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dispRitreats
to now work just like the dispRity
function on treats
objects.events
now generates singleton nodes (and associated trait values if needed) at the time of the event before applying the modification.verbose
option to treats
for when using the option null.error = integer()
.treats
outputs with replicates = <integer>
.drop.things
now works with replicated treats
objects (or multiPhylo
)"treats"
sub-classestime.condition
is now changed to age.condition
.dispRitreats
to convert "treats"
output as input for dispRity
crude.bd.est
for a crude estimation of speciation and extinction rates from an input tree.map.traits
for mapping a "traits"
onto a tree.transition.matrix
for designing transition matrices for discrete characters.traits
process: discrete.process
to generate discrete characters.dads
to treats
treats
has now a save.steps
option to create internal nodes at regular intervals or specified ones and a replicates
option to automatically replicate the simulations.make.bd.parms
utility function for sampling from distributions (jointly or not).modification
and condition
for events.traits
can now have a background component that triggers trait generation in the background each time traits are generated.events
are now fully handled and modular.make.events
function for helping to make events.make.modifiers
now has a select.taxa
argument.make.treats
to create "treats"
objects from a tree and a dataset (e.g. matrix). This can be useful for using the the plot.treats
function on non "treats"
objects."events"
class objects are now implemented and fully functional with the make.events
function and the pre-made mass.extinction
and founding.event
events.drop.things
to drop fossils or livings species or internal nodes from "treats"
objects.BM.process
and OU.process
to now be exact (thanks to Rachel Warnock and Louie Rombaut for spotting that one).bd.params
print display when inputs are numeric.treats
function first release.make.traits
function first release.make.modifiers
function first release.print
and plot
functions for "treats"
objects.parent.traits
utility function first release.These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
Health stats visible at Monitor.