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Infers a topology of relationships between different datasets, such as multi-omics and phenotypic data recorded on the same samples. We based this methodology on the RV coefficient (Robert & Escoufier, 1976, <doi:10.2307/2347233>), a measure of matrix correlation, which we have extended for partial matrix correlations and binary data (Aben et al., 2018, <doi:10.1101/293993>).
| Version: | 1.0.2 |
| Imports: | Matrix, corpcor |
| Suggests: | knitr, rmarkdown, NMF, pcalg, Rgraphviz |
| Published: | 2018-06-13 |
| DOI: | 10.32614/CRAN.package.iTOP |
| Author: | Nanne Aben |
| Maintainer: | Nanne Aben <nanne.aben at gmail.com> |
| License: | GPL-2 |
| NeedsCompilation: | no |
| Materials: | NEWS |
| CRAN checks: | iTOP results |
| Reference manual: | iTOP.pdf |
| Vignettes: |
A quick introduction to iTOP |
| Package source: | iTOP_1.0.2.tar.gz |
| Windows binaries: | r-devel: iTOP_1.0.2.zip, r-release: iTOP_1.0.2.zip, r-oldrel: iTOP_1.0.2.zip |
| macOS binaries: | r-release (arm64): iTOP_1.0.2.tgz, r-oldrel (arm64): iTOP_1.0.2.tgz, r-release (x86_64): iTOP_1.0.2.tgz, r-oldrel (x86_64): iTOP_1.0.2.tgz |
| Old sources: | iTOP archive |
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