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Tools to calculate stability indices with parametric, non-parametric and probabilistic approaches. The basic data format requirement for 'toolStability' is a data frame with 3 columns including numeric trait values, genotype,and environmental labels. Output format of each function is the dataframe with chosen stability index for each genotype. Function "table_stability" offers the summary table of all stability indices in this package. This R package toolStability is part of the main publication: Wang, Casadebaig and Chen (2023) <doi:10.1007/s00122-023-04264-7>. Analysis pipeline for main publication can be found on github: <https://github.com/Illustratien/Wang_2023_TAAG/tree/V1.0.0>. Sample dataset in this package is derived from another publication: Casadebaig P, Zheng B, Chapman S et al. (2016) <doi:10.1371/journal.pone.0146385>. For detailed documentation of dataset, please see on Zenodo <doi:10.5281/zenodo.4729636>. Indices used in this package are from: Döring TF, Reckling M (2018) <doi:10.1016/j.eja.2018.06.007>. Eberhart SA, Russell WA (1966) <doi:10.2135/cropsci1966.0011183X000600010011x>. Eskridge KM (1990) <doi:10.2135/cropsci1990.0011183X003000020025x>. Finlay KW, Wilkinson GN (1963) <doi:10.1071/AR9630742>. Hanson WD (1970) Genotypic stability. <doi:10.1007/BF00285245>. Lin CS, Binns MR (1988) <https://cdnsciencepub.com/doi/abs/10.4141/cjps88-018>. Nassar R, Hühn M (1987). Pinthus MJ (1973) <doi:10.1007/BF00021563>. Römer T (1917). Shukla GK (1972). Wricke G (1962).
| Version: | 0.1.2 |
| Depends: | R (≥ 3.5.0) |
| Imports: | dplyr, data.table, Rdpack, nortest, stats |
| Suggests: | testthat (≥ 3.0.0), ggplot2, knitr, rmarkdown, pkgdown, pander, XML, httr, RCurl, covr |
| Published: | 2023-03-13 |
| Author: | Tien-Cheng Wang [aut, cre], Tsu-Wei Chen [com] |
| Maintainer: | Tien-Cheng Wang <wangtien at student.hu-berlin.de> |
| BugReports: | https://github.com/Illustratien/toolStability/issues |
| License: | GPL (≥ 3) |
| URL: | https://illustratien.github.io/toolStability/, https://link.springer.com/article/10.1007/s00122-023-04264-7, https://github.com/Illustratien/toolStability, https://github.com/Illustratien/Wang_2023_TAAG, https://doi.org/10.5281/zenodo.4729636 |
| NeedsCompilation: | no |
| Materials: | README NEWS |
| In views: | Agriculture |
| CRAN checks: | toolStability results |
| Reference manual: | toolStability.pdf |
| Vignettes: |
Introduction to toolStability |
| Package source: | toolStability_0.1.2.tar.gz |
| Windows binaries: | r-devel: toolStability_0.1.2.zip, r-release: toolStability_0.1.2.zip, r-oldrel: toolStability_0.1.2.zip |
| macOS binaries: | r-release (arm64): toolStability_0.1.2.tgz, r-oldrel (arm64): toolStability_0.1.2.tgz, r-release (x86_64): toolStability_0.1.2.tgz, r-oldrel (x86_64): toolStability_0.1.2.tgz |
| Old sources: | toolStability archive |
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