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Detection of runs of homozygosity and of heterozygosity in diploid genomes using two methods: sliding windows (Purcell et al (2007) <doi:10.1086/519795>) and consecutive runs (Marras et al (2015) <doi:10.1111/age.12259>).
| Version: | 0.9.6 |
| Depends: | R (≥ 3.0.0) |
| Imports: | plyr, iterators, itertools, ggplot2, reshape2, Rcpp, gridExtra, data.table |
| LinkingTo: | Rcpp |
| Suggests: | testthat, knitr, rmarkdown, prettydoc |
| Published: | 2019-10-24 |
| DOI: | 10.32614/CRAN.package.detectRUNS |
| Author: | Filippo Biscarini [aut, cre], Paolo Cozzi [aut], Giustino Gaspa [aut], Gabriele Marras [aut] |
| Maintainer: | Filippo Biscarini <filippo.biscarini at gmail.com> |
| BugReports: | https://github.com/bioinformatics-ptp/detectRUNS/issues |
| License: | GPL-3 |
| URL: | https://github.com/bioinformatics-ptp/detectRUNS/tree/master/detectRUNS |
| NeedsCompilation: | yes |
| Materials: | README NEWS |
| CRAN checks: | detectRUNS results |
| Reference manual: | detectRUNS.pdf |
| Vignettes: |
detectRUNS: an R package to detect runs of homozygosity and heterozygosity in diploid genomes |
| Package source: | detectRUNS_0.9.6.tar.gz |
| Windows binaries: | r-devel: detectRUNS_0.9.6.zip, r-release: detectRUNS_0.9.6.zip, r-oldrel: detectRUNS_0.9.6.zip |
| macOS binaries: | r-release (arm64): detectRUNS_0.9.6.tgz, r-oldrel (arm64): detectRUNS_0.9.6.tgz, r-release (x86_64): detectRUNS_0.9.6.tgz, r-oldrel (x86_64): detectRUNS_0.9.6.tgz |
| Old sources: | detectRUNS archive |
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