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iTOP: Inferring the Topology of Omics Data

Infers a topology of relationships between different datasets, such as multi-omics and phenotypic data recorded on the same samples. We based this methodology on the RV coefficient (Robert & Escoufier, 1976, <doi:10.2307/2347233>), a measure of matrix correlation, which we have extended for partial matrix correlations and binary data (Aben et al., 2018, <doi:10.1101/293993>).

Version: 1.0.2
Imports: Matrix, corpcor
Suggests: knitr, rmarkdown, NMF, pcalg, Rgraphviz
Published: 2018-06-13
DOI: 10.32614/CRAN.package.iTOP
Author: Nanne Aben
Maintainer: Nanne Aben <nanne.aben at gmail.com>
License: GPL-2
NeedsCompilation: no
Materials: NEWS
CRAN checks: iTOP results

Documentation:

Reference manual: iTOP.pdf
Vignettes: A quick introduction to iTOP

Downloads:

Package source: iTOP_1.0.2.tar.gz
Windows binaries: r-devel: iTOP_1.0.2.zip, r-release: iTOP_1.0.2.zip, r-oldrel: iTOP_1.0.2.zip
macOS binaries: r-release (arm64): iTOP_1.0.2.tgz, r-oldrel (arm64): iTOP_1.0.2.tgz, r-release (x86_64): iTOP_1.0.2.tgz, r-oldrel (x86_64): iTOP_1.0.2.tgz
Old sources: iTOP archive

Linking:

Please use the canonical form https://CRAN.R-project.org/package=iTOP to link to this page.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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