The hardware and bandwidth for this mirror is donated by dogado GmbH, the Webhosting and Full Service-Cloud Provider. Check out our Wordpress Tutorial.
If you wish to report a bug, or if you are interested in having us mirror your free-software or open-source project, please feel free to contact us at mirror[@]dogado.de.

smartsnp: Fast Multivariate Analyses of Big Genomic Data

Fast computation of multivariate analyses of small (10s to 100s markers) to big (1000s to 100000s) genotype data. Runs Principal Component Analysis allowing for centering, z-score standardization and scaling for genetic drift, projection of ancient samples to modern genetic space and multivariate tests for differences in group location (Permutation-Based Multivariate Analysis of Variance) and dispersion (Permutation-Based Multivariate Analysis of Dispersion).

Version: 1.1.0
Depends: R (≥ 3.6.0)
Imports: bootSVD, data.table, foreach, Rfast, RSpectra, vegan, vroom, Rcpp
LinkingTo: Rcpp, RcppArmadillo
Published: 2021-03-04
DOI: 10.32614/CRAN.package.smartsnp
Author: Salvador Herrando-Perez ORCID iD [aut], Ray Tobler ORCID iD [ctb], Christian Huber ORCID iD [ctb, cre]
Maintainer: Christian Huber <christian.domitian.huber at gmail.com>
License: MIT + file LICENSE
NeedsCompilation: yes
Language: en-GB
Materials: README NEWS
CRAN checks: smartsnp results

Documentation:

Reference manual: smartsnp.pdf

Downloads:

Package source: smartsnp_1.1.0.tar.gz
Windows binaries: r-devel: smartsnp_1.1.0.zip, r-release: smartsnp_1.1.0.zip, r-oldrel: smartsnp_1.1.0.zip
macOS binaries: r-release (arm64): smartsnp_1.1.0.tgz, r-oldrel (arm64): smartsnp_1.1.0.tgz, r-release (x86_64): smartsnp_1.1.0.tgz, r-oldrel (x86_64): smartsnp_1.1.0.tgz

Linking:

Please use the canonical form https://CRAN.R-project.org/package=smartsnp to link to this page.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
Health stats visible at Monitor.