_observation_period.Rmd' failed with diagnostics: argument is of length zero --- failed re-building ‘summarise_observation_period.Rmd’ --- re-building ‘summarise_person.Rmd’ using rmarkdown --- finished re-building ‘summarise_person.Rmd’ --- re-building ‘summarise_trend.Rmd’ using rmarkdown Quitting from summarise_trend.Rmd:262-277 [unnamed-chunk-15] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `if (x$plot_header_text_bold) ...`: ! argument is of length zero --- Backtrace: ▆ 1. └─OmopSketch::plotTrend(result = result, colour = "sex", facet = "age_group") 2. └─visOmopResults::scatterPlot(...) 3. └─visOmopResults:::validateStyle(style = style, obj = "plot", type = type) 4. └─visOmopResults:::formatPlotStyle(x = internalStyle, fontsizeRef = fontsizeRef) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'summarise_trend.Rmd' failed with diagnostics: argument is of length zero --- failed re-building ‘summarise_trend.Rmd’ SUMMARY: processing the following files failed: ‘summarise_observation_period.Rmd’ ‘summarise_trend.Rmd’ Error: Vignette re-building failed. Execution halted Flavor: r-patched-linux-x86_64

Version: 1.0.1
Check: package dependencies
Result: ERROR Package required and available but unsuitable version: ‘PatientProfiles’ See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ manual. Flavor: r-oldrel-macos-x86_64

Version: 1.0.0
Check: installed package size
Result: NOTE installed size is 31.7Mb sub-directories of 1Mb or more: doc 29.4Mb help 2.0Mb Flavor: r-oldrel-windows-x86_64

Version: 1.0.0
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: --- re-building 'database_characteristics.Rmd' using rmarkdown --- finished re-building 'database_characteristics.Rmd' --- re-building 'missing_data.Rmd' using rmarkdown --- finished re-building 'missing_data.Rmd' --- re-building 'summarise_clinical_tables_records.Rmd' using rmarkdown --- finished re-building 'summarise_clinical_tables_records.Rmd' --- re-building 'summarise_concept_id_counts.Rmd' using rmarkdown --- finished re-building 'summarise_concept_id_counts.Rmd' --- re-building 'summarise_observation_period.Rmd' using rmarkdown Quitting from summarise_observation_period.Rmd:160-168 [unnamed-chunk-10] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `if (x$plot_header_text_bold) ...`: ! argument is of length zero --- Backtrace: ▆ 1. └─OmopSketch::plotObservationPeriod(...) 2. └─visOmopResults::barPlot(...) 3. └─visOmopResults:::validateStyle(style = style, obj = "plot", type = type) 4. └─visOmopResults:::formatPlotStyle(x = internalStyle, fontsizeRef = fontsizeRef) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'summarise_observation_period.Rmd' failed with diagnostics: argument is of length zero --- failed re-building 'summarise_observation_period.Rmd' --- re-building 'summarise_person.Rmd' using rmarkdown --- finished re-building 'summarise_person.Rmd' --- re-building 'summarise_trend.Rmd' using rmarkdown Quitting from summarise_trend.Rmd:262-277 [unnamed-chunk-15] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `if (x$plot_header_text_bold) ...`: ! argument is of length zero --- Backtrace: ▆ 1. └─OmopSketch::plotTrend(result = result, colour = "sex", facet = "age_group") 2. └─visOmopResults::scatterPlot(...) 3. └─visOmopResults:::validateStyle(style = style, obj = "plot", type = type) 4. └─visOmopResults:::formatPlotStyle(x = internalStyle, fontsizeRef = fontsizeRef) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'summarise_trend.Rmd' failed with diagnostics: argument is of length zero --- failed re-building 'summarise_trend.Rmd' SUMMARY: processing the following files failed: 'summarise_observation_period.Rmd' 'summarise_trend.Rmd' Error: Vignette re-building failed. Execution halted Flavor: r-oldrel-windows-x86_64