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htrSPRanalysis: Analysis of Surface Plasmon Resonance Data

Analysis of Surface Plasmon Resonance (SPR) and Biolayer Interferometry data, with automations for high-throughput SPR. This version of the package fits the 1: 1 binding model, with and without bulkshift. It offers optional local or global Rmax fitting. The user must provide a sample sheet and a Carterra output file in Carterra's current format. There is a utility function to convert from Carterra's old output format. The user may run a custom pipeline or use the provided 'Runscript', which will produce a pdf file containing fitted Rmax, ka, kd and standard errors, a plot of the sensorgram and fits, and a plot of residuals. The script will also produce a .csv file with all of the relevant parameters for each spot on the SPR chip.

Version: 0.1.0
Imports: magrittr, readxl, openxlsx, minpack.lm, zoo, stats, gridExtra, grid, parallel, readr, rlang, dplyr, stringr, tidyselect, ggplot2, purrr, forcats, tibble, tidyr
Suggests: knitr, rmarkdown, markdown, qpdf
Published: 2024-08-26
DOI: 10.32614/CRAN.package.htrSPRanalysis
Author: Janice McCarthy Developer [aut, cre, cph], Kan Li Dev [aut], S. Moses Dennison [aut], Georgia D. Tomaras [aut]
Maintainer: Janice McCarthy Developer <janice.mccarthy at duke.edu>
License: GPL (≥ 3)
NeedsCompilation: no
Materials: README
CRAN checks: htrSPRanalysis results

Documentation:

Reference manual: htrSPRanalysis.pdf
Vignettes: Introduction to htSPRanalysis (source, R code)

Downloads:

Package source: htrSPRanalysis_0.1.0.tar.gz
Windows binaries: r-devel: htrSPRanalysis_0.1.0.zip, r-release: htrSPRanalysis_0.1.0.zip, r-oldrel: htrSPRanalysis_0.1.0.zip
macOS binaries: r-release (arm64): htrSPRanalysis_0.1.0.tgz, r-oldrel (arm64): htrSPRanalysis_0.1.0.tgz, r-release (x86_64): htrSPRanalysis_0.1.0.tgz, r-oldrel (x86_64): htrSPRanalysis_0.1.0.tgz

Linking:

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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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