The hardware and bandwidth for this mirror is donated by dogado GmbH, the Webhosting and Full Service-Cloud Provider. Check out our Wordpress Tutorial.
If you wish to report a bug, or if you are interested in having us mirror your free-software or open-source project, please feel free to contact us at mirror[@]dogado.de.
Fit Bayesian hierarchical models of animal abundance and occurrence via the 'rstan' package, the R interface to the 'Stan' C++ library. Supported models include single-season occupancy, dynamic occupancy, and N-mixture abundance models. Covariates on model parameters are specified using a formula-based interface similar to package 'unmarked', while also allowing for estimation of random slope and intercept terms. References: Carpenter et al. (2017) <doi:10.18637/jss.v076.i01>; Fiske and Chandler (2011) <doi:10.18637/jss.v043.i10>.
Version: | 1.2.6 |
Depends: | R (≥ 3.4.0), unmarked |
Imports: | ggplot2 (≥ 2.0.0), gridExtra, lme4, loo, Matrix (≥ 1.5-0), methods, pbapply, Rcpp (≥ 0.12.0), rlang, RSpectra, rstan (≥ 2.26.0), rstantools (≥ 2.0.0), stats |
LinkingTo: | BH (≥ 1.66.0), Rcpp (≥ 0.12.0), RcppArmadillo (≥ 0.9.300.2.0), RcppEigen (≥ 0.3.3.3.0), rstan (≥ 2.26.0), StanHeaders (≥ 2.26.0), RcppParallel (≥ 5.0.2) |
Suggests: | covr, devtools, knitr, pkgdown, raster, rmarkdown, roxygen2, testthat |
Published: | 2023-09-11 |
DOI: | 10.32614/CRAN.package.ubms |
Author: | Ken Kellner [cre, aut] |
Maintainer: | Ken Kellner <contact at kenkellner.com> |
BugReports: | https://github.com/kenkellner/ubms/issues |
License: | GPL (≥ 3) |
URL: | https://kenkellner.com/ubms/ |
NeedsCompilation: | yes |
SystemRequirements: | GNU make |
Citation: | ubms citation info |
Materials: | NEWS |
CRAN checks: | ubms results |
Reference manual: | ubms.pdf |
Vignettes: |
Comparing models fit in ubms and JAGS Random effects in ubms Spatial Models in ubms Overview of ubms |
Package source: | ubms_1.2.6.tar.gz |
Windows binaries: | r-devel: ubms_1.2.6.zip, r-release: ubms_1.2.6.zip, r-oldrel: ubms_1.2.6.zip |
macOS binaries: | r-release (arm64): ubms_1.2.6.tgz, r-oldrel (arm64): ubms_1.2.6.tgz, r-release (x86_64): ubms_1.2.6.tgz, r-oldrel (x86_64): ubms_1.2.6.tgz |
Old sources: | ubms archive |
Please use the canonical form https://CRAN.R-project.org/package=ubms to link to this page.
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
Health stats visible at Monitor.