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treats: Trees and Traits Simulations

A modular package for simulating phylogenetic trees and species traits jointly. Trees can be simulated using modular birth-death parameters (e.g. changing starting parameters or algorithm rules). Traits can be simulated in any way designed by the user. The growth of the tree and the traits can influence each other through modifiers objects providing rules for affecting each other. Finally, events can be created to modify both the tree and the traits under specific conditions ( Guillerme, 2024 <doi:10.1111/2041-210X.14306>).

Version: 1.1
Depends: R (≥ 4.0.0), ape, dispRity, stats
Imports: graphics, geiger, MASS, methods, utils, rgl
Suggests: testthat, knitr
Published: 2024-11-11
DOI: 10.32614/CRAN.package.treats
Author: Thomas Guillerme ORCID iD [aut, cre, cph]
Maintainer: Thomas Guillerme <guillert at tcd.ie>
License: GPL-3
URL: https://github.com/TGuillerme/treats
NeedsCompilation: yes
Citation: treats citation info
Materials: NEWS
In views: Phylogenetics
CRAN checks: treats results

Documentation:

Reference manual: treats.pdf

Downloads:

Package source: treats_1.1.tar.gz
Windows binaries: r-devel: treats_1.1.zip, r-release: treats_1.1.zip, r-oldrel: treats_1.1.zip
macOS binaries: r-release (arm64): treats_1.1.tgz, r-oldrel (arm64): treats_1.1.tgz, r-release (x86_64): treats_1.1.tgz, r-oldrel (x86_64): treats_1.1.tgz
Old sources: treats archive

Linking:

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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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