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A stochastic, spatially-explicit, demo-genetic model simulating the spread and evolution of a plant pathogen in a heterogeneous landscape to assess resistance deployment strategies. It is based on a spatial geometry for describing the landscape and allocation of different cultivars, a dispersal kernel for the dissemination of the pathogen, and a SEIR ('Susceptible-Exposed-Infectious-Removed’) structure with a discrete time step. It provides a useful tool to assess the performance of a wide range of deployment options with respect to their epidemiological, evolutionary and economic outcomes. Loup Rimbaud, Julien Papaïx, Jean-François Rey, Luke G Barrett, Peter H Thrall (2018) <doi:10.1371/journal.pcbi.1006067>.
Version: | 1.4.0 |
Depends: | R (≥ 4.2.0), sp (≥ 1.0-17) |
Imports: | methods, utils, stats (≥ 3.0.2), grDevices (≥ 3.0.0), graphics (≥ 3.0.0), parallel, Rcpp (≥ 0.9.0), Matrix (≥ 1.3-0), mvtnorm, fields, splancs, sf, DBI, RSQLite, foreach, doParallel, deSolve |
LinkingTo: | Rcpp, testthat |
Suggests: | testthat (≥ 3.0.0), shiny, shinyjs, DT, knitr, rmarkdown |
Published: | 2024-03-12 |
DOI: | 10.32614/CRAN.package.landsepi |
Author: | Loup Rimbaud |
Maintainer: | Jean-François Rey <jean-francois.rey at inrae.fr> |
BugReports: | https://gitlab.paca.inrae.fr/CSIRO-INRA/landsepi/-/issues |
License: | GPL-2 | GPL-3 | file LICENSE [expanded from: GPL (≥ 2) | file LICENSE] |
URL: | https://csiro-inra.pages.biosp.inrae.fr/landsepi/, https://gitlab.paca.inrae.fr/CSIRO-INRA/landsepi |
NeedsCompilation: | yes |
SystemRequirements: | C++, gsl |
Citation: | landsepi citation info |
Materials: | NEWS |
In views: | Agriculture |
CRAN checks: | landsepi results |
Package source: | landsepi_1.4.0.tar.gz |
Windows binaries: | r-devel: landsepi_1.4.0.zip, r-release: landsepi_1.4.0.zip, r-oldrel: landsepi_1.4.0.zip |
macOS binaries: | r-release (arm64): landsepi_1.4.0.tgz, r-oldrel (arm64): landsepi_1.4.0.tgz, r-release (x86_64): landsepi_1.4.0.tgz, r-oldrel (x86_64): landsepi_1.4.0.tgz |
Old sources: | landsepi archive |
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