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prider: Multiplexed Primer Design by Linear Set Coverage Approximation

Implementation of an oligonucleotide primer and probe design algorithm using a linearly scaling approximation of set coverage. A detailed description available at Smolander and Tamminen, 2021; <doi:10.1101/2021.09.06.459073>.

Version: 1.0.6
Imports: Rcpp (≥ 1.0.5), dplyr, tidyr, purrr, stringr, magrittr, tibble, gplots
LinkingTo: Rcpp
Published: 2026-04-28
DOI: 10.32614/CRAN.package.prider
Author: Manu Tamminen ORCID iD [aut, cre], Niina Smolander ORCID iD [aut]
Maintainer: Manu Tamminen <mavatam at utu.fi>
License: BSD_3_clause + file LICENSE
URL: https://github.com/tamminenlab/prider
NeedsCompilation: yes
Materials: README
CRAN checks: prider results

Documentation:

Reference manual: prider.html , prider.pdf

Downloads:

Package source: prider_1.0.6.tar.gz
Windows binaries: r-devel: prider_1.0.6.zip, r-release: prider_1.0.6.zip, r-oldrel: prider_1.0.6.zip
macOS binaries: r-release (arm64): prider_1.0.6.tgz, r-oldrel (arm64): prider_1.0.6.tgz, r-release (x86_64): not available, r-oldrel (x86_64): not available
Old sources: prider archive

Linking:

Please use the canonical form https://CRAN.R-project.org/package=prider to link to this page.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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