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pureseqtmr: Predict Transmembrane Protein Topology
Proteins reside in either the cell plasma or in the
cell membrane. A membrane protein goes through the
membrane at least once. Given the amino acid sequence of a
membrane protein, the tool
'PureseqTM' (<https://github.com/PureseqTM/pureseqTM_package>,
as described in "Efficient And Accurate Prediction Of Transmembrane
Topology From Amino acid sequence only.", Wang, Qing, et al (2019),
<doi:10.1101/627307>),
can predict the topology of a membrane protein. This package
allows one to use 'PureseqTM' from R.
| Version: |
1.4 |
| Depends: |
R (≥ 3.5.0) |
| Imports: |
data.table, devtools, dplyr, ggplot2, Peptides, plyr, rappdirs, readr, stringr, tibble, Rcpp |
| LinkingTo: |
Rcpp |
| Suggests: |
testthat, knitr, markdown, rmarkdown, profvis |
| Published: |
2023-04-06 |
| DOI: |
10.32614/CRAN.package.pureseqtmr |
| Author: |
Richèl J.C. Bilderbeek
 [aut, cre] |
| Maintainer: |
Richèl J.C. Bilderbeek <richel at richelbilderbeek.nl> |
| BugReports: |
https://github.com/richelbilderbeek/pureseqtmr/ |
| License: |
GPL-3 |
| URL: |
https://github.com/richelbilderbeek/pureseqtmr/ |
| NeedsCompilation: |
yes |
| SystemRequirements: |
PureseqTM
(https://github.com/PureseqTM/pureseqTM_package) |
| CRAN checks: |
pureseqtmr results |
Documentation:
Downloads:
Linking:
Please use the canonical form
https://CRAN.R-project.org/package=pureseqtmr
to link to this page.
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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