The hardware and bandwidth for this mirror is donated by dogado GmbH, the Webhosting and Full Service-Cloud Provider. Check out our Wordpress Tutorial.
If you wish to report a bug, or if you are interested in having us mirror your free-software or open-source project, please feel free to contact us at mirror[@]dogado.de.
nucim (Nucleome Imaging Toolbox) is an R package for quantitative analyses of the 3D nuclear landscape recorded with super-resolved fluorescence microscopy.
The stable version is available on CRAN:
setRepositories(ind=c(1,2))
install.packages(c("nucim"))Installation will take about 5 to 10 seconds. Tested platforms can be found here.
The development version is available on github. The development version probably depends on the development version of bioimagetools:
setRepositories(ind=c(1,2))
install.packages(c("devtools","tiff","EBImage"))
devtools::install_github("bioimaginggroup/bioimagetools")
devtools::install_github("bioimaginggroup/nucim")You may need to install additional libraries on your OS before you can install nucim. E.g. on Ubuntu/Debian systems, please execute:
sudo apt install libssl-dev libcurl4-openssl-dev libtiff5-dev libfftw3-devin the terminal before installing nucim.
Description of the package and basic instructions can be found in:
This package is developed at the BioImaging group at the Department of Statistics, in cooperation with the Biocenter, Department of Biology II, both at LMU Munich.
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
Health stats visible at Monitor.