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A set of utilities for querying 'HaploReg' <https://pubs.broadinstitute.org/mammals/haploreg/haploreg.php>, 'RegulomeDB' <https://www.regulomedb.org/regulome-search/> web-based tools. The package connects to 'HaploReg', 'RegulomeDB' searches and downloads results, without opening web pages, directly from R environment. Results are stored in a data frame that can be directly used in various kinds of downstream analyses.
| Version: | 4.0.7 |
| Depends: | R (≥ 3.4.0) |
| Imports: | httr, XML, tibble, RUnit, plyr, DT, RCurl, RJSONIO, methods |
| Suggests: | knitr, rmarkdown, openxlsx |
| Published: | 2023-10-09 |
| DOI: | 10.32614/CRAN.package.haploR |
| Author: | Ilya Y. Zhbannikov [aut, cre], Konstantin G. Arbeev [aut], Anatoliy I. Yashin [aut] |
| Maintainer: | Ilya Y. Zhbannikov <ilya.zhbannikov at duke.edu> |
| License: | GPL-3 |
| NeedsCompilation: | no |
| Materials: | README NEWS |
| CRAN checks: | haploR results |
| Reference manual: | haploR.pdf |
| Vignettes: |
Tutorial for haploR package |
| Package source: | haploR_4.0.7.tar.gz |
| Windows binaries: | r-devel: haploR_4.0.7.zip, r-release: haploR_4.0.7.zip, r-oldrel: haploR_4.0.7.zip |
| macOS binaries: | r-release (arm64): haploR_4.0.7.tgz, r-oldrel (arm64): haploR_4.0.7.tgz, r-release (x86_64): haploR_4.0.7.tgz, r-oldrel (x86_64): haploR_4.0.7.tgz |
| Old sources: | haploR archive |
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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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