nQuack: Predicting Ploidal Level from Sequence Data
Predicts ploidal level from sequence data using site-based heterozygosity and a mixture models approach. See Gaynor et al. (2024) <doi:10.1002/aps3.11606>.
| Version: | 1.0.4 |
| Depends: | R (≥ 4.1.0) |
| Imports: | Rcpp (≥ 1.0.11), RcppArmadillo (≥ 14.0.2-1), truncdist, data.table, foreach, future, parallel, doParallel, extraDistr, RcppProgress, httr2, magrittr |
| LinkingTo: | Rcpp, RcppArmadillo, extraDistr, RcppProgress |
| Suggests: | knitr, dplyr, kableExtra, rmarkdown |
| Published: | 2026-07-16 |
| DOI: | 10.32614/CRAN.package.nQuack |
| Author: | Michelle L. Gaynor
 [aut, cre,
cph] |
| Maintainer: | Michelle L. Gaynor <shellyleegaynor at gmail.com> |
| BugReports: | https://github.com/mgaynor1/nQuack/issues |
| License: | GPL-2 | GPL-3 [expanded from: GPL (≥ 2)] |
| Copyright: | see file COPYRIGHTS |
| URL: | http://mlgaynor.com/nQuack/, https://github.com/mgaynor1/nQuack/ |
| NeedsCompilation: | yes |
| SystemRequirements: | C++17 samtools (>= 1.10) |
| Citation: | nQuack citation info |
| Materials: | README, NEWS |
| CRAN checks: | nQuack results |
Documentation:
| Reference manual: | nQuack.html , nQuack.pdf |
| Vignettes: |
Basic Example (source, R code) Data Preparation (source, R code) FAQ (source, R code) Faster Example (source, R code) Model Options (source, R code) Outliers (source, R code) Qploidy2 to nQuack (source, R code) Simulate Data (source, R code) VCF to nQuack (source, R code) |
Downloads:
| Package source: | nQuack_1.0.4.tar.gz |
| Windows binaries: | r-devel: nQuack_1.0.4.zip, r-release: nQuack_1.0.4.zip, r-oldrel: nQuack_1.0.4.zip |
| macOS binaries: | r-release (arm64): nQuack_1.0.4.tgz, r-oldrel (arm64): nQuack_1.0.4.tgz, r-release (x86_64): nQuack_1.0.4.tgz, r-oldrel (x86_64): nQuack_1.0.4.tgz |
Linking:
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