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nucim: Nucleome Imaging Toolbox

Tools for 4D nucleome imaging. Quantitative analysis of the 3D nuclear landscape recorded with super-resolved fluorescence microscopy. See Volker J. Schmid, Marion Cremer, Thomas Cremer (2017) <doi:10.1016/j.ymeth.2017.03.013>.

Version: 1.0.11
Depends: R (≥ 3.0.0), EBImage, bioimagetools (≥ 1.1.4)
Imports: fields, parallel, stringr
Suggests: knitr, rmarkdown, R.rsp
Published: 2021-06-10
DOI: 10.32614/CRAN.package.nucim
Author: Volker Schmid [aut, cre]
Maintainer: Volker Schmid <volker.schmid at lmu.de>
BugReports: https://github.com/bioimaginggroup/nucim/issues
License: GPL-3
URL: https://bioimaginggroup.github.io/nucim/
NeedsCompilation: no
SystemRequirements: tiff fftw libcurl openssl
Citation: nucim citation info
Materials: README NEWS
CRAN checks: nucim results

Documentation:

Reference manual: nucim.pdf
Vignettes: Chromatin compaction classification using DAPI intensity
Workflow for nucleome analysis of many 3D SIM images
Workflow for 3D SIM nucleome analysis

Downloads:

Package source: nucim_1.0.11.tar.gz
Windows binaries: r-devel: nucim_1.0.11.zip, r-release: nucim_1.0.11.zip, r-oldrel: nucim_1.0.11.zip
macOS binaries: r-release (arm64): nucim_1.0.11.tgz, r-oldrel (arm64): nucim_1.0.11.tgz, r-release (x86_64): nucim_1.0.11.tgz, r-oldrel (x86_64): nucim_1.0.11.tgz
Old sources: nucim archive

Linking:

Please use the canonical form https://CRAN.R-project.org/package=nucim to link to this page.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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