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Provides functions and graphics for projecting daily incidence based on past incidence, and estimates of the serial interval and reproduction number. Projections are based on a branching process using a Poisson-distributed number of new cases per day, similar to the model used for estimating R in 'EpiEstim' or in 'earlyR', and described by Nouvellet et al. (2017) <doi:10.1016/j.epidem.2017.02.012>. The package provides the S3 class 'projections' which extends 'matrix', with accessors and additional helpers for handling, subsetting, merging, or adding these objects, as well as dedicated printing and plotting methods.
| Version: | 0.6.1 |
| Depends: | R (≥ 3.5.0) |
| Imports: | stats, utils, incidence (≥ 1.4.1), ggplot2, methods |
| Suggests: | testthat, roxygen2, knitr, rmarkdown, outbreaks, magrittr, distcrete, svglite, EpiEstim |
| Published: | 2024-12-06 |
| DOI: | 10.32614/CRAN.package.projections |
| Author: | Thibaut Jombart [aut, cre], Pierre Nouvellet [aut], Sangeeta Bhatia [ctb], Zhian N. Kamvar [ctb], Tim Taylor [ctb], Stephane Ghozzi [ctb] |
| Maintainer: | Thibaut Jombart <thibautjombart at gmail.com> |
| BugReports: | https://github.com/reconhub/projections/issues |
| License: | MIT + file LICENSE |
| URL: | https://www.repidemicsconsortium.org/projections/ |
| NeedsCompilation: | no |
| Materials: | NEWS |
| CRAN checks: | projections results |
| Reference manual: | projections.pdf |
| Package source: | projections_0.6.1.tar.gz |
| Windows binaries: | r-devel: projections_0.6.1.zip, r-release: projections_0.6.1.zip, r-oldrel: projections_0.6.1.zip |
| macOS binaries: | r-release (arm64): projections_0.6.1.tgz, r-oldrel (arm64): projections_0.6.1.tgz, r-release (x86_64): projections_0.6.1.tgz, r-oldrel (x86_64): projections_0.6.1.tgz |
| Old sources: | projections archive |
| Reverse suggests: | earlyR |
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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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