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Proteins reside in either the cell plasma or in the cell membrane. A membrane protein goes through the membrane at least once. Given the amino acid sequence of a membrane protein, the tool 'PureseqTM' (<https://github.com/PureseqTM/pureseqTM_package>, as described in "Efficient And Accurate Prediction Of Transmembrane Topology From Amino acid sequence only.", Wang, Qing, et al (2019), <doi:10.1101/627307>), can predict the topology of a membrane protein. This package allows one to use 'PureseqTM' from R.
Version: | 1.4 |
Depends: | R (≥ 3.5.0) |
Imports: | data.table, devtools, dplyr, ggplot2, Peptides, plyr, rappdirs, readr, stringr, tibble, Rcpp |
LinkingTo: | Rcpp |
Suggests: | testthat, knitr, markdown, rmarkdown, profvis |
Published: | 2023-04-06 |
DOI: | 10.32614/CRAN.package.pureseqtmr |
Author: | Richèl J.C. Bilderbeek
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Maintainer: | Richèl J.C. Bilderbeek <richel at richelbilderbeek.nl> |
BugReports: | https://github.com/richelbilderbeek/pureseqtmr/ |
License: | GPL-3 |
URL: | https://github.com/richelbilderbeek/pureseqtmr/ |
NeedsCompilation: | yes |
SystemRequirements: | PureseqTM (https://github.com/PureseqTM/pureseqTM_package) |
CRAN checks: | pureseqtmr results |
Reference manual: | pureseqtmr.pdf |
Vignettes: |
Demo |
Package source: | pureseqtmr_1.4.tar.gz |
Windows binaries: | r-devel: pureseqtmr_1.4.zip, r-release: pureseqtmr_1.4.zip, r-oldrel: pureseqtmr_1.4.zip |
macOS binaries: | r-release (arm64): pureseqtmr_1.4.tgz, r-oldrel (arm64): pureseqtmr_1.4.tgz, r-release (x86_64): pureseqtmr_1.4.tgz, r-oldrel (x86_64): pureseqtmr_1.4.tgz |
Old sources: | pureseqtmr archive |
Please use the canonical form https://CRAN.R-project.org/package=pureseqtmr to link to this page.
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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