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Provides fast and accurate inference for the parameter estimation problem in Ordinary Differential Equations, including the case when there are unobserved system components. Implements the MAGI method (MAnifold-constrained Gaussian process Inference) of Yang, Wong, and Kou (2021) <doi:10.1073/pnas.2020397118>. A user guide is provided by the accompanying software paper Wong, Yang, and Kou (2024) <doi:10.18637/jss.v109.i04>.
Version: | 1.2.4 |
Depends: | R (≥ 3.6.0) |
Imports: | Rcpp (≥ 1.0.6), gridExtra, gridBase, grid, methods, deSolve |
LinkingTo: | Rcpp, RcppArmadillo, BH, roptim |
Suggests: | testthat, mvtnorm, covr, knitr, MASS, rmarkdown, markdown |
Published: | 2024-06-22 |
DOI: | 10.32614/CRAN.package.magi |
Author: | Shihao Yang [aut, cre], Samuel W.K. Wong [aut], S.C. Kou [ctb, cph] (Contributor of MAGI method development) |
Maintainer: | Shihao Yang <shihao.yang at isye.gatech.edu> |
License: | MIT + file LICENSE |
URL: | https://doi.org/10.18637/jss.v109.i04 |
NeedsCompilation: | yes |
Citation: | magi citation info |
Materials: | README |
In views: | DifferentialEquations |
CRAN checks: | magi results |
Reference manual: | magi.pdf |
Vignettes: |
magi-vignette |
Package source: | magi_1.2.4.tar.gz |
Windows binaries: | r-devel: magi_1.2.4.zip, r-release: magi_1.2.4.zip, r-oldrel: magi_1.2.4.zip |
macOS binaries: | r-release (arm64): magi_1.2.4.tgz, r-oldrel (arm64): magi_1.2.4.tgz, r-release (x86_64): magi_1.2.4.tgz, r-oldrel (x86_64): magi_1.2.4.tgz |
Old sources: | magi archive |
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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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