The hardware and bandwidth for this mirror is donated by dogado GmbH, the Webhosting and Full Service-Cloud Provider. Check out our Wordpress Tutorial.
If you wish to report a bug, or if you are interested in having us mirror your free-software or open-source project, please feel free to contact us at mirror[@]dogado.de.
Prider permits multiplexed oligonucleotide primer and probe design for complex DNA sequence sets by implementing an algorithm for linearly scaling approximation of set coverage. A detailed description available at Smolander et al 2022.
# install.packages("devtools")
devtools::install_github("manutamminen/prider")test_fasta <- system.file("extdata", "test.fasta", package = "prider")
# Runs Prider with default values
primer_designs <- prider(test_fasta)
# Returns all the primers
primers(primer_designs)
# Returns the primers of a specific primer group
primers(primer_designs)[1]
# Returns all the sequences
sequences(primer_designs)
# Returns the sequence of a specific Id
sequences(primer_designs)[1]
# Plots the primers groups and the target sequences as a heatmap
plot(primer_designs)These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
Health stats visible at Monitor.