ViroReportR: Respiratory Viral Infection Forecast Reporting

Tools for reporting and forecasting viral respiratory infections, using case surveillance data. Report generation tools for short-term forecasts, and validation metrics for an arbitrary number of customizable respiratory viruses. Estimation of the effective reproduction number is based on the 'EpiEstim' framework described in work by 'Cori' and colleagues. (2013) <doi:10.1093/aje/kwt133>.

Version:	1.0.3
Depends:	R (≥ 4.1.0)
Imports:	data.table, dplyr, EpiEstim, ggplot2, incidence, lubridate, projections, purrr, rlang, tibble, stats, utils, tidyr, glue, mgcv, kableExtra, cowplot
Suggests:	knitr, rmarkdown, testthat (≥ 3.0.0)
Published:	2026-02-12
DOI:	10.32614/CRAN.package.ViroReportR (may not be active yet)
Author:	Mike Irvine [aut, cre, cph], Caesar Wong [aut], Nirupama Tamvada [aut], Rebeca Falcao [aut], Nelson Tang [aut]
Maintainer:	Mike Irvine <mike.irvine at bccdc.ca>
BugReports:	https://github.com/BCCDC-PHSA/ViroReportR/issues
License:	GPL (≥ 3)
URL:	https://github.com/BCCDC-PHSA/ViroReportR
NeedsCompilation:	no
Materials:	README, NEWS
CRAN checks:	ViroReportR results

Documentation:

Reference manual:	ViroReportR.html , ViroReportR.pdf
Vignettes:	Model fitting and producing short-term forecasts using daily data with EpiEstim (source, R code)

Downloads:

Package source:	ViroReportR_1.0.3.tar.gz
Windows binaries:	r-devel: not available, r-release: ViroReportR_1.0.3.zip, r-oldrel: ViroReportR_1.0.3.zip
macOS binaries:	r-release (arm64): ViroReportR_1.0.3.tgz, r-oldrel (arm64): ViroReportR_1.0.3.tgz, r-release (x86_64): ViroReportR_1.0.3.tgz, r-oldrel (x86_64): ViroReportR_1.0.3.tgz

Linking:

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