ubms: Bayesian Models for Data from Unmarked Animals using 'Stan'

Fit Bayesian hierarchical models of animal abundance and occurrence via the 'rstan' package, the R interface to the 'Stan' C++ library. Supported models include single-season occupancy, dynamic occupancy, and N-mixture abundance models. Covariates on model parameters are specified using a formula-based interface similar to package 'unmarked', while also allowing for estimation of random slope and intercept terms. References: Carpenter et al. (2017) <doi:10.18637/jss.v076.i01>; Fiske and Chandler (2011) <doi:10.18637/jss.v043.i10>.

Version:	1.2.7
Depends:	R (≥ 3.4.0), unmarked
Imports:	ggplot2 (≥ 2.0.0), gridExtra, loo, Matrix (≥ 1.5-0), methods, pbapply, Rcpp (≥ 0.12.0), reformulas, rlang, RSpectra, rstan (≥ 2.26.0), rstantools (≥ 2.0.0), stats
LinkingTo:	BH (≥ 1.66.0), Rcpp (≥ 0.12.0), RcppArmadillo (≥ 0.9.300.2.0), RcppEigen (≥ 0.3.3.3.0), rstan (≥ 2.26.0), StanHeaders (≥ 2.26.0), RcppParallel (≥ 5.0.2)
Suggests:	knitr, raster, rmarkdown, terra, testthat
Published:	2024-10-01
DOI:	10.32614/CRAN.package.ubms
Author:	Ken Kellner [cre, aut]
Maintainer:	Ken Kellner <contact at kenkellner.com>
BugReports:	https://github.com/biodiverse/ubms/issues
License:	GPL (≥ 3)
URL:	https://biodiverse.github.io/ubms/
NeedsCompilation:	yes
SystemRequirements:	GNU make
Citation:	ubms citation info
Materials:	NEWS
CRAN checks:	ubms results

Documentation:

Reference manual:	ubms.pdf
Vignettes:	Comparing models fit in ubms and JAGS (source) Random effects in ubms (source) Spatial Models in ubms (source) Overview of ubms (source, R code)

Downloads:

Package source:	ubms_1.2.7.tar.gz
Windows binaries:	r-devel: ubms_1.2.7.zip, r-release: ubms_1.2.7.zip, r-oldrel: ubms_1.2.7.zip
macOS binaries:	r-release (arm64): ubms_1.2.7.tgz, r-oldrel (arm64): ubms_1.2.7.tgz, r-release (x86_64): ubms_1.2.7.tgz, r-oldrel (x86_64): ubms_1.2.7.tgz
Old sources:	ubms archive

Linking:

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