mppR: Multi-Parent Population QTL Analysis

Analysis of experimental multi-parent populations to detect regions of the genome (called quantitative trait loci, QTLs) influencing phenotypic traits measured in unique and multiple environments. The population must be composed of crosses between a set of at least three parents (e.g. factorial design, 'diallel', or nested association mapping). The functions cover data processing, QTL detection, and results visualization. The implemented methodology is described in Garin, Wimmer, Mezmouk, Malosetti and van Eeuwijk (2017) <doi:10.1007/s00122-017-2923-3>, in Garin, Malosetti and van Eeuwijk (2020) <doi:10.1007/s00122-020-03621-0>, and in Garin, Diallo, Tekete, Thera, ..., and Rami (2024) <doi:10.1093/genetics/iyae003>.

Version:	1.5.0
Depends:	R (≥ 3.1.0)
Imports:	dplyr, ggplot2, graphics, grDevices, igraph, Matrix, methods, nlme, parallel, qtl, stats, utils
Suggests:	knitr, rmarkdown, testthat
Published:	2024-02-22
DOI:	10.32614/CRAN.package.mppR
Author:	Vincent Garin [aut, cre], Valentin Wimmer [aut], Dietrich Borchardt [ctb, dtc], Fred van Eeuwijk [ctb, ths], Marcos Malosetti [ctb, ths]
Maintainer:	Vincent Garin <vincent.garin6 at gmail.com>
BugReports:	https://github.com/vincentgarin/mppR/issues
License:	GPL-3
URL:	https://github.com/vincentgarin/mppR
NeedsCompilation:	no
Citation:	mppR citation info
Materials:	README NEWS
CRAN checks:	mppR results

Documentation:

Reference manual:	mppR.pdf
Vignettes:	QTL detection in multiparental populations characterized in multiple environments mppR: An R Package for QTL Analysis in Multi-parent Populations

Downloads:

Package source:	mppR_1.5.0.tar.gz
Windows binaries:	r-devel: mppR_1.5.0.zip, r-release: mppR_1.5.0.zip, r-oldrel: mppR_1.5.0.zip
macOS binaries:	r-release (arm64): mppR_1.5.0.tgz, r-oldrel (arm64): mppR_1.5.0.tgz, r-release (x86_64): mppR_1.5.0.tgz, r-oldrel (x86_64): mppR_1.5.0.tgz
Old sources:	mppR archive

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