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Provides tools for plotting gene clusters and transcripts by importing data from GenBank, FASTA, and GFF files. It performs global pairwise protein alignments and 'MUMmer' alignments [Needleman and Wunsch (1970) <doi:10.1016/0022-2836(70)90057-4>; Delcher et al. (1999) <doi:10.1093/nar/27.11.2369>] and displays results on gene arrow maps. Extensive customization options are available, including legends, labels, annotations, scales, colors, tooltips, and more.
| Version: | 0.2.0 |
| Depends: | R (≥ 3.5.0) |
| Imports: | htmlwidgets, fontawesome, magrittr, dplyr (≥ 1.0.0), rlang, grDevices, stats, tools, utils |
| Suggests: | shiny, pwalign, Biostrings, chromote, htmltools, jsonlite, testthat (≥ 3.2.0) |
| Published: | 2026-11-03 |
| DOI: | 10.32614/CRAN.package.geneviewer |
| Author: | Niels van der Velden [aut, cre], Mike Bostock [ctb, cph] (Bundled D3 library), Eli Grey [ctb, cph] (Bundled FileSaver.js library) |
| Maintainer: | Niels van der Velden <n.s.j.vandervelden at gmail.com> |
| BugReports: | https://github.com/nvelden/geneviewer/issues |
| License: | MIT + file LICENSE |
| Copyright: | see file COPYRIGHTS |
| URL: | https://github.com/nvelden/geneviewer |
| NeedsCompilation: | no |
| SystemRequirements: | MUMmer (optional, used by mummer_alignment()) |
| Language: | en-US |
| Materials: | README, NEWS |
| CRAN checks: | geneviewer results |
| Reference manual: | geneviewer.html , geneviewer.pdf |
| Package source: | geneviewer_0.2.0.tar.gz |
| Windows binaries: | r-devel: geneviewer_0.1.11.zip, r-release: geneviewer_0.2.0.zip, r-oldrel: geneviewer_0.2.0.zip |
| macOS binaries: | r-release (arm64): geneviewer_0.2.0.tgz, r-oldrel (arm64): geneviewer_0.2.0.tgz, r-release (x86_64): geneviewer_0.2.0.tgz, r-oldrel (x86_64): geneviewer_0.2.0.tgz |
| Old sources: | geneviewer archive |
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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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