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mppR 1.5.0

• Modification replacement of the functions QTL_effect_main_QxE by QTL_effect_main_QEI and QTL_effect_QxEC by QTL_effect_main_QxEC to update the procedure to estimate the significance of the QTL by environment interaction of the parental allelic effects and the estimation of the sensitivity slope
• Correction of a bug to calculate the significance of the QTLxE effect using the Wald test

mppR 1.4.0

• Addition of function to perform multi-parent multi-environment QTL detection (mppGE_SIM, mppGE_CIM, mppGE_proc, etc.)
• Addition of a new vignette to illustrate the multi-parent multi-environment QTL detection
• Extra function (mppData_add_pheno, mppData_mdf_pheno) to manipulate mppData objects especially modify the phenotypic data

mppR 1.3.0

• Correction of few problems to load BCsFt populations (IBD.mppData).
• Addition of new options in MQE_proc: possibility to select a reference parent effect calculation, possibility to calculate a confidence interval for the QTL positions
• Addition of new functions (QTL_forward, mpp_forward) to realize a MPP QTL detection using a forward regression strategy

mppR 1.2.1

• Correction due to the fact that package synbreed was removed from CRAN
• The possibility to do marker imputation was suppressed.
• Small modification in the genetic effect plot. Inversion of color

mppR 1.2.0

• Corrections of bugs affecting the presentation of the QTL additive effects in: QTL_gen_effects(), MQE_gen_effects(), and the QTL reports of mpp_proc() and MQE_proc()
• Review of the vignette, small modifications in the documentation and in the error messages
• Stop to update the branch ‘mppR_clusthaplo’. Stay two branches: ‘master’ containing the largest version of the package with mixed models and direct call to clusthaplo, and ‘mppR_CRAN’ a reduced version without the mixed models and the call to clusthaplo.

mppR 1.1.11

• Put dependency to the ‘synbreed’ package as suggested and not depends

mppR 1.1.10

• version of the package contained on branch ‘mppR_CRAN’ published on CRAN

mppR 1.1.8

• submission to CRAN
• Revision: suppress the dependency to clusthaplo. Form two branches on Github: ‘mppR_clusthaplo’ (contain function to call clusthaplo) and ‘mppR_CRAN’

mppR 1.1.7

• publish mppR on Github

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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