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geneHummus: A Pipeline to Define Gene Families in Legumes and Beyond
A pipeline with high specificity and sensitivity in extracting
proteins from the RefSeq database (National Center for Biotechnology
Information). Manual identification of gene families is highly
time-consuming and laborious, requiring an iterative process of manual and
computational analysis to identify members of a given family. The pipelines
implements an automatic approach for the identification of gene families
based on the conserved domains that specifically define that family. See
Die et al. (2018) <doi:10.1101/436659> for more information and examples.
| Version: |
1.0.11 |
| Depends: |
R (≥ 3.4.0) |
| Imports: |
rentrez (≥ 1.2.1), stringr (≥ 1.4.0), dplyr (≥ 0.8.0.1), httr (≥ 1.4.0), utils, curl (≥ 3.3) |
| Suggests: |
knitr, rmarkdown |
| Published: |
2019-04-04 |
| DOI: |
10.32614/CRAN.package.geneHummus |
| Author: |
Jose V. Die  [aut,
cre],
Moamen M. Elmassry [ctb],
Kimberly H. LeBlanc [ctb],
Olaitan I. Awe [ctb],
Allissa Dillman [ctb],
Ben Busby [aut] |
| Maintainer: |
Jose V. Die <jose.die at uco.es> |
| BugReports: |
https://github.com/NCBI-Hackathons/GeneHummus/issues |
| License: |
MIT + file LICENSE |
| URL: |
https://github.com/NCBI-Hackathons/GeneHummus |
| NeedsCompilation: |
no |
| Materials: |
README |
| CRAN checks: |
geneHummus results |
Documentation:
Downloads:
Linking:
Please use the canonical form
https://CRAN.R-project.org/package=geneHummus
to link to this page.
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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