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hwep: Hardy-Weinberg Equilibrium in Polyploids
Inference concerning equilibrium and random mating in
autopolyploids. Methods are available to test for equilibrium
and random mating at any even ploidy level (>2) in the presence
of double reduction at biallelic loci. For autopolyploid populations
in equilibrium, methods are available to estimate the degree of
double reduction. We also provide functions to calculate genotype
frequencies at equilibrium, or after one or several rounds of
random mating, given rates of double reduction. The main function is
hwefit(). This material is based upon work supported by the
National Science Foundation under Grant No. 2132247. The opinions,
findings, and conclusions or recommendations expressed are those of
the author and do not necessarily reflect the views of the National
Science Foundation. For details of these methods, see
Gerard (2022a) <doi:10.1111/biom.13722> and
Gerard (2022b) <doi:10.1101/2022.08.11.503635>.
| Version: |
2.0.2 |
| Depends: |
R (≥ 3.4.0) |
| Imports: |
bridgesampling, doFuture, doRNG, foreach, future, iterators, methods, pracma, Rcpp (≥ 0.12.0), RcppParallel (≥ 5.0.1), rstan (≥ 2.18.1), rstantools (≥ 2.2.0), tensr, updog |
| LinkingTo: |
BH (≥ 1.66.0), Rcpp (≥ 0.12.0), RcppEigen (≥ 0.3.3.3.0), RcppParallel (≥ 5.0.1), rstan (≥ 2.18.1), StanHeaders (≥
2.18.0) |
| Suggests: |
testthat (≥ 3.0.0), covr, knitr, rmarkdown, ggplot2 |
| Published: |
2023-05-16 |
| DOI: |
10.32614/CRAN.package.hwep |
| Author: |
David Gerard 
[aut, cre],
NSF DBI 2132247 [fnd]
(https://www.nsf.gov/awardsearch/showAward?AWD_ID=2132247) |
| Maintainer: |
David Gerard <gerard.1787 at gmail.com> |
| BugReports: |
https://github.com/dcgerard/hwep/issues |
| License: |
GPL (≥ 3) |
| URL: |
https://dcgerard.github.io/hwep/ |
| NeedsCompilation: |
yes |
| SystemRequirements: |
GNU make |
| Citation: |
hwep citation info |
| Materials: |
README NEWS |
| CRAN checks: |
hwep results |
Documentation:
Downloads:
Linking:
Please use the canonical form
https://CRAN.R-project.org/package=hwep
to link to this page.
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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