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mr.mashr: Multiple Regression with Multivariate Adaptive Shrinkage

Provides an implementation of methods for multivariate multiple regression with adaptive shrinkage priors as described in F. Morgante et al (2023) <doi:10.1371/journal.pgen.1010539>.

Version: 0.3.44
Depends: R (≥ 3.1.0)
Imports: methods, stats, Matrix, Rcpp (≥ 1.1.0), RcppParallel (≥ 5.1.10), mvtnorm, matrixStats, mashr (≥ 0.2.73), ebnm, flashier (≥ 1.0.7), parallel
LinkingTo: Rcpp, RcppArmadillo (≥ 0.10.4.0.0), RcppParallel
Suggests: testthat, varbvs, knitr, rmarkdown
Published: 2026-01-07
DOI: 10.32614/CRAN.package.mr.mashr
Author: Fabio Morgante [aut], Jason Willwerscheid [ctb], Gao Wang [ctb], Deborah Kunkel [aut], Daniel Nachun [ctb], Peter Carbonetto [cre, aut], Matthew Stephens [aut]
Maintainer: Peter Carbonetto <peter.carbonetto at gmail.com>
License: MIT + file LICENSE
URL: https://github.com/stephenslab/mr.mashr
NeedsCompilation: yes
SystemRequirements: GNU make
Materials: README
CRAN checks: mr.mashr results

Documentation:

Reference manual: mr.mashr.html , mr.mashr.pdf
Vignettes: Introduction to mr.mash (source, R code)

Downloads:

Package source: mr.mashr_0.3.44.tar.gz
Windows binaries: r-devel: mr.mashr_0.3.44.zip, r-release: mr.mashr_0.3.44.zip, r-oldrel: mr.mashr_0.3.44.zip
macOS binaries: r-release (arm64): mr.mashr_0.3.44.tgz, r-oldrel (arm64): mr.mashr_0.3.44.tgz, r-release (x86_64): mr.mashr_0.3.44.tgz, r-oldrel (x86_64): mr.mashr_0.3.44.tgz

Linking:

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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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