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Implements various tests, visualizations, and metrics for diagnosing convergence of MCMC chains in phylogenetics. It implements and automates many of the functions of the AWTY package in the R environment, as well as a host of other functions. Warren, Geneva, and Lanfear (2017), <doi:10.1093/molbev/msw279>.
| Version: | 1.0.3 |
| Depends: | R (≥ 3.3.0), ape, ggplot2 |
| Imports: | reshape2, phangorn, coda, viridis, grid, plyr, ggdendro, GGally, parallel, TreeDist |
| Suggests: | knitr, testthat, markdown, rmarkdown, stringi |
| Published: | 2025-03-27 |
| DOI: | 10.32614/CRAN.package.rwty |
| Author: | Dan Warren [aut, cre], Anthony Geneva [aut], Rob Lanfear [aut], Luke Harmon [ctb], April Wright [ctb], Diego Mallo [ctb], Klaus Schliep [ctb], Kelly Luke [ctb], Kendall Michelle [ctb], Smith Martin [ctb] |
| Maintainer: | Dan Warren <dan.l.warren at gmail.com> |
| License: | GPL-2 |
| NeedsCompilation: | no |
| Citation: | rwty citation info |
| Materials: | README |
| CRAN checks: | rwty results |
| Reference manual: | rwty.pdf |
| Package source: | rwty_1.0.3.tar.gz |
| Windows binaries: | r-devel: rwty_1.0.3.zip, r-release: rwty_1.0.3.zip, r-oldrel: rwty_1.0.3.zip |
| macOS binaries: | r-devel (arm64): rwty_1.0.3.tgz, r-release (arm64): rwty_1.0.3.tgz, r-oldrel (arm64): rwty_1.0.3.tgz, r-devel (x86_64): rwty_1.0.3.tgz, r-release (x86_64): rwty_1.0.3.tgz, r-oldrel (x86_64): rwty_1.0.3.tgz |
| Old sources: | rwty archive |
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