CRAN Package Check Results for Package EBASE

Last updated on 2025-12-04 09:49:51 CET.

Flavor	Version	Tinstall	Tcheck	Ttotal	Status	Flags
r-devel-linux-x86_64-debian-clang	1.1.0	6.12	142.74	148.86	NOTE
r-devel-linux-x86_64-debian-gcc	1.1.0	4.60	94.16	98.76	NOTE
r-devel-linux-x86_64-fedora-clang	1.1.0	14.00	219.86	233.86	NOTE
r-devel-linux-x86_64-fedora-gcc	1.1.0	15.00	219.65	234.65	NOTE
r-devel-windows-x86_64	1.1.0	9.00	252.00	261.00	NOTE
r-patched-linux-x86_64	1.1.0	6.38	135.14	141.52	NOTE
r-release-linux-x86_64	1.1.0	5.18	135.61	140.79	NOTE
r-release-macos-arm64	1.1.0				NOTE
r-release-macos-x86_64	1.1.0	6.00	343.00	349.00	NOTE
r-release-windows-x86_64	1.1.0	10.00	258.00	268.00	NOTE
r-oldrel-macos-arm64	1.1.0				OK
r-oldrel-macos-x86_64	1.1.0	5.00	239.00	244.00	OK
r-oldrel-windows-x86_64	1.1.0	13.00	362.00	375.00	ERROR

Check Details

Version: 1.1.0
Check: DESCRIPTION meta-information
Result: NOTE Missing dependency on R >= 4.1.0 because package code uses the pipe |> or function shorthand \(...) syntax added in R 4.1.0. File(s) using such syntax: ‘ebase_plot.R’ ‘ebase_prep.R’ Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64

Version: 1.1.0
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: --- re-building 'EBASE.Rmd' using rmarkdown Quitting from EBASE.Rmd:256-265 [unnamed-chunk-25] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `{ dat.sub <- dat[dat$grp == i, ] num.measurements <- nrow(dat.sub) DO_obs <- dat.sub$DO_obs PAR <- dat.sub$PAR DO_sat <- dat.sub$DO_sat sc <- dat.sub$sc Z <- dat.sub$Z U10 <- dat.sub$WSpd DO_start <- DO_obs[1] if (doave) DO_start <- mean(DO_obs) dat.list <- list("num.measurements", "nstepd", "interval", "aprior", "rprior", "bprior", "bmax", "DO_obs", "PAR", "DO_sat", "Z", "sc", "U10", "DO_start") params <- c("ats", "bts", "gppts", "erts", "gets", "nemts", "DO_mod") metabfit <- do.call(jags.parallel, list(data = dat.list, parameters.to.save = params, model.file = mod_in, n.chains = n.chains, n.iter = n.iter, n.burnin = n.burnin, n.thin = n.thin, n.cluster = n.chains, DIC = TRUE, jags.seed = 123, digits = 5)) metabfit <- metab_update(metabfit, update.chains, n.iter) srf <- metabfit$BUGSoutput$summary[, 8] Rhat.test <- ifelse(any(srf > 1.1, na.rm = TRUE) == TRUE, "Check convergence", "Fine") cred <- data.frame(metabfit$BUGSoutput$summary) cred$var <- row.names(cred) cred$var <- gsub("\\[|\\]|\\d+", "", cred$var) result <- data.frame(Date = dat.sub$Date, grp = dat.sub$grp, Z = Z, DO_obs = dat.sub$ DO_obs, DO_mod = metabfit$BUGSoutput$mean$DO_mod, DO_modlo = cred[cred$ var == "DO_mod", "X2.5."], DO_modhi = cred[cred$var == "DO_mod", "X97.5."], DateTimeStamp = dat.sub$DateTimeStamp, ats = c(NA, metabfit$BUGSoutput$mean$ ats), atslo = c(NA, cred[cred$var == "ats", "X2.5."]), atshi = c(NA, cred[ cred$var == "ats", "X97.5."]), bts = c(NA, metabfit$BUGSoutput$mean$bts), btslo = c(NA, cred[cred$var == "bts", "X2.5."]), btshi = c(NA, cred[cred$ var == "bts", "X97.5."]), gppts = c(NA, metabfit$BUGSoutput$mean$gppts), gpptslo = c(NA, cred[cred$var == "gppts", "X2.5."]), gpptshi = c(NA, cred[ cred$var == "gppts", "X97.5."]), erts = c(NA, metabfit$BUGSoutput$mean$erts), ertslo = c(NA, cred[cred$var == "erts", "X2.5."]), ertshi = c(NA, cred[cred$ var == "erts", "X97.5."]), nemts = c(NA, metabfit$BUGSoutput$mean$nemts), nemtslo = c(NA, cred[cred$var == "nemts", "X2.5."]), nemtshi = c(NA, cred[ cred$var == "nemts", "X97.5."]), gets = c(NA, metabfit$BUGSoutput$mean$gets), getslo = c(NA, cred[cred$var == "gets", "X2.5."]), getshi = c(NA, cred[cred$ var == "gets", "X97.5."]), dDO = c(NA, diff(metabfit$BUGSoutput$mean$DO_mod)), converge = Rhat.test) rsq <- lm(DO_mod ~ DO_obs, data = result) %>% summary() %>% .$r.squared result$rsq <- rsq return(result) }`: ! task 2 failed - "creation of server socket failed: port 11802 cannot be opened" --- Backtrace: ▆ 1. └─EBASE::ebase(...) 2. └─... %dopar% ... 3. └─e$fun(obj, substitute(ex), parent.frame(), e$data) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'EBASE.Rmd' failed with diagnostics: task 2 failed - "creation of server socket failed: port 11802 cannot be opened" --- failed re-building 'EBASE.Rmd' SUMMARY: processing the following file failed: 'EBASE.Rmd' Error: Vignette re-building failed. Execution halted Flavor: r-oldrel-windows-x86_64