The hardware and bandwidth for this mirror is donated by dogado GmbH, the Webhosting and Full Service-Cloud Provider. Check out our Wordpress Tutorial.
If you wish to report a bug, or if you are interested in having us mirror your free-software or open-source project, please feel free to contact us at mirror[@]dogado.de.
Given the hypothesis of a bi-modal distribution of cells for each marker, the algorithm constructs a binary tree, the nodes of which are subpopulations of cells. At each node, observed cells and markers are modeled by both a family of normal distributions and a family of bi-modal normal mixture distributions. Splitting is done according to a normalized difference of AIC between the two families. Method is detailed in: Commenges, Alkhassim, Gottardo, Hejblum & Thiebaut (2018) <doi:10.1002/cyto.a.23601>.
| Version: | 2.0.2 |
| Depends: | R (≥ 3.1.0), Rcpp (≥ 0.12.11) |
| Imports: | ggplot2, graphics, igraph, mclust, methods, stats, cowplot, GoFKernel |
| LinkingTo: | Rcpp, RcppArmadillo |
| Suggests: | knitr, formatR, rmarkdown, viridis |
| Published: | 2019-12-04 |
| DOI: | 10.32614/CRAN.package.cytometree |
| Author: | Chariff Alkhassim, Boris P Hejblum, Anthony Devaux, Van Hung Huynh Tran |
| Maintainer: | Boris P Hejblum <boris.hejblum at u-bordeaux.fr> |
| BugReports: | https://github.com/sistm/Cytometree/issues |
| License: | LGPL-3 | file LICENSE |
| NeedsCompilation: | yes |
| Citation: | cytometree citation info |
| Materials: | README NEWS |
| CRAN checks: | cytometree results |
| Reference manual: | cytometree.pdf |
| Vignettes: |
User guide for performing automatic gating with 'cytometree' 'cytoftree': extension of 'cytometree' to analyze mass cytometry data |
| Package source: | cytometree_2.0.2.tar.gz |
| Windows binaries: | r-devel: cytometree_2.0.2.zip, r-release: cytometree_2.0.2.zip, r-oldrel: cytometree_2.0.2.zip |
| macOS binaries: | r-release (arm64): cytometree_2.0.2.tgz, r-oldrel (arm64): cytometree_2.0.2.tgz, r-release (x86_64): cytometree_2.0.2.tgz, r-oldrel (x86_64): cytometree_2.0.2.tgz |
| Old sources: | cytometree archive |
| Reverse imports: | cyanoFilter |
Please use the canonical form https://CRAN.R-project.org/package=cytometree to link to this page.
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
Health stats visible at Monitor.