The hardware and bandwidth for this mirror is donated by dogado GmbH, the Webhosting and Full Service-Cloud Provider. Check out our Wordpress Tutorial.
If you wish to report a bug, or if you are interested in having us mirror your free-software or open-source project, please feel free to contact us at mirror[@]dogado.de.

geneHummus

An Automated Pipeline to Study Plant Gene Families based on Protein Domain Organization using Auxin Response Factors in chickpea and other Legumes as an Example. The pipeline is convenient if you are interested in plant gene families characterization, or you’d like to perform some downstream analysis such as phylogenetic construction or gene expression profiling, to name a few examples.

Accessing the package

A stable version of this package is available on CRAN and can be installed directly from there:

install.packages("geneHummus")

The lastest development version of the package can also be loaded directly from GitHub using the devtools package:

library(devtools)
install_github("NCBI-Hackathons/GeneHummus")
library(GeneHummus)

Publication

Die JV, Elmassry MM, Leblanc KH, Awe OI, Dillman A, Busby B (2018) GeneHummus: A pipeline to define gene families and their expression in legumes and beyond, bioRxiv 436659; doi: https://doi.org/10.1101/436659

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
Health stats visible at Monitor.