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Estimating the force of infection from time varying, age varying, or constant serocatalytic models from population based seroprevalence studies using a Bayesian framework, including data simulation functions enabling the generation of serological surveys based on this models. This tool also provides a flexible prior specification syntax for the force of infection and the seroreversion rate, as well as methods to assess model convergence and comparison criteria along with useful visualisation functions.
Version: | 1.0.3 |
Depends: | R (≥ 4.1.0) |
Imports: | bayesplot, checkmate, config, cowplot, dplyr, ggplot2, glue, graphics, loo, expm, methods, purrr, Rcpp (≥ 0.12.0), rstan (≥ 2.18.1), rstantools (≥ 2.3.1), stats, tibble, tidyr |
LinkingTo: | BH (≥ 1.66.0), Rcpp (≥ 0.12.0), RcppEigen (≥ 0.3.3.3.0), RcppParallel (≥ 5.0.1), rstan (≥ 2.18.1), StanHeaders (≥ 2.18.0) |
Suggests: | knitr, rlang, rmarkdown, scales, spelling, testthat (≥ 3.0.0) |
Published: | 2025-03-31 |
DOI: | 10.32614/CRAN.package.serofoi |
Author: | Zulma M. Cucunubá |
Maintainer: | Zulma M. Cucunubá <zulma.cucunuba at javeriana.edu.co> |
BugReports: | https://github.com/epiverse-trace/serofoi/issues |
License: | MIT + file LICENSE |
URL: | https://github.com/epiverse-trace/serofoi, https://epiverse-trace.github.io/serofoi/ |
NeedsCompilation: | yes |
SystemRequirements: | GNU make |
Language: | en-GB |
Materials: | README NEWS |
CRAN checks: | serofoi results |
Reference manual: | serofoi.pdf |
Vignettes: |
An introduction to serofoi (source, R code) |
Package source: | serofoi_1.0.3.tar.gz |
Windows binaries: | r-devel: serofoi_1.0.3.zip, r-release: serofoi_1.0.3.zip, r-oldrel: serofoi_1.0.3.zip |
macOS binaries: | r-devel (arm64): serofoi_1.0.3.tgz, r-release (arm64): serofoi_1.0.3.tgz, r-oldrel (arm64): serofoi_1.0.3.tgz, r-devel (x86_64): serofoi_1.0.3.tgz, r-release (x86_64): serofoi_1.0.3.tgz, r-oldrel (x86_64): serofoi_1.0.3.tgz |
Please use the canonical form https://CRAN.R-project.org/package=serofoi to link to this page.
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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